{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T07:21:42Z","timestamp":1761895302535},"reference-count":8,"publisher":"American Society for Microbiology","issue":"18","license":[{"start":{"date-parts":[[2011,9,15]],"date-time":"2011-09-15T00:00:00Z","timestamp":1316044800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/journals.asm.org\/non-commercial-tdm-license"}],"content-domain":{"domain":["journals.asm.org"],"crossmark-restriction":true},"short-container-title":["J Bacteriol"],"published-print":{"date-parts":[[2011,9,15]]},"abstract":"ABSTRACT<\/jats:title>\n \n Alicycliphilus denitrificans<\/jats:named-content>\n strain BC and\n A. denitrificans<\/jats:named-content>\n strain K601\n T<\/jats:sup>\n degrade cyclic hydrocarbons. These strains have been isolated from a mixture of wastewater treatment plant material and benzene-polluted soil and from a wastewater treatment plant, respectively, suggesting their role in bioremediation of soil and water. Although the strains are phylogenetically closely related, there are some clear physiological differences. The hydrocarbon cyclohexanol, for example, can be degraded by strain K601\n T<\/jats:sup>\n but not by strain BC. Furthermore, both strains can use nitrate and oxygen as an electron acceptor, but only strain BC can use chlorate as electron acceptor. To better understand the nitrate and chlorate reduction mechanisms coupled to the oxidation of cyclic compounds, the genomes of\n A. denitrificans<\/jats:named-content>\n strains BC and K601\n T<\/jats:sup>\n were sequenced. Here, we report the complete genome sequences of\n A. denitrificans<\/jats:named-content>\n strains BC and K601\n T<\/jats:sup>\n .\n <\/jats:p>","DOI":"10.1128\/jb.00365-11","type":"journal-article","created":{"date-parts":[[2011,7,9]],"date-time":"2011-07-09T03:11:29Z","timestamp":1310181089000},"page":"5028-5029","update-policy":"http:\/\/dx.doi.org\/10.1128\/asmj-crossmark-policy-page","source":"Crossref","is-referenced-by-count":33,"title":["Genome Sequences of Alicycliphilus denitrificans Strains BC and K601\n T<\/sup>"],"prefix":"10.1128","volume":"193","author":[{"given":"Margreet J.","family":"Oosterkamp","sequence":"first","affiliation":[{"name":"Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands"}]},{"given":"Teun","family":"Veuskens","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands"}]},{"given":"Caroline M.","family":"Plugge","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands"}]},{"given":"Alette A. M.","family":"Langenhoff","sequence":"additional","affiliation":[{"name":"Deltares, Princetonlaan 6, 3584 CB, Utrecht, The Netherlands"}]},{"given":"Jan","family":"Gerritse","sequence":"additional","affiliation":[{"name":"Deltares, Princetonlaan 6, 3584 CB, Utrecht, The Netherlands"}]},{"given":"Willem J. H.","family":"van Berkel","sequence":"additional","affiliation":[{"name":"Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands"}]},{"given":"Dietmar H.","family":"Pieper","sequence":"additional","affiliation":[{"name":"Microbial Interactions and Processes Research Group, HZI\u2014Helmholz Centre for Infection Research, Inhoffenstrasse 7, D-38124 Braunschweig, Germany"}]},{"given":"Howard","family":"Junca","sequence":"additional","affiliation":[{"name":"Research Group Microbial Ecology: Metabolism, Genomics and Evolution of Communities of Environmental Microorganisms, CorpoGen, Carrera 5, 66A-34, Bogot\u00e1, Colombia"}]},{"given":"Lynne A.","family":"Goodwin","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"Hajnalka E.","family":"Daligault","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"David C.","family":"Bruce","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"John C.","family":"Detter","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"Roxanne","family":"Tapia","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"Cliff S.","family":"Han","sequence":"additional","affiliation":[{"name":"Los Alamos National Laboratory, Bioscience Division B-6, Genome Science, Joint Genome Institute, Los Alamos, New Mexico 87545"}]},{"given":"Miriam L.","family":"Land","sequence":"additional","affiliation":[{"name":"BioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831"}]},{"given":"Loren J.","family":"Hauser","sequence":"additional","affiliation":[{"name":"BioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831"}]},{"given":"Hauke","family":"Smidt","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands"}]},{"given":"Alfons J. M.","family":"Stams","sequence":"additional","affiliation":[{"name":"Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands"}]}],"member":"235","reference":[{"key":"e_1_3_2_2_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.70.9.5651-5658.2004"},{"key":"e_1_3_2_3_2","doi-asserted-by":"publisher","DOI":"10.1517\/14622416.5.4.433"},{"key":"e_1_3_2_4_2","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-119"},{"key":"e_1_3_2_5_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00253-010-2996-2"},{"key":"e_1_3_2_6_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature03959"},{"key":"e_1_3_2_7_2","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1099\/ijs.0.02276-0","article-title":"Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing, \u03b2-proteobacterium","volume":"53","author":"Mechichi T.","year":"2003","unstructured":"MechichiT. StackebrandtE. FuchsG.. 2003. Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing, \u03b2-proteobacterium. Int. J. Syst. Evol. Microbiol. 53:147\u2013152.","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"e_1_3_2_8_2","doi-asserted-by":"publisher","DOI":"10.1007\/s002030050390"},{"key":"e_1_3_2_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00835-08"}],"container-title":["Journal of Bacteriology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JB.00365-11","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/journals.asm.org\/doi\/pdf\/10.1128\/JB.00365-11","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,7,29]],"date-time":"2021-07-29T17:20:08Z","timestamp":1627579208000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.asm.org\/doi\/10.1128\/JB.00365-11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,9,15]]},"references-count":8,"journal-issue":{"issue":"18","published-print":{"date-parts":[[2011,9,15]]}},"alternative-id":["10.1128\/JB.00365-11"],"URL":"https:\/\/doi.org\/10.1128\/jb.00365-11","relation":{},"ISSN":["0021-9193","1098-5530"],"issn-type":[{"value":"0021-9193","type":"print"},{"value":"1098-5530","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,9,15]]},"assertion":[{"value":"2011-03-16","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2011-06-10","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2011-08-25","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}