{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,24]],"date-time":"2026-09-24T01:12:35Z","timestamp":1790212355724,"version":"4.1.0"},"reference-count":99,"publisher":"American Society for Microbiology","issue":"1","license":[{"start":{"date-parts":[[2019,2,19]],"date-time":"2019-02-19T00:00:00Z","timestamp":1550534400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/doi.org\/10.1128\/AuthorWarrantyLicense.v1"},{"start":{"date-parts":[[2019,2,26]],"date-time":"2019-02-26T00:00:00Z","timestamp":1551139200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000060","name":"HHS | NIH | National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["ZIA AI000796-22"],"award-info":[{"award-number":["ZIA AI000796-22"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mSystems"],"published-print":{"date-parts":[[2019,2,26]]},"abstract":"<jats:p>\n            <jats:named-content content-type=\"genus-species\">Y. pestis<\/jats:named-content>\n            emerged as a highly virulent, arthropod-transmitted pathogen on the basis of relatively few and discrete genetic changes from\n            <jats:named-content content-type=\"genus-species\">Y. pseudotuberculosis<\/jats:named-content>\n            . Parallel comparisons of the\n            <jats:italic>in vitro<\/jats:italic>\n            and\n            <jats:italic>in vivo<\/jats:italic>\n            transcriptomes of\n            <jats:named-content content-type=\"genus-species\">Y. pestis<\/jats:named-content>\n            and two\n            <jats:named-content content-type=\"genus-species\">Y. pseudotuberculosis<\/jats:named-content>\n            variants that produce a nontransmissible infection and a transmissible infection of the flea vector, respectively, provided insights into how\n            <jats:named-content content-type=\"genus-species\">Y. pestis<\/jats:named-content>\n            has adapted to life in its flea vector and point to evolutionary changes in the regulation of metabolic and biofilm development pathways in these two closely related species.\n          <\/jats:p>","DOI":"10.1128\/msystems.00217-18","type":"journal-article","created":{"date-parts":[[2019,2,18]],"date-time":"2019-02-18T14:29:11Z","timestamp":1550500151000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":20,"title":["Differential Gene Expression Patterns of\n            <i>Yersinia pestis<\/i>\n            and\n            <i>Yersinia pseudotuberculosis<\/i>\n            during Infection and Biofilm Formation in the Flea Digestive Tract"],"prefix":"10.1128","volume":"4","author":[{"given":"Iman","family":"Chouikha","sequence":"first","affiliation":[{"name":"Laboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel E.","family":"Sturdevant","sequence":"additional","affiliation":[{"name":"Genomics Unit, Research Technologies Branch, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Clayton","family":"Jarrett","sequence":"additional","affiliation":[{"name":"Laboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yi-Cheng","family":"Sun","sequence":"additional","affiliation":[{"name":"MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B. Joseph","family":"Hinnebusch","sequence":"additional","affiliation":[{"name":"Laboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.96.24.14043"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1205750110"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2015.10.009"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-micro-090816-093521"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.273.5273.367"},{"key":"e_1_3_2_7_2","doi-asserted-by":"publisher","DOI":"10.1086\/422695"},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1006859"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01181-08"},{"key":"e_1_3_2_10_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-2920.2007.01554.x"},{"key":"e_1_3_2_11_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro2415"},{"key":"e_1_3_2_12_2","doi-asserted-by":"publisher","DOI":"10.1038\/417243a"},{"key":"e_1_3_2_13_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.chom.2014.04.003"},{"key":"e_1_3_2_14_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1069972"},{"key":"e_1_3_2_15_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1413209111"},{"key":"e_1_3_2_16_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2958.2000.01993.x"},{"key":"e_1_3_2_17_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.188.4.1381-1388.2006"},{"key":"e_1_3_2_18_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00482-15"},{"key":"e_1_3_2_19_2","doi-asserted-by":"publisher","DOI":"10.1128\/jb.172.10.5929-5937.1990"},{"key":"e_1_3_2_20_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0378-1119(97)00071-1"},{"key":"e_1_3_2_21_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00821"},{"key":"e_1_3_2_22_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0005276"},{"key":"e_1_3_2_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.188.3.1113-1119.2006"},{"key":"e_1_3_2_24_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.186.6.1638-1647.2004"},{"key":"e_1_3_2_25_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-7-96"},{"key":"e_1_3_2_26_2","volume-title":"Yersinia: systems biology and control.","author":"Hinnebusch BJ","year":"2012","unstructured":"Hinnebusch BJ, Sebbane F, Vadyvaloo V. 2012. Transcriptional profiling of the Yersinia pestis life cycle. In Carniel E, Hinnebusch BJ (ed), Yersinia: systems biology and control. Horizon Scientific Press, Norwich, United Kingdom."},{"key":"e_1_3_2_27_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0019267"},{"key":"e_1_3_2_28_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2010.07470.x"},{"key":"e_1_3_2_29_2","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-micro-090816-093325"},{"key":"e_1_3_2_30_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro.2016.190"},{"key":"e_1_3_2_31_2","doi-asserted-by":"publisher","DOI":"10.3390\/pathogens6040051"},{"key":"e_1_3_2_32_2","doi-asserted-by":"publisher","DOI":"10.4161\/viru.25338"},{"key":"e_1_3_2_33_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2014.02.008"},{"key":"e_1_3_2_34_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00110-14"},{"key":"e_1_3_2_35_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00880-13"},{"key":"e_1_3_2_36_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.58.8.2569-2577.1990"},{"key":"e_1_3_2_37_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1000783"},{"key":"e_1_3_2_38_2","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.000082"},{"key":"e_1_3_2_39_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.01125-07"},{"key":"e_1_3_2_40_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.05307-11"},{"key":"e_1_3_2_41_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2018.00208"},{"key":"e_1_3_2_42_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2007.05729.x"},{"key":"e_1_3_2_43_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1462-5822.2007.00986.x"},{"key":"e_1_3_2_44_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2180-12-296"},{"key":"e_1_3_2_45_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00648-13"},{"key":"e_1_3_2_46_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2006.05458.x"},{"key":"e_1_3_2_47_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0137508"},{"key":"e_1_3_2_48_2","doi-asserted-by":"publisher","DOI":"10.1098\/rsob.150198"},{"key":"e_1_3_2_49_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-017-00534-9"},{"key":"e_1_3_2_50_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.186.17.5692-5698.2004"},{"key":"e_1_3_2_51_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.187.4.1474-1484.2005"},{"key":"e_1_3_2_52_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.00003-12"},{"key":"e_1_3_2_53_2","doi-asserted-by":"publisher","DOI":"10.1128\/ecosalplus.8.3.1.3"},{"key":"e_1_3_2_54_2","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.MB-0001-2014"},{"key":"e_1_3_2_55_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.67.8.3879-3892.1999"},{"key":"e_1_3_2_56_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2018.00047"},{"key":"e_1_3_2_57_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.72.12.7334-7337.2004"},{"key":"e_1_3_2_58_2","doi-asserted-by":"publisher","DOI":"10.1021\/pr101299j"},{"key":"e_1_3_2_59_2","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M114.612986"},{"key":"e_1_3_2_60_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1606360113"},{"key":"e_1_3_2_61_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2008.01.006"},{"key":"e_1_3_2_62_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00203-011-0680-2"},{"key":"e_1_3_2_63_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2009.08.005"},{"key":"e_1_3_2_64_2","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.022160-0"},{"key":"e_1_3_2_65_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0066615"},{"key":"e_1_3_2_66_2","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.12996"},{"key":"e_1_3_2_67_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1005020"},{"key":"e_1_3_2_68_2","doi-asserted-by":"publisher","DOI":"10.1007\/s12275-015-0099-6"},{"key":"e_1_3_2_69_2","doi-asserted-by":"publisher","DOI":"10.1111\/1462-2920.12005"},{"key":"e_1_3_2_70_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0603456103"},{"key":"e_1_3_2_71_2","doi-asserted-by":"publisher","DOI":"10.1111\/mpp.12159"},{"key":"e_1_3_2_72_2","doi-asserted-by":"publisher","DOI":"10.1111\/1758-2229.12358"},{"key":"e_1_3_2_73_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0170770"},{"key":"e_1_3_2_74_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2012.09.009"},{"key":"e_1_3_2_75_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2018.00260"},{"key":"e_1_3_2_76_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijmm.2011.03.004"},{"key":"e_1_3_2_77_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4614-3561-7_36"},{"key":"e_1_3_2_78_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3185"},{"key":"e_1_3_2_79_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.tim.2008.11.001"},{"key":"e_1_3_2_80_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0923-2508(02)00012-8"},{"key":"e_1_3_2_81_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.mib.2005.02.015"},{"key":"e_1_3_2_82_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6968.2006.00280.x"},{"key":"e_1_3_2_83_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2004.04036.x"},{"key":"e_1_3_2_84_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1438-4221(00)80070-3"},{"key":"e_1_3_2_85_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-170"},{"key":"e_1_3_2_86_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/30.1.207"},{"key":"e_1_3_2_87_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.59.12.4310-4317.1991"},{"key":"e_1_3_2_88_2","doi-asserted-by":"publisher","DOI":"10.1016\/S0928-8244(03)00181-0"},{"key":"e_1_3_2_89_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.120163297"},{"key":"e_1_3_2_90_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00281-10"},{"key":"e_1_3_2_91_2","doi-asserted-by":"publisher","DOI":"10.1128\/iai.51.2.445-454.1986"},{"key":"e_1_3_2_92_2","doi-asserted-by":"publisher","DOI":"10.1128\/am.18.5.834-837.1969"},{"key":"e_1_3_2_93_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.74.3.1768-1776.2006"},{"key":"e_1_3_2_94_2","doi-asserted-by":"publisher","DOI":"10.1038\/35097083"},{"key":"e_1_3_2_95_2","doi-asserted-by":"publisher","DOI":"10.1128\/JB.184.16.4601-4611.2002"},{"key":"e_1_3_2_96_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0404012101"},{"key":"e_1_3_2_97_2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt1183-784"},{"key":"e_1_3_2_98_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.plasmid.2004.02.003"},{"key":"e_1_3_2_99_2","doi-asserted-by":"publisher","DOI":"10.1016\/0378-1119(95)00193-A"},{"key":"e_1_3_2_100_2","doi-asserted-by":"publisher","DOI":"10.1016\/0378-1119(93)90766-V"}],"container-title":["mSystems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/msystems.00217-18","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/msystems.00217-18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,8,11]],"date-time":"2024-08-11T19:02:07Z","timestamp":1723402927000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/msystems.00217-18"}},"subtitle":[],"editor":[{"given":"Seth","family":"Bordenstein","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2019,2,26]]},"references-count":99,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2019,2,26]]}},"alternative-id":["10.1128\/msystems.00217-18"],"URL":"https:\/\/doi.org\/10.1128\/msystems.00217-18","relation":{},"ISSN":["2379-5077"],"issn-type":[{"value":"2379-5077","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,2,26]]},"assertion":[{"value":"2018-09-19","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-01-27","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-02-19","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"10.1128\/msystems.00217-18"}}