{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,13]],"date-time":"2025-09-13T16:23:54Z","timestamp":1757780634805},"reference-count":57,"publisher":"Oxford University Press (OUP)","issue":"e1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,6]]},"DOI":"10.1136\/amiajnl-2011-000631","type":"journal-article","created":{"date-parts":[[2012,4,12]],"date-time":"2012-04-12T00:49:05Z","timestamp":1334191745000},"page":"e177-e186","source":"Crossref","is-referenced-by-count":7,"title":["Using ontology-based annotation to profile disease research"],"prefix":"10.1093","volume":"19","author":[{"given":"Yi","family":"Liu","sequence":"first","affiliation":[]},{"given":"Adrien","family":"Coulet","sequence":"additional","affiliation":[]},{"given":"Paea","family":"LePendu","sequence":"additional","affiliation":[]},{"given":"Nigam H","family":"Shah","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2012,4,11]]},"reference":[{"key":"key\n\t\t\t\t20170522085514_b1","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1038\/465682a","article-title":"Science economics: what science is really worth","volume":"465","author":"Macilwain","year":"2010","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170522085514_b2","doi-asserted-by":"crossref","first-page":"678","DOI":"10.1126\/science.1201865","article-title":"Research funding. Measuring the results of science investments","volume":"331","author":"Lane","year":"2011","journal-title":"Science"},{"key":"key\n\t\t\t\t20170522085514_b3","doi-asserted-by":"crossref","first-page":"488","DOI":"10.1038\/464488a","article-title":"Let's make science metrics more scientific","volume":"464","author":"Lane","year":"2010","journal-title":"Nature"},{"key":"key\n\t\t\t\t20170522085514_b4","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1111\/j.1435-5957.2010.00292.x","article-title":"The spatial profile of university-business research partnerships","volume":"89","author":"D'Este","year":"2010","journal-title":"Paper Reg Sci"},{"key":"key\n\t\t\t\t20170522085514_b5","doi-asserted-by":"crossref","first-page":"891","DOI":"10.1038\/nrd1879","article-title":"Outlook: finding improved medicines: the role of academic\u2013industrial collaboration","volume":"4","author":"Chin-Dusting","year":"2005","journal-title":"Nat Rev Drug Discov"},{"key":"key\n\t\t\t\t20170522085514_b6","doi-asserted-by":"crossref","first-page":"865","DOI":"10.1038\/nrd2973","article-title":"Can literature analysis identify innovation drivers in drug discovery?","volume":"8","author":"Agarwal","year":"2009","journal-title":"Nat Rev Drug Discov"},{"key":"key\n\t\t\t\t20170522085514_b7","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1001\/jama.295.1.90","article-title":"The history and meaning of the journal impact factor","volume":"295","author":"Garfield","year":"2006","journal-title":"JAMA"},{"key":"key\n\t\t\t\t20170522085514_b8","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1002\/asi.20953","article-title":"A Google Scholar h-index for journals: an alternative metric to measure journal impact in economics and business","volume":"60","author":"Harzing","year":"2009","journal-title":"J Am Soc Inf Sci Technol"},{"key":"key\n\t\t\t\t20170522085514_b9","first-page":"193","article-title":"The h-index: advantages, limitations and its relation with other bibliometric indicators at the micro level","volume":"1","author":"Costas","year":"2007","journal-title":"The Hirsch Index"},{"key":"key\n\t\t\t\t20170522085514_b10","first-page":"8","volume-title":"An Improvement of the H-index: The G-index","author":"Egghe","year":"2006"},{"key":"key\n\t\t\t\t20170522085514_b11","doi-asserted-by":"crossref","first-page":"1333","DOI":"10.1001\/jama.294.11.1333","article-title":"Financial anatomy of biomedical research","volume":"294","author":"Moses","year":"2005","journal-title":"JAMA"},{"issue":"Suppl 1","key":"key\n\t\t\t\t20170522085514_b12","doi-asserted-by":"crossref","first-page":"S3","DOI":"10.1097\/QAI.0b013e3181bbc807","article-title":"Global HIV\/AIDS funding and health systems: searching for the win-win","volume":"52","author":"Levine","year":"2009","journal-title":"J Acquir Immune Defic Syndr"},{"key":"key\n\t\t\t\t20170522085514_b13","doi-asserted-by":"crossref","first-page":"518","DOI":"10.1126\/science.321.5888.518","article-title":"HIV\/AIDS. Bang for the buck","volume":"321","author":"Cohen","year":"2008","journal-title":"Science"},{"key":"key\n\t\t\t\t20170522085514_b14","doi-asserted-by":"crossref","first-page":"2691","DOI":"10.1111\/j.1460-9568.2006.05116.x","article-title":"Resource allocation to brain research in Europe (RABRE)","volume":"24","author":"Sobocki","year":"2006","journal-title":"Eur J Neurosci"},{"key":"key\n\t\t\t\t20170522085514_b15","doi-asserted-by":"crossref","first-page":"652","DOI":"10.1002\/ana.21047","article-title":"Financial anatomy of neuroscience research","volume":"60","author":"Dorsey","year":"2006","journal-title":"Ann Neurol"},{"key":"key\n\t\t\t\t20170522085514_b16","unstructured":"Office of Portfolio Analysis. http:\/\/opasi.nih.gov\/portfolio_analysis\/index.aspx (accessed 18 Dec 2011)."},{"key":"key\n\t\t\t\t20170522085514_b17","unstructured":"NIH. National Institutes of Health RePORT. http:\/\/report.nih.gov\/index.aspx (accessed 30 Apr 2011)."},{"key":"key\n\t\t\t\t20170522085514_b18","first-page":"505","article-title":"The NIH Visual Browser: an interactive visualization of biomedical research","volume-title":"International Conference on Information Visualisation","author":"Bruce William","year":"2009"},{"key":"key\n\t\t\t\t20170522085514_b19","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1089\/omi.2006.10.185","article-title":"National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge","volume":"10","author":"Rubin","year":"2006","journal-title":"OMICS"},{"issue":"Suppl 1","key":"key\n\t\t\t\t20170522085514_b20","doi-asserted-by":"crossref","first-page":"S6","DOI":"10.1186\/1471-2164-10-S1-S6","article-title":"Annotating the human genome with disease ontology","volume":"10","author":"Osborne","year":"2009","journal-title":"BMC Genomics"},{"key":"key\n\t\t\t\t20170522085514_b21","first-page":"56","volume-title":"The Open Biomedical Annotator. AMIA Summit on Translational Bioinformatics","author":"Jonquet","year":"2009"},{"key":"key\n\t\t\t\t20170522085514_b22","unstructured":"Research Crossroads. Research Crossroads Frequently Asked Questions. http:\/\/www.researchcrossroads.org\/index.php?option=com_content&view=article&id=227&Itemid=97 (accessed 20 Jun 2011)."},{"key":"key\n\t\t\t\t20170522085514_b23","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1007\/s11192-009-0414-2","article-title":"The Scholarly Database and its utility for scientometrics research","volume":"79","author":"LaRowe","year":"2009","journal-title":"Scientometrics"},{"issue":"Suppl 2","key":"key\n\t\t\t\t20170522085514_b24","doi-asserted-by":"crossref","first-page":"W170","DOI":"10.1093\/nar\/gkp440","article-title":"BioPortal: ontologies and integrated data resources at the click of a mouse","volume":"37","author":"Noy","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"key\n\t\t\t\t20170522085514_b25","article-title":"NCBO resource index: ontology-based search and mining of biomedical resources","volume-title":"Semantic Web Challenge, 9th International Semantic Web Conference","author":"Jonquet"},{"key":"key\n\t\t\t\t20170522085514_b26","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1093\/bib\/bbm059","article-title":"Biomedical ontologies: a functional perspective","volume":"9","author":"Rubin","year":"2008","journal-title":"Brief Bioinform"},{"issue":"Suppl 1","key":"key\n\t\t\t\t20170522085514_b27","doi-asserted-by":"crossref","first-page":"S31","DOI":"10.1016\/j.jbi.2011.04.007","article-title":"Enabling enrichment analysis with the human disease ontology","volume":"44","author":"LePendu","year":"2011","journal-title":"J Biomed Inform"},{"key":"key\n\t\t\t\t20170522085514_b28","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1186\/1471-2105-8-296","article-title":"Annotation and query of tissue microarray data using the NCI Thesaurus","volume":"8","author":"Shah","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170522085514_b29","unstructured":"Disease Ontology Wiki: Main Page: License. http:\/\/do-wiki.nubic.northwestern.edu\/index.php\/Main_Page#License (accessed 10 Sep 2011)."},{"key":"key\n\t\t\t\t20170522085514_b30","first-page":"198","article-title":"Creating mappings for ontologies in biomedicine: simple methods work","volume":"2009","author":"Ghazvinian","year":"2009","journal-title":"AMIA Annu Symp Proc"},{"key":"key\n\t\t\t\t20170522085514_b31","unstructured":"Disease Ontology Wiki: Main Page: Mission. http:\/\/do-wiki.nubic.northwestern.edu\/index.php\/Main_Page#License (accessed 10 Sep 2011)."},{"key":"key\n\t\t\t\t20170522085514_b32","first-page":"907","article-title":"A comprehensive analysis of five million UMLS Metathesaurus terms using eighteen million MEDLINE citations","volume":"2010","author":"Xu","year":"2010","journal-title":"AMIA Annu Symp Proc"},{"key":"key\n\t\t\t\t20170522085514_b33","volume-title":"UMLS Term Occurrences in Clinical Notes: A Large-scale Corpus Analysis. AMIA Summit on Clinical Research Informatics (Accepted)","author":"Wu","year":"2012"},{"key":"key\n\t\t\t\t20170522085514_b34","volume-title":"An Efficient Solution for Mapping Free Text to Ontology Terms. AMIA Summit on Translational Bioinformatics","author":"Dai","year":"2008"},{"issue":"Suppl 9","key":"key\n\t\t\t\t20170522085514_b35","doi-asserted-by":"crossref","first-page":"S14","DOI":"10.1186\/1471-2105-10-S9-S14","article-title":"Comparison of concept recognizers for building the Open Biomedical Annotator","volume":"10","author":"Shah","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170522085514_b36","first-page":"28","article-title":"Deaths: final data for 2007","volume":"58","author":"Xu","year":"2010","journal-title":"Natl Vital Stat Rep"},{"key":"key\n\t\t\t\t20170522085514_b37","volume-title":"Global Health Risks: Mortality and Burden of Disease Attributable to Selected Major Risks","author":"Mathers","year":"2009"},{"key":"key\n\t\t\t\t20170522085514_b38","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1111\/1467-9868.00293","article-title":"Estimating the number of clusters in a data set via the gap statistic","volume":"63","author":"Tibshirani","year":"2001","journal-title":"J Roy Stat Soc"},{"key":"key\n\t\t\t\t20170522085514_b39","article-title":"Report on Substance Use, Abuse and Addiction Research at NIH","volume-title":"Published by the National Institutes of Health Scientific Management Review Board","year":"2010"},{"key":"key\n\t\t\t\t20170522085514_b40","doi-asserted-by":"crossref","first-page":"e6425","DOI":"10.1371\/journal.pone.0006425","article-title":"The impact of national institutes of health funding on U.S. Cardiovascular Disease Research","volume":"4","author":"Lyubarova","year":"2009","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170522085514_b41","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1136\/gut.49.2.295","article-title":"International gastroenterology research: subject areas, impact, and funding","volume":"49","author":"Lewison","year":"2001","journal-title":"Gut"},{"key":"key\n\t\t\t\t20170522085514_b42","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s11192-010-0191-y","article-title":"Characteristics and impact of grant-funded research: a case study of the library and information science field","volume":"84","author":"Zhao","year":"2010","journal-title":"Scientometrics"},{"key":"key\n\t\t\t\t20170522085514_b43","volume-title":"Quantitative Methods of Research Evaluation Used by the U.S. Federal Government. Second Theory-Oriented Research Group, National Institute of Science and Technology Policy (NISTEP)","author":"Hicks","year":"2002"},{"key":"key\n\t\t\t\t20170522085514_b44","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1002\/asi.10230","article-title":"Indicator-assisted evaluation and funding of research: visualizing the influence of grants on the number and citation counts of research papers","volume":"54","author":"Boyack","year":"2003","journal-title":"J Am Soc Inform Sci Tech"},{"issue":"Suppl 1","key":"key\n\t\t\t\t20170522085514_b45","doi-asserted-by":"crossref","first-page":"5183","DOI":"10.1073\/pnas.0307852100","article-title":"Mapping knowledge domains","volume":"101","author":"Shiffrin","year":"2004","journal-title":"Proc Natl Acad Sci U S A"},{"key":"key\n\t\t\t\t20170522085514_b46","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1136\/amiajnl-2011-000213","article-title":"Metrics associated with NIH funding: a high-level view","volume":"18","author":"Boyack","year":"2011","journal-title":"J Am Med Inform Assoc"},{"key":"key\n\t\t\t\t20170522085514_b47","doi-asserted-by":"crossref","first-page":"e18029","DOI":"10.1371\/journal.pone.0018029","article-title":"Clustering more than two million biomedical publications: comparing the Accuracies of nine text-based similarity approaches","volume":"6","author":"Boyack","year":"2011","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t20170522085514_b48","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1002\/cplx.20078","article-title":"Studying the emerging global brain: analyzing and visualizing the impact of co-authorship teams","volume":"10","author":"B\u00f6rner","year":"2005","journal-title":"Complexity"},{"key":"key\n\t\t\t\t20170522085514_b49","first-page":"459","article-title":"Analysis of Japanese information systems co-authorship data","volume-title":"International Conference on Information Visualisation","author":"Gavin","year":"2007"},{"key":"key\n\t\t\t\t20170522085514_b50","first-page":"421","article-title":"113 Years of physical review: using flow maps to show temporal and topical citation patterns","volume-title":"International Conference on Information Visualisation","author":"Bruce","year":"2008"},{"key":"key\n\t\t\t\t20170522085514_b51","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1111\/j.1468-1331.2009.02768.x","article-title":"Publishing affects funding in neurology","volume":"17","author":"Gilhus","year":"2010","journal-title":"Eur J Neurol"},{"key":"key\n\t\t\t\t20170522085514_b52","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1016\/j.jbi.2010.07.006","article-title":"Natural language processing methods and systems for biomedical ontology learning","volume":"44","author":"Liu","year":"2011","journal-title":"J Biomed Inform"},{"key":"key\n\t\t\t\t20170522085514_b53","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1186\/1471-2105-12-420","article-title":"BioN0T: a searchable database of biomedical negated sentences","volume":"12","author":"Agarwal","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170522085514_b54","doi-asserted-by":"crossref","first-page":"43","DOI":"10.2337\/diacare.25.1.43","article-title":"Cause-specific mortality in a population with diabetes: South Tees Diabetes Mortality Study","volume":"25","author":"Roper","year":"2002","journal-title":"Diabetes Care"},{"key":"key\n\t\t\t\t20170522085514_b55","doi-asserted-by":"crossref","first-page":"336","DOI":"10.1007\/BF00251820","article-title":"Diabetes mortality: new light on an underestimated public health problem","volume":"24","author":"Fuller","year":"1983","journal-title":"Diabetologia"},{"issue":"Suppl 2","key":"key\n\t\t\t\t20170522085514_b56","doi-asserted-by":"crossref","first-page":"S1","DOI":"10.1186\/1471-2105-10-S2-S1","article-title":"Ontology-driven indexing of public datasets for translational bioinformatics","volume":"10","author":"Shah","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20170522085514_b57","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1016\/j.websem.2011.06.005","article-title":"NCBO Resource Index: Ontology-based search and mining of biomedical resources","volume":"9","author":"Jonquet","year":"2011","journal-title":"Web Semant Sci Serv Agents World Wide Web"}],"container-title":["Journal of the American Medical Informatics Association"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/jamia\/article-pdf\/19\/e1\/e177\/17374735\/19-e1-e177.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,8,23]],"date-time":"2017-08-23T06:00:46Z","timestamp":1503468046000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/jamia\/article-lookup\/doi\/10.1136\/amiajnl-2011-000631"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,4,11]]},"references-count":57,"journal-issue":{"issue":"e1","published-online":{"date-parts":[[2012,4,11]]},"published-print":{"date-parts":[[2012,6]]}},"URL":"https:\/\/doi.org\/10.1136\/amiajnl-2011-000631","relation":{},"ISSN":["1527-974X","1067-5027"],"issn-type":[{"value":"1527-974X","type":"electronic"},{"value":"1067-5027","type":"print"}],"subject":[],"published":{"date-parts":[[2012,4,11]]}}}