{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,2]],"date-time":"2026-10-02T02:49:48Z","timestamp":1790909388652,"version":"4.1.0"},"reference-count":16,"publisher":"American Society for Microbiology","issue":"10","license":[{"start":{"date-parts":[[2024,10,3]],"date-time":"2024-10-03T00:00:00Z","timestamp":1727913600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2024,10,3]],"date-time":"2024-10-03T00:00:00Z","timestamp":1727913600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"name":"Japanese Ministry of Health, Labor and Welfare","award":["21KA1004,24KA1005"],"award-info":[{"award-number":["21KA1004,24KA1005"]}]},{"DOI":"10.13039\/100009619","name":"Japan Agency for Medical Research and Development","doi-asserted-by":"crossref","award":["JP23fk0108604,JP24fk0108665"],"award-info":[{"award-number":["JP23fk0108604,JP24fk0108665"]}],"id":[{"id":"10.13039\/100009619","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["22K07067"],"award-info":[{"award-number":["22K07067"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100009619","name":"Japan Agency for Medical Research and Development","doi-asserted-by":"crossref","award":["JP23gm1610003,JP23fk0108665,JP23wm0225029"],"award-info":[{"award-number":["JP23gm1610003,JP23fk0108665,JP23wm0225029"]}],"id":[{"id":"10.13039\/100009619","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001700","name":"Ministry of Education, Culture, Sports, Science and Technology","doi-asserted-by":"crossref","award":["22K16368"],"award-info":[{"award-number":["22K16368"]}],"id":[{"id":"10.13039\/501100001700","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Microbiol Spectr"],"published-print":{"date-parts":[[2024,10,3]]},"abstract":"ABSTRACT<\/jats:title>\n \n \n \n We present the identification and characterization of the complete genome of metronidazole (MTZ)-resistant\n Prevotella bivia<\/jats:italic>\n strain TOH-2715 [minimum inhibitory concentration (MIC): 8 mg\/L], isolated from the urine of an elderly Japanese woman, as well as details of its mobile genetic elements (MGEs) containing antimicrobial resistance (AMR) genes and its relationship with other bacterial species determined using whole-genome sequencing (WGS) data. TOH-2715 possessed two chromosomes with putative MGEs containing AMR genes. Two AMR-related MGE regions were present in chromosome 2. MGE-region 1 (7,821 bp) included Tn\n 6456<\/jats:italic>\n , where\n nimK<\/jats:italic>\n was located, and MGE-region 2 (58.8 Kbp) included the integrative and conjugative element (ICE), where\n tet<\/jats:italic>\n (Q) and\n ermF<\/jats:italic>\n were located. The genetic structure of the ICE of TOH-2715 was similar to that of CTn\n DOT<\/jats:italic>\n -family transposons, where\n ermF<\/jats:italic>\n and\n tet<\/jats:italic>\n (Q) are located. A search of public databases revealed that\n nimK<\/jats:italic>\n was present in\n Prevotella<\/jats:italic>\n spp., including\n P. bivia<\/jats:italic>\n , and was partially composed of a Tn\n 6456<\/jats:italic>\n -like element lacking the efflux transporter gene\n qacE<\/jats:italic>\n and the Crp\/Fnr family transcriptional regulator gene in some cases. Core ICE gene analysis showed that ICEs similar to that of TOH-2715 were present in\n Prevotella<\/jats:italic>\n spp. and\n Bacteroides<\/jats:italic>\n spp., suggesting horizontal gene transfer among anaerobes. This is the report of WGS analysis of an MTZ-resistant clinical strain of\n P. bivia<\/jats:italic>\n (TOH-2715) with Tn\n 6456<\/jats:italic>\n encoding\n nimK<\/jats:italic>\n . Other submitted genomes have described the presence of\n nimK<\/jats:italic>\n , but none of them have described MTZ resistance. Additionally, we described putative MGE regions containing the AMR gene within the genus\n Prevotella<\/jats:italic>\n and among anaerobes, raising concerns about the future spread of\n nimK<\/jats:italic>\n among anaerobes.\n <\/jats:p>\n <\/jats:sec>\n \n IMPORTANCE<\/jats:title>\n \n Metronidazole (MTZ) is an important antimicrobial agent in anaerobic infections and is widely used in clinical settings. The rate of MTZ resistance in anaerobic bacteria has been increasing in recent years, and the\n nim<\/jats:italic>\n gene (nitro-imidazole reductase) is one of the resistance mechanisms.\n Prevotella bivia<\/jats:italic>\n is found in humans in the urinary tract and vagina and is known to cause infections in some cases. One of the\n nim<\/jats:italic>\n genes,\n nimK<\/jats:italic>\n , has recently been discovered in this species of bacteria, but there are no reports of antimicrobial resistance (AMR)-related regions in its whole genome level. In this study, we analyzed the AMR region of\n nimK<\/jats:italic>\n -positive\n P. bivia<\/jats:italic>\n derived from clinical specimens based on comparisons with other anaerobic genomes.\n P. bivia<\/jats:italic>\n was found to be engaged in horizontal gene transfer with other anaerobic bacteria, and the future spread of the\n nimK<\/jats:italic>\n gene is a concern.\n <\/jats:p>\n <\/jats:sec>","DOI":"10.1128\/spectrum.00562-24","type":"journal-article","created":{"date-parts":[[2024,8,20]],"date-time":"2024-08-20T13:05:46Z","timestamp":1724159146000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":7,"title":["The emergence of metronidazole-resistant\n Prevotella bivia<\/i>\n harboring\n nimK<\/i>\n gene in Japan"],"prefix":"10.1128","volume":"12","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9188-3798","authenticated-orcid":false,"given":"Yukitaka","family":"Ito","sequence":"first","affiliation":[{"name":"Division of Clinical Microbiology Laboratory, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"},{"name":"Department of Infection and Prevention, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1086-9995","authenticated-orcid":false,"given":"Yusuke","family":"Hashimoto","sequence":"additional","affiliation":[{"name":"Department of Bacteriology, Gunma University Graduate School of Medicine, Maebashi, Gunma, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8975-2193","authenticated-orcid":true,"given":"Masato","family":"Suzuki","sequence":"additional","affiliation":[{"name":"Antimicrobial Resistance Research Center, National Institute of Infectious Diseases, Higashimurayama, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Naomi","family":"Kaneko","sequence":"additional","affiliation":[{"name":"Division of Clinical Microbiology Laboratory, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mieko","family":"Yoshida","sequence":"additional","affiliation":[{"name":"Division of Clinical Microbiology Laboratory, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haruo","family":"Nakayama","sequence":"additional","affiliation":[{"name":"Division of Clinical Microbiology Laboratory, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"},{"name":"Department of Infection and Prevention, Toho University Ohashi Medical Center, Meguro, Tokyo, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9969-2235","authenticated-orcid":true,"given":"Haruyoshi","family":"Tomita","sequence":"additional","affiliation":[{"name":"Department of Bacteriology, Gunma University Graduate School of Medicine, Maebashi, Gunma, Japan"},{"name":"Laboratory of Bacterial Drug Resistance, Gunma University Graduate School of Medicine, Maebashi, Gunma, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_4_2_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.798763"},{"key":"e_1_3_4_3_2","doi-asserted-by":"publisher","DOI":"10.1086\/647939"},{"key":"e_1_3_4_4_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkl285"},{"key":"e_1_3_4_5_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkt344"},{"key":"e_1_3_4_6_2","doi-asserted-by":"publisher","DOI":"10.1016\/0147-619x(89)90060-7"},{"key":"e_1_3_4_7_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.38.5.1047"},{"key":"e_1_3_4_8_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.anaerobe.2018.10.004"},{"key":"e_1_3_4_9_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2023.0125"},{"key":"e_1_3_4_10_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dky236"},{"key":"e_1_3_4_11_2","unstructured":"European Committee on Antimicrobial Susceptibility Testing (EUCAST). 2020. Breakpoint tables for interpretation of MICs and zone diameters. Version10.0. Available from: http:\/\/www.eucast.org"},{"key":"e_1_3_4_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/jcm.34.9.2078-2084.1996"},{"key":"e_1_3_4_13_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgar.2023.10.009"},{"key":"e_1_3_4_14_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmi.2019.02.017"},{"key":"e_1_3_4_15_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.anaerobe.2023.102722"},{"key":"e_1_3_4_16_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.anaerobe.2022.102688"},{"key":"e_1_3_4_17_2","doi-asserted-by":"publisher","DOI":"10.1128\/mBio.01305-14"}],"container-title":["Microbiology Spectrum"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.00562-24","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.00562-24","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,10,3]],"date-time":"2024-10-03T13:04:52Z","timestamp":1727960692000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.00562-24"}},"subtitle":[],"editor":[{"given":"Daria","family":"Van Tyne","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2024,10,3]]},"references-count":16,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2024,10,3]]}},"alternative-id":["10.1128\/spectrum.00562-24"],"URL":"https:\/\/doi.org\/10.1128\/spectrum.00562-24","relation":{},"ISSN":["2165-0497"],"issn-type":[{"value":"2165-0497","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,10,3]]},"assertion":[{"value":"2024-03-02","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2024-07-03","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2024-08-20","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e00562-24"}}