{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,31]],"date-time":"2025-12-31T07:55:53Z","timestamp":1767167753343,"version":"build-2238731810"},"reference-count":36,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":["bmj.com"],"crossmark-restriction":true},"short-container-title":["J Am Med Inform Assoc"],"published-print":{"date-parts":[[2013,9]]},"DOI":"10.1136\/amiajnl-2012-001350","type":"journal-article","created":{"date-parts":[[2012,10,31]],"date-time":"2012-10-31T10:24:14Z","timestamp":1351679054000},"page":"882-886","update-policy":"https:\/\/doi.org\/10.1136\/crossmarkpolicy","source":"Crossref","is-referenced-by-count":24,"title":["Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification"],"prefix":"10.1093","volume":"20","author":[{"given":"Vijay N","family":"Garla","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cynthia","family":"Brandt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,9,1]]},"reference":[{"key":"2015062501525229000_20.5.882.1","unstructured":"Friedman C . A broad-coverage natural language processing system. Proceedings of AMIA Symposium; 2000;270\u20134."},{"key":"2015062501525229000_20.5.882.2","doi-asserted-by":"publisher","DOI":"10.1002\/asi.20134"},{"key":"2015062501525229000_20.5.882.3","unstructured":"Aronson AR Bodenreider O Chang HF . The NLM indexing initiative. Proceedings of AMIA Symposium; 2000;17\u201321."},{"key":"2015062501525229000_20.5.882.4","doi-asserted-by":"publisher","DOI":"10.1002\/acr.20184"},{"key":"2015062501525229000_20.5.882.5","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2009.08.007"},{"key":"2015062501525229000_20.5.882.6","unstructured":"National Library of Medicine. UMLS\u00ae Reference Manual\u2014NCBI Bookshelf. 2009. http:\/\/www.ncbi.nlm.nih.gov\/books\/NBK9676\/ (accessed 30 Mar 2011)."},{"key":"2015062501525229000_20.5.882.7","unstructured":"McInnes BT Pedersen T Liu Y . Knowledge-based method for determining the meaning of ambiguous biomedical terms using information content measures of similarity. Proceedings of AMIA Symposium; 2011;895\u2013904."},{"key":"2015062501525229000_20.5.882.8","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2008.02.003"},{"key":"2015062501525229000_20.5.882.9","doi-asserted-by":"publisher","DOI":"10.1197\/jamia.M1533"},{"key":"2015062501525229000_20.5.882.10","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-355"},{"key":"2015062501525229000_20.5.882.11","doi-asserted-by":"publisher","DOI":"10.1002\/asi.20257"},{"key":"2015062501525229000_20.5.882.12","doi-asserted-by":"crossref","unstructured":"Lesk M . Automatic sense disambiguation using machine readable dictionaries: how to tell a pine cone from an ice cream cone. Proceedings of the 5th Annual International Conference on Systems Documentation; New York, NY, USA, 1986:24\u20136.","DOI":"10.1145\/318723.318728"},{"key":"2015062501525229000_20.5.882.13","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq555"},{"key":"2015062501525229000_20.5.882.14","doi-asserted-by":"crossref","unstructured":"Patwardhan S Banerjee S Pedersen T . Using measures of semantic relatedness for word sense disambiguation. In: Gelbukh A , ed. Computational linguistics and intelligent text processing. Berlin\/Heidelberg: Springer, 2003:241\u201357.","DOI":"10.1007\/3-540-36456-0_24"},{"key":"2015062501525229000_20.5.882.15","doi-asserted-by":"crossref","unstructured":"Agirre E Alfonseca E Hall K . A study on similarity and relatedness using distributional and WordNet-based approaches. Proceedings of Human Language Technologies: the 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics; Boulder, Colorado, 2009: 19\u201327.","DOI":"10.3115\/1620754.1620758"},{"key":"2015062501525229000_20.5.882.16","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2006.06.004"},{"key":"2015062501525229000_20.5.882.17","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2011.03.013"},{"key":"2015062501525229000_20.5.882.18","doi-asserted-by":"publisher","DOI":"10.1136\/amiajnl-2011-000150"},{"key":"2015062501525229000_20.5.882.19","doi-asserted-by":"publisher","DOI":"10.1136\/jamia.2009.001412"},{"key":"2015062501525229000_20.5.882.20","unstructured":"Suominen H Ginter F Pyysalo S . Machine learning to automate the assignment of diagnosis codes to free-text radiology reports: a method description. In: Hauskrecht M Schuurmans D Szepesvari C , eds. Proceedings of the ICML\/UAI\/COLT 2008 Workshop on Machine Learning for Healthcare Applications. Helsinki, Finland, 2008. http:\/\/www.tucs.fi:8080\/publications\/attachment.php?fname=inpSuGiPyAiPaSaSa08a.pdf."},{"key":"2015062501525229000_20.5.882.21","doi-asserted-by":"publisher","DOI":"10.1016\/j.patcog.2008.10.024"},{"key":"2015062501525229000_20.5.882.22","doi-asserted-by":"publisher","DOI":"10.1016\/j.jbi.2012.04.010"},{"key":"2015062501525229000_20.5.882.23","unstructured":"Resnik P . Using information content to evaluate semantic similarity in a taxonomy. Proceedings of the 14th International Joint Conference on Artificial Intelligence; 1995:448\u201353."},{"key":"2015062501525229000_20.5.882.24","unstructured":"Seco N Veale T Hayes J . An intrinsic information content metric for semantic similarity in WordNet. ECAI\u20192004, the 16th European Conference on Artificial Intelligence; 2004."},{"key":"2015062501525229000_20.5.882.25","doi-asserted-by":"crossref","unstructured":"Wu Z Palmer M . Verbs, semantics and lexical selection. Proceedings of the 32nd Annual Meeting on Association for Computational Linguistics; Las Cruces, New Mexico, USA, 1994:133\u20138.","DOI":"10.3115\/981732.981751"},{"key":"2015062501525229000_20.5.882.26","doi-asserted-by":"crossref","unstructured":"Leacock C Chodorow M . Combining local context with WordNet similarity for word sense identification. Wordnet: a Lexical Reference System and its Application; 1998.","DOI":"10.7551\/mitpress\/7287.003.0018"},{"key":"2015062501525229000_20.5.882.27","unstructured":"Lin D . An information-theoretic definition of similarity. Proceedings of the 15th International Conference on Machine Learning; Morgan Kaufmann Publishers, 1998:296\u2013304."},{"key":"2015062501525229000_20.5.882.28","unstructured":"Jiang JJ Conrath DW . Semantic similarity based on corpus statistics and lexical taxonomy. Proceedings of the International Conference on Research in Computational Linguistics; 1997:19\u201333."},{"key":"2015062501525229000_20.5.882.29","doi-asserted-by":"publisher","DOI":"10.1136\/jamia.2009.002733"},{"key":"2015062501525229000_20.5.882.30","doi-asserted-by":"publisher","DOI":"10.1136\/jamia.2009.001560"},{"key":"2015062501525229000_20.5.882.31","unstructured":"Weeber M Mork JG Aronson AR . Developing a test collection for biomedical word sense disambiguation. Proceedings of AMIA Symposium; 2001:746\u201350."},{"key":"2015062501525229000_20.5.882.32","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-223"},{"key":"2015062501525229000_20.5.882.33","doi-asserted-by":"crossref","unstructured":"McInnes BT . An unsupervised vector approach to biomedical term disambiguation: integrating UMLS and Medline. Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics on Human Language Technologies: Student Research Workshop; Stroudsburg, Pennsylvania, USA: Association for Computational Linguistics, 2008:49\u201354.","DOI":"10.3115\/1564154.1564165"},{"key":"2015062501525229000_20.5.882.34","unstructured":"U.S. National Library of Medicine. MEDLINE Fact Sheet. http:\/\/www.nlm.nih.gov\/pubs\/factsheets\/medline.html (accessed 9 Mar 2012)."},{"key":"2015062501525229000_20.5.882.35","doi-asserted-by":"crossref","unstructured":"Pestian JP Brew C Matykiewicz P . A shared task involving multi-label classification of clinical free text. Proceedings of ACL BioNLP. Prague, 2007:97\u2013104.","DOI":"10.3115\/1572392.1572411"},{"key":"2015062501525229000_20.5.882.36","unstructured":"Rogers W . Using the MetaMap UIMA Annotator. http:\/\/metamap.nlm.nih.gov\/README_uima.html (accessed 15 Jul 2012)."}],"updated-by":[{"DOI":"10.1136\/amiajnl-2012-001350corr1","type":"correction","label":"Correction","source":"publisher","updated":{"date-parts":[[2014,5,1]],"date-time":"2014-05-01T00:00:00Z","timestamp":1398902400000}}],"container-title":["Journal of the American Medical Informatics Association"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/jamia\/article-pdf\/20\/5\/882\/17375039\/20-5-882.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,19]],"date-time":"2025-04-19T20:53:46Z","timestamp":1745096026000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/jamia\/article-lookup\/doi\/10.1136\/amiajnl-2012-001350"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,9]]},"references-count":36,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2013,9,1]]},"published-print":{"date-parts":[[2013,9]]}},"alternative-id":["10.1136\/amiajnl-2012-001350"],"URL":"https:\/\/doi.org\/10.1136\/amiajnl-2012-001350","relation":{},"ISSN":["1067-5027","1527-974X"],"issn-type":[{"value":"1067-5027","type":"print"},{"value":"1527-974X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,9]]}}}