{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T20:49:47Z","timestamp":1793134187771,"version":"4.5.0"},"reference-count":78,"publisher":"American Society for Microbiology","issue":"6","license":[{"start":{"date-parts":[[2022,12,21]],"date-time":"2022-12-21T00:00:00Z","timestamp":1671580800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2022,12,21]],"date-time":"2022-12-21T00:00:00Z","timestamp":1671580800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Microbiol Spectr"],"published-print":{"date-parts":[[2022,12,21]]},"abstract":"<jats:p>\n            Whole-genome sequencing studies of pathogens causing infectious diseases are seriously lacking in Armenia, hampering global efforts to track, trace and contain infectious disease outbreaks. In this study, we report for the first-time the whole-genome sequencing and analysis of ESBL UPEC ST127 isolates recovered from hospitalized patients in Armenia and compare them with other\n            <jats:named-content content-type=\"genus-species\">E. coli<\/jats:named-content>\n            ST127 retrieved from the ENA.\n          <\/jats:p>","DOI":"10.1128\/spectrum.02511-22","type":"journal-article","created":{"date-parts":[[2022,11,23]],"date-time":"2022-11-23T14:01:33Z","timestamp":1669212093000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":8,"title":["An Emerging Lineage of Uropathogenic Extended Spectrum \u03b2-Lactamase Escherichia coli ST127"],"prefix":"10.1128","volume":"10","author":[{"given":"Rory","family":"Cave","sequence":"first","affiliation":[{"name":"School of Biomedical Sciences, University of West London, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mary M.","family":"Ter-Stepanyan","sequence":"additional","affiliation":[{"name":"Yerevan State Medical University after Mkhitar Heratsi, Faculty of Public Health, Department of Epidemiology, Yerevan, Republic of Armenia"},{"name":"Research Center of Maternal and Child Health Protection, Yerevan, Armenia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nune","family":"Kotsinyan","sequence":"additional","affiliation":[{"name":"National Centre for Disease Control and Prevention, Yerevan, Armenia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7339-7297","authenticated-orcid":true,"given":"Hermine V.","family":"Mkrtchyan","sequence":"additional","affiliation":[{"name":"School of Biomedical Sciences, University of West London, London, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1038\/nrmicro3432"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.33073\/pjm-2019-048"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511722240.133"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13099-019-0290-0"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkr451"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00135-18"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0244358"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.02065"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0179880"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2016.00173"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6976.2008.00136.x"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1469-0691.2007.01867.x"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1093\/jacamr\/dlac048"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.4103\/ijabmr.IJABMR_360_19"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-021-01013-7"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.crmicr.2022.100106"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12941-021-00470-7"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2018.01217"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1128\/ecosalplus.ESP-0004-2017"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.1007\/s10096-021-04379-z"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-021-00931-w"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1093\/med\/9780199733507.003.0010"},{"key":"e_1_3_3_24_2","unstructured":"Data for Armenia Upper middle income. Data. World Bank. https:\/\/data.worldbank.org\/?locations=AM-XT. Retrieved 18 May 2022."},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13756-017-0169-0"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.01592"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1002\/cpbi.102"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4419-6327-7_10"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1177\/1040638717729395"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.43.6.2965-2968.2005"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02200-13"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics10040351"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.bbamem.2015.08.015"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41385-019-0225-6"},{"key":"e_1_3_3_35_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz380"},{"key":"e_1_3_3_36_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2014.00080"},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2022.824039"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1128\/JVI.01031-17"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.089615.108"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2019.00065"},{"key":"e_1_3_3_41_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00527-07"},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2017.00241"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1006\/bbrc.2001.6255"},{"key":"e_1_3_3_44_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmicrobiol.2016.251"},{"key":"e_1_3_3_45_2","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.00016-06"},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1128\/MMBR.64.2.412-434.2000"},{"key":"e_1_3_3_47_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1405336111"},{"key":"e_1_3_3_48_2","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2016.0033"},{"key":"e_1_3_3_49_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.02002"},{"key":"e_1_3_3_50_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jmii.2016.07.004"},{"key":"e_1_3_3_51_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.plasmid.2019.102444"},{"key":"e_1_3_3_52_2","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S210554"},{"key":"e_1_3_3_53_2","doi-asserted-by":"publisher","DOI":"10.1128\/mSphere.00917-20"},{"key":"e_1_3_3_54_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000108"},{"key":"e_1_3_3_55_2","doi-asserted-by":"publisher","DOI":"10.1186\/1757-4749-6-32"},{"key":"e_1_3_3_56_2","doi-asserted-by":"publisher","DOI":"10.1093\/ofid\/ofz431"},{"key":"e_1_3_3_57_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0054223"},{"key":"e_1_3_3_58_2","unstructured":"The European Committee on Antimicrobial Susceptibility Testing. Breakpoint tables for interpretation of MICs and zone diameters. Version 11.0 2021. http:\/\/www.eucast.org."},{"key":"e_1_3_3_59_2","unstructured":"Babraham Bioinformatics. FastQC: a quality control tool for high throughput sequence data. https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/. Retrieved 16 November 2021."},{"key":"e_1_3_3_60_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-014-0524-x"},{"key":"e_1_3_3_61_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msu300"},{"key":"e_1_3_3_62_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msx281"},{"key":"e_1_3_3_63_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.4285"},{"key":"e_1_3_3_64_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkab301"},{"key":"e_1_3_3_65_2","doi-asserted-by":"publisher","DOI":"10.1093\/ve\/vey016"},{"key":"e_1_3_3_66_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu153"},{"key":"e_1_3_3_67_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02412-14"},{"key":"e_1_3_3_68_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gki008"},{"key":"e_1_3_3_69_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.03617-13"},{"key":"e_1_3_3_70_2","first-page":"D517","article-title":"CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database","volume":"48","author":"Alcock BP","year":"2020","unstructured":"Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran H-K, Werfalli RE, Nasir JA, Oloni M, Speicher DJ, Florescu A, Singh B, Faltyn M, Hernandez-Koutoucheva A, Sharma AN, Bordeleau E, Pawlowski AC, Zubyk HL, Dooley D, Griffiths E, Maguire F, Winsor GL, Beiko RG, Brinkman FSL, Hsiao WWL, Domselaar GV, McArthur AG. 2020. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res 48:D517\u2013D525.","journal-title":"Nucleic Acids Res"},{"key":"e_1_3_3_71_2","article-title":"ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data","volume":"7","author":"Bessonov K","year":"2021","unstructured":"Bessonov K, Laing C, Robertson J, Yong I, Ziebell K, Gannon VPJ, Nichani A, Arya G, Nash JHE, Christianson S. 2021. ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data. Microb Genom 7.","journal-title":"Microb Genom"},{"key":"e_1_3_3_72_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv421"},{"key":"e_1_3_3_73_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-1108-8"},{"key":"e_1_3_3_74_2","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/mst010"},{"key":"e_1_3_3_75_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.2289704"},{"key":"e_1_3_3_76_2","article-title":"MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies","volume":"4","author":"Robertson J","year":"2018","unstructured":"Robertson J, Nash JHE. 2018. MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. Microb Genom 4.","journal-title":"Microb Genom"},{"key":"e_1_3_3_77_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1123"},{"key":"e_1_3_3_78_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz268"},{"key":"e_1_3_3_79_2","doi-asserted-by":"publisher","DOI":"10.12688\/wellcomeopenres.14694.1"}],"container-title":["Microbiology Spectrum"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.02511-22","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.02511-22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,12,21]],"date-time":"2022-12-21T14:40:36Z","timestamp":1671633636000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.02511-22"}},"subtitle":[],"editor":[{"given":"Bonnie Chase","family":"Prokesch","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2022,12,21]]},"references-count":78,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2022,12,21]]}},"alternative-id":["10.1128\/spectrum.02511-22"],"URL":"https:\/\/doi.org\/10.1128\/spectrum.02511-22","relation":{},"ISSN":["2165-0497"],"issn-type":[{"value":"2165-0497","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,12,21]]},"assertion":[{"value":"2022-07-01","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2022-11-08","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2022-11-23","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e02511-22"}}