{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,26]],"date-time":"2026-08-26T23:39:38Z","timestamp":1787787578934,"version":"build-2784847793"},"reference-count":45,"publisher":"American Society for Microbiology","issue":"1","license":[{"start":{"date-parts":[[2023,2,14]],"date-time":"2023-02-14T00:00:00Z","timestamp":1676332800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2023,2,14]],"date-time":"2023-02-14T00:00:00Z","timestamp":1676332800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["Graduate Research Fellowship Program (GRFP)"],"award-info":[{"award-number":["Graduate Research Fellowship Program (GRFP)"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000060","name":"HHS | NIH | National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["AI138079-02"],"award-info":[{"award-number":["AI138079-02"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["Microbiol Spectr"],"published-print":{"date-parts":[[2023,2,14]]},"abstract":"<jats:p>\n                    Bacteremia mortality is known to increase rapidly with time after infection, making rapid diagnostics and treatment necessary. Successful treatment depends on correct administration of antibiotics based on knowledge of strain antibiotic susceptibility.\n                    <jats:named-content content-type=\"genus-species\">Staphylococcus aureus<\/jats:named-content>\n                    is a major causative agent of bacteremia that is also commonly antibiotic resistant.\n                  <\/jats:p>","DOI":"10.1128\/spectrum.02728-22","type":"journal-article","created":{"date-parts":[[2023,1,23]],"date-time":"2023-01-23T09:00:59Z","timestamp":1674464459000},"update-policy":"https:\/\/doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":8,"title":["Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains"],"prefix":"10.1128","volume":"11","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7324-8678","authenticated-orcid":true,"given":"Abraham G.","family":"Moller","sequence":"first","affiliation":[{"name":"Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA"},{"name":"Microbiology and Molecular Genetics (MMG), Graduate Division of Biological and Biomedical Sciences (GDBBS), Emory University, Atlanta, Georgia, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"suffix":"III","given":"Robert A.","family":"Petit","sequence":"additional","affiliation":[{"name":"Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA"},{"name":"Theiagen Genomics, Highlands Ranch, Colorado, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michelle H.","family":"Davis","sequence":"additional","affiliation":[{"name":"Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8966-9680","authenticated-orcid":true,"given":"Timothy D.","family":"Read","sequence":"additional","affiliation":[{"name":"Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"235","reference":[{"key":"e_1_3_3_2_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.10.3.505"},{"key":"e_1_3_3_3_2","doi-asserted-by":"publisher","DOI":"10.1086\/427701"},{"key":"e_1_3_3_4_2","doi-asserted-by":"publisher","DOI":"10.1128\/CMR.00042-09"},{"key":"e_1_3_3_5_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1090956"},{"key":"e_1_3_3_6_2","doi-asserted-by":"publisher","DOI":"10.1056\/NEJMoa025025"},{"key":"e_1_3_3_7_2","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evu092"},{"key":"e_1_3_3_8_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.43.10.2565"},{"key":"e_1_3_3_9_2","doi-asserted-by":"publisher","DOI":"10.1086\/381202"},{"key":"e_1_3_3_10_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.00422-06"},{"key":"e_1_3_3_11_2","doi-asserted-by":"publisher","DOI":"10.1086\/381093"},{"key":"e_1_3_3_12_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02302-10"},{"key":"e_1_3_3_13_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01536-14"},{"key":"e_1_3_3_14_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00221-09"},{"key":"e_1_3_3_15_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-016-1103-0"},{"key":"e_1_3_3_16_2","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1727-y"},{"key":"e_1_3_3_17_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-019-0663-0"},{"key":"e_1_3_3_18_2","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkw397"},{"key":"e_1_3_3_19_2","doi-asserted-by":"publisher","DOI":"10.1186\/s40168-019-0703-9"},{"key":"e_1_3_3_20_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw1328"},{"key":"e_1_3_3_21_2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.01672"},{"key":"e_1_3_3_22_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41564-019-0656-6"},{"key":"e_1_3_3_23_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0262242"},{"key":"e_1_3_3_24_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00632-20"},{"key":"e_1_3_3_25_2","doi-asserted-by":"publisher","DOI":"10.1128\/Spectrum.00610-21"},{"key":"e_1_3_3_26_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000740"},{"key":"e_1_3_3_27_2","doi-asserted-by":"publisher","DOI":"10.1093\/clinchem\/hvaa092"},{"key":"e_1_3_3_28_2","doi-asserted-by":"publisher","DOI":"10.1101\/gr.262865.120"},{"key":"e_1_3_3_29_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01405-18"},{"key":"e_1_3_3_30_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.5261"},{"key":"e_1_3_3_31_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01069-17"},{"key":"e_1_3_3_32_2","doi-asserted-by":"publisher","DOI":"10.1097\/01.CCM.0000217961.75225.E9"},{"key":"e_1_3_3_33_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-59957-6"},{"key":"e_1_3_3_34_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01822-19"},{"key":"e_1_3_3_35_2","volume-title":"nanoporetech\/bonito. Python","author":"Oxford Nanopore Technologies","year":"2021","unstructured":"Oxford Nanopore Technologies. 2021. nanoporetech\/bonito. Python. https:\/\/github.com\/nanoporetech\/bonito."},{"key":"e_1_3_3_36_2","volume-title":"nanoporetech\/medaka. Python","author":"Oxford Nanopore Technologies","year":"2021","unstructured":"Oxford Nanopore Technologies. 2021. nanoporetech\/medaka. Python. https:\/\/github.com\/nanoporetech\/medaka."},{"key":"e_1_3_3_37_2","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.11764"},{"key":"e_1_3_3_38_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-13-134"},{"key":"e_1_3_3_39_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp324"},{"key":"e_1_3_3_40_2","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/gix010"},{"key":"e_1_3_3_41_2","volume-title":"NanoSim-H.","author":"B\u0159inda K","year":"2022","unstructured":"B\u0159inda K. 2022. NanoSim-H. Python. https:\/\/github.com\/karel-brinda\/NanoSim-H."},{"key":"e_1_3_3_42_2","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giab008"},{"key":"e_1_3_3_43_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty149"},{"key":"e_1_3_3_44_2","volume-title":"Snippy.","author":"Seemann T","year":"2022","unstructured":"Seemann T. 2022. Snippy. Perl. https:\/\/github.com\/tseemann\/snippy."},{"key":"e_1_3_3_45_2","unstructured":"Biostars. 2012. Programming challenge: - synthetic whole genome Vcf. https:\/\/www.biostars.org\/p\/52398\/. Retrieved 29 June 2022."},{"key":"e_1_3_3_46_2","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000685"}],"container-title":["Microbiology Spectrum"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.02728-22","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/spectrum.02728-22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,14]],"date-time":"2023-02-14T10:00:13Z","timestamp":1676368813000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/spectrum.02728-22"}},"subtitle":[],"editor":[{"given":"Cheryl P.","family":"Andam","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2023,2,14]]},"references-count":45,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2023,2,14]]}},"alternative-id":["10.1128\/spectrum.02728-22"],"URL":"https:\/\/doi.org\/10.1128\/spectrum.02728-22","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2022.07.31.502206","asserted-by":"object"}]},"ISSN":["2165-0497"],"issn-type":[{"value":"2165-0497","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,2,14]]},"assertion":[{"value":"2022-08-03","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-01-03","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2023-01-23","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e02728-22"}}