{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,25]],"date-time":"2026-09-25T12:36:45Z","timestamp":1790339805700,"version":"4.1.0"},"reference-count":70,"publisher":"American Society for Microbiology","issue":"6","license":[{"start":{"date-parts":[[2020,11,24]],"date-time":"2020-11-24T00:00:00Z","timestamp":1606176000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2020,12,22]],"date-time":"2020-12-22T00:00:00Z","timestamp":1608595200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["mSystems"],"published-print":{"date-parts":[[2020,12,22]]},"abstract":"<jats:p>\n                    Antibiotic resistance (AR) is one of the major public health threats and challenges to effective containment and treatment of infectious bacterial diseases worldwide. Here, we used different methods to map out the geographical hot spots, sources, and evolutionary epidemiology of AR.\n                    <jats:named-content content-type=\"genus-species\">Escherichia coli<\/jats:named-content>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Klebsiella pneumoniae<\/jats:named-content>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Salmonella enterica<\/jats:named-content>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Acinetobacter baumannii<\/jats:named-content>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Pseudomonas aeruginosa<\/jats:named-content>\n                    ,\n                    <jats:italic>Enterobacter<\/jats:italic>\n                    spp.,\n                    <jats:italic>Neisseria meningitis\/gonorrhoeae<\/jats:italic>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Vibrio cholerae<\/jats:named-content>\n                    ,\n                    <jats:named-content content-type=\"genus-species\">Campylobacter jejuni<\/jats:named-content>\n                    , etc., were common pathogens shuttling AR genes in Africa. Transmission of the same clones\/strains across countries and between animals, humans, plants, and the environment was observed. We recommend\n                    <jats:italic>Enterobacter<\/jats:italic>\n                    spp. or\n                    <jats:named-content content-type=\"genus-species\">K. pneumoniae<\/jats:named-content>\n                    as better sentinel species for AR surveillance.\n                  <\/jats:p>","DOI":"10.1128\/msystems.00897-20","type":"journal-article","created":{"date-parts":[[2020,11,24]],"date-time":"2020-11-24T10:29:23Z","timestamp":1606213763000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":65,"title":["Genomic and Resistance Epidemiology of Gram-Negative Bacteria in Africa: a Systematic Review and Phylogenomic Analyses from a One Health Perspective"],"prefix":"10.1128","volume":"5","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9508-984X","authenticated-orcid":false,"given":"John","family":"Osei Sekyere","sequence":"first","affiliation":[{"name":"Department of Medical Microbiology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Melese Abate","family":"Reta","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology, School of Medicine, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1111\/nyas.14254"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.aaw1944"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1155\/2014\/531952"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.3389\/fpubh.2016.00209"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-019-08853-3"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.3389\/fimmu.2018.03187"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1080\/10158782.2011.11441455"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1016\/S2214-109X(16)30292-3"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1136\/bmj.l5820"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2019.00273"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1086\/319594"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00114-16"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1097\/QCO.0b013e32834a88af"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00083-15"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.00832"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.2217\/fmb-2017-0172"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1111\/1758-2229.12735"},{"key":"e_1_3_3_19_2","volume-title":"Global antimicrobial resistance surveillance system (GLASS) report","author":"WHO","year":"2017","unstructured":"WHO. 2017. Global antimicrobial resistance surveillance system (GLASS) report. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.3205\/dgkh000290"},{"key":"e_1_3_3_21_2","volume-title":"Global priority list of antibiotic-resistant bacteria to guide research, discovery, and development of new antibiotics","author":"World Health Organization","year":"2017","unstructured":"World Health Organization. 2017. Global priority list of antibiotic-resistant bacteria to guide research, discovery, and development of new antibiotics. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_3_22_2","volume-title":"WHO. Antimicrobial resistance","author":"World Health Organization","year":"2017","unstructured":"World Health Organization. 2017. WHO. Antimicrobial resistance. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2017.0383"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13073-017-0471-8"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1097\/QCO.0000000000000182"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2017.07.002"},{"key":"e_1_3_3_27_2","first-page":"898790","article-title":"Prevalence of multidrug resistance among Salmonella enterica serovar Typhimurium isolated from pig faeces in Ashanti Region, Ghana","volume":"2015","author":"Sekyere JO","year":"2015","unstructured":"Sekyere JO, Adu F. 2015. Prevalence of multidrug resistance among Salmonella enterica serovar Typhimurium isolated from pig faeces in Ashanti Region, Ghana. Int J Antibiot 2015:898790.","journal-title":"Int J Antibiot"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.7196\/SAMJ.2015.v105i12.9926"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1080\/23120053.2015.1118819"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00266-18"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0123337"},{"key":"e_1_3_3_32_2","volume-title":"Global action plan on antimicrobial resistance","author":"World Health Organization","year":"2015","unstructured":"World Health Organization. 2015. Global action plan on antimicrobial resistance. World Health Organization, Geneva, Switzerland."},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(15)00424-7"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02178-17"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2016.0191"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-58012-8"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.1111\/nyas.14223"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-019-0492-8"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.00542"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2017.09.008"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00649-18"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1128\/mSystems.00148-20"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-52859-2"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.3923\/pjbs.2013.1076.1085"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-019-4391-7"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgar.2019.09.014"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01166-17"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.01217"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10096-018-3428-y"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2015.09.008"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1007\/s11356-014-2980-y"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.3201\/eid2310.161625"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02812-15"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dks091"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-019-3766-0"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-019-4394-4"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.7573\/dic.212527"},{"key":"e_1_3_3_58_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00058-16"},{"key":"e_1_3_3_59_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2015.0053"},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.14745\/ccdr.v45i23a01"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(18)30274-3"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1473-3099(18)30122-1"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.4084\/MJHID.2018.051"},{"key":"e_1_3_3_64_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vaccine.2018.03.025"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1111\/nyas.14237"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1111\/lam.13237"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1111\/jam.12918"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-63267-2"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.578"},{"key":"e_1_3_3_70_2","doi-asserted-by":"publisher","DOI":"10.1002\/mbo3.682"},{"key":"e_1_3_3_71_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pmed.1000097"}],"container-title":["mSystems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSystems.00897-20","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/mSystems.00897-20","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,14]],"date-time":"2022-03-14T15:55:06Z","timestamp":1647273306000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/mSystems.00897-20"}},"subtitle":[],"editor":[{"given":"Zarath M.","family":"Summers","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2020,12,22]]},"references-count":70,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2020,12,22]]}},"alternative-id":["10.1128\/mSystems.00897-20"],"URL":"https:\/\/doi.org\/10.1128\/msystems.00897-20","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2020.04.09.20059766","asserted-by":"object"}]},"ISSN":["2379-5077"],"issn-type":[{"value":"2379-5077","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,12,22]]},"assertion":[{"value":"2020-09-08","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-10-28","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-11-24","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00897-20"}}