{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,11]],"date-time":"2026-04-11T14:18:07Z","timestamp":1775917087214,"version":"3.50.1"},"reference-count":67,"publisher":"American Society for Microbiology","issue":"1","license":[{"start":{"date-parts":[[2021,1,20]],"date-time":"2021-01-20T00:00:00Z","timestamp":1611100800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2021,2,24]],"date-time":"2021-02-24T00:00:00Z","timestamp":1614124800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000054","name":"HHS | NIH | National Cancer Institute","doi-asserted-by":"publisher","award":["1R35CA220523"],"award-info":[{"award-number":["1R35CA220523"]}],"id":[{"id":"10.13039\/100000054","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"HHS | NIH | National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["AI118898"],"award-info":[{"award-number":["AI118898"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"HHS | NIH | National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["T32AI07422"],"award-info":[{"award-number":["T32AI07422"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1560388"],"award-info":[{"award-number":["1560388"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"HHS | NIH | National Institute of General Medical Sciences","doi-asserted-by":"publisher","award":["T32GM139772"],"award-info":[{"award-number":["T32GM139772"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000050","name":"HHS | NIH | National Heart, Lung, and Blood Institute","doi-asserted-by":"publisher","award":["5R01HL135142"],"award-info":[{"award-number":["5R01HL135142"]}],"id":[{"id":"10.13039\/100000050","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mSphere"],"published-print":{"date-parts":[[2021,2,24]]},"abstract":"<jats:p>\n            <jats:named-content content-type=\"genus-species\">Candida albicans<\/jats:named-content>\n            is the most common fungal member of the human gut microbiota, yet its ability to interact with and affect the bacterial gut microbiota is largely uncharacterized. Previous reports showed limited changes in microbiota composition as defined by bacterial species abundance as a consequence of\n            <jats:named-content content-type=\"genus-species\">C. albicans<\/jats:named-content>\n            colonization.\n          <\/jats:p>","DOI":"10.1128\/msphere.00982-20","type":"journal-article","created":{"date-parts":[[2021,1,19]],"date-time":"2021-01-19T12:31:52Z","timestamp":1611059512000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":6,"title":["Decreased Ecological Resistance of the Gut Microbiota in Response to Clindamycin Challenge in Mice Colonized with the Fungus Candida albicans"],"prefix":"10.1128","volume":"6","author":[{"given":"Laura","family":"Markey","sequence":"first","affiliation":[{"name":"Graduate School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, USA"},{"name":"Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Antonia","family":"Pugliese","sequence":"additional","affiliation":[{"name":"Graduate School of Biomedical Sciences, Tufts University School of Medicine, Boston, Massachusetts, USA"},{"name":"Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Theresa","family":"Tian","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Tufts University School of Engineering, Medford, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Farrah","family":"Roy","sequence":"additional","affiliation":[{"name":"Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kyongbum","family":"Lee","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Tufts University School of Engineering, Medford, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6352-4918","authenticated-orcid":false,"given":"Carol A.","family":"Kumamoto","sequence":"additional","affiliation":[{"name":"Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1000087107"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-016-0189-7"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.2174\/1871530314666140207103335"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-016-0275-2"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature07540"},{"key":"e_1_3_2_7_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00880-10"},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1038\/cmi.2015.09"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0139935"},{"key":"e_1_3_2_10_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0196510"},{"key":"e_1_3_2_11_2","doi-asserted-by":"publisher","DOI":"10.23736\/S1121-421X.17.02330-3"},{"key":"e_1_3_2_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00029-06"},{"key":"e_1_3_2_13_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-06103-6"},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1038\/ajg.2009.225"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1080\/19490976.2018.1465158"},{"key":"e_1_3_2_16_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2019.02.004"},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0112472"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1086\/528990"},{"key":"e_1_3_2_19_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0210798"},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-018-0538-9"},{"key":"e_1_3_2_21_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep02191"},{"key":"e_1_3_2_22_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aad2602"},{"key":"e_1_3_2_23_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41579-018-0024-1"},{"key":"e_1_3_2_24_2","doi-asserted-by":"publisher","DOI":"10.2307\/4003893"},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature09944"},{"key":"e_1_3_2_26_2","doi-asserted-by":"publisher","DOI":"10.1890\/08-1868.1"},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-6-r60"},{"key":"e_1_3_2_28_2","doi-asserted-by":"publisher","DOI":"10.6133\/apjcn.2014.23.3.16"},{"key":"e_1_3_2_29_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-019-1557-9"},{"key":"e_1_3_2_30_2","doi-asserted-by":"publisher","DOI":"10.2478\/s11686-019-00044-w"},{"key":"e_1_3_2_31_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.00073"},{"key":"e_1_3_2_32_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284-018-1471-7"},{"key":"e_1_3_2_33_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41591-019-0709-7"},{"key":"e_1_3_2_34_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-28524-1_6"},{"key":"e_1_3_2_35_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1007717"},{"key":"e_1_3_2_36_2","doi-asserted-by":"publisher","DOI":"10.1038\/mi.2009.17"},{"key":"e_1_3_2_37_2","doi-asserted-by":"publisher","DOI":"10.4049\/jimmunol.179.9.5999"},{"key":"e_1_3_2_38_2","doi-asserted-by":"publisher","DOI":"10.3390\/jof6030100"},{"key":"e_1_3_2_39_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-020-17180-x"},{"key":"e_1_3_2_40_2","first-page":"1695","article-title":"The igraph software package for complex network research","author":"Csardi G","year":"2006","unstructured":"Csardi G, Nepusz T. 2006. The igraph software package for complex network research. InterJournal Complex Systems:1695. http:\/\/igraph.org.","journal-title":"InterJournal"},{"key":"e_1_3_2_41_2","unstructured":"Epskamp S. 2020. qgraph: graph plotting methods psychometric data visualization and graphical model estimation. https:\/\/CRAN.R-project.org\/package=qgraph."},{"key":"e_1_3_2_42_2","doi-asserted-by":"publisher","DOI":"10.1002\/spe.4380211102"},{"key":"e_1_3_2_43_2","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevE.70.066111"},{"key":"e_1_3_2_44_2","doi-asserted-by":"publisher","DOI":"10.1037\/abn0000181"},{"key":"e_1_3_2_45_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.gene.2012.11.028"},{"key":"e_1_3_2_46_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01021-14"},{"key":"e_1_3_2_47_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2017.04.002"},{"key":"e_1_3_2_48_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmicrobiol.2016.215"},{"key":"e_1_3_2_49_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1219451110"},{"key":"e_1_3_2_50_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.194118.115"},{"key":"e_1_3_2_51_2","doi-asserted-by":"publisher","DOI":"10.1038\/nutd.2015.9"},{"key":"e_1_3_2_52_2","doi-asserted-by":"publisher","DOI":"10.1136\/gutjnl-2014-308778"},{"key":"e_1_3_2_53_2","doi-asserted-by":"publisher","DOI":"10.1038\/srep16643"},{"key":"e_1_3_2_54_2","doi-asserted-by":"publisher","DOI":"10.1155\/1998\/538090"},{"key":"e_1_3_2_55_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt344"},{"key":"e_1_3_2_56_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/45.5.691"},{"key":"e_1_3_2_57_2","doi-asserted-by":"publisher","DOI":"10.4103\/0974-2727.78558"},{"key":"e_1_3_2_58_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0531-y"},{"key":"e_1_3_2_59_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.1999.01619.x"},{"key":"e_1_3_2_60_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2012.8"},{"key":"e_1_3_2_61_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41587-019-0209-9"},{"key":"e_1_3_2_62_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3869"},{"key":"e_1_3_2_63_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkf436"},{"key":"e_1_3_2_64_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0009490"},{"key":"e_1_3_2_65_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-018-0470-z"},{"key":"e_1_3_2_66_2","doi-asserted-by":"publisher","DOI":"10.1038\/ismej.2011.139"},{"key":"e_1_3_2_67_2","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00219-18"},{"key":"e_1_3_2_68_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0048558"}],"container-title":["mSphere"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSphere.00982-20","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSphere.00982-20","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,8]],"date-time":"2022-03-08T04:46:26Z","timestamp":1646714786000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/mSphere.00982-20"}},"subtitle":[],"editor":[{"given":"Aaron P.","family":"Mitchell","sequence":"additional","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2021,2,24]]},"references-count":67,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,2,24]]}},"alternative-id":["10.1128\/mSphere.00982-20"],"URL":"https:\/\/doi.org\/10.1128\/msphere.00982-20","relation":{},"ISSN":["2379-5042"],"issn-type":[{"value":"2379-5042","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,2,24]]},"assertion":[{"value":"2020-09-24","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-12-18","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2021-01-20","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00982-20"}}