{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T12:52:18Z","timestamp":1782391938373,"version":"3.54.5"},"reference-count":72,"publisher":"Canadian Science Publishing","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/deed.en_GB"}],"funder":[{"name":"National Institute of Science and Technology (INCT) in Ecology, Evolution, and Biodiversity Conservation"},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"crossref","award":["406597\/2023-5"],"award-info":[{"award-number":["406597\/2023-5"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"crossref","award":["441114\/2023-7"],"award-info":[{"award-number":["441114\/2023-7"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"crossref","award":["465610\/2014-5\/"],"award-info":[{"award-number":["465610\/2014-5\/"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100003593","name":"CNPq","doi-asserted-by":"crossref","award":["409197\/2024-6"],"award-info":[{"award-number":["409197\/2024-6"]}],"id":[{"id":"10.13039\/501100003593","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100005285","name":"FAPEG","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100005285","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["cdnsciencepub.com"],"crossmark-restriction":false},"short-container-title":["Genome"],"published-print":{"date-parts":[[2026,1,1]]},"abstract":"<jats:p>\n                    The complete mitochondrial genome of Caryocar brasiliense (Caryocaraceae), an ecologically and economically important species native to the Brazilian savannas, was assembled and annotated. Using a hybrid assembly approach combining Oxford Nanopore and Illumina sequencing data, we assembled a 533\u2009641\u00a0bp bipartite mitogenome organized into two circular chromosomes. A high density of dispersed repeats and simple sequence repeats was detected, along with extensive DNA transfers from the chloroplast and nuclear genomes (MTPTs and NUMTs). The variation of mitogenome size is positively correlated with the number of dispersed repeats ( R\n                    <jats:sup>2<\/jats:sup>\n                    = 0.88). Genome annotation revealed 74 protein-coding genes, including sequences derived from both mitochondrial and chloroplast origins, as well as 376 predicted RNA editing sites, particularly concentrated in energy metabolism genes such as ccm and nad gene family. Comparative analysis across 10 Malpighiales species identified conserved core mitochondrial genes and revealed topological differences between mitochondrial and plastid phylogenies. These findings offer new insights into the structural and evolutionary dynamics of angiosperm mitochondrial genomes and provide a foundational resource for future genetic, evolutionary, and conservation studies in Caryocar brasiliense and related taxa.\n                  <\/jats:p>","DOI":"10.1139\/gen-2025-0097","type":"journal-article","created":{"date-parts":[[2026,5,14]],"date-time":"2026-05-14T21:33:48Z","timestamp":1778794428000},"page":"1-14","update-policy":"https:\/\/doi.org\/10.1139\/csp-crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["The mitochondrial genome of pequi tree (\n                    <i>Caryocar brasiliense<\/i>\n                    Cambess.): genome structure, gene transfers, and evolutionary insights within Malpighiales"],"prefix":"10.1139","volume":"69","author":[{"given":"Larissa R.","family":"Carvalho","sequence":"first","affiliation":[{"name":"Laborat\u00f3rio de Bioinform\u00e1tica e Biodiversidade, Instituto Acad\u00eamico de Ci\u00eancias da Sa\u00fade e Biol\u00f3gicas (IACSB), Universidade Estadual de Goi\u00e1s (UEG) \u2013 Campus Oeste \u2013 UnU de Ipor\u00e1","place":["Ipor\u00e1, Brasil"]},{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leonardo C.J.","family":"Corval\u00e1n","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Bioinform\u00e1tica e Biodiversidade, Instituto Acad\u00eamico de Ci\u00eancias da Sa\u00fade e Biol\u00f3gicas (IACSB), Universidade Estadual de Goi\u00e1s (UEG) \u2013 Campus Oeste \u2013 UnU de Ipor\u00e1","place":["Ipor\u00e1, Brasil"]},{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Renata O.","family":"Dias","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ramilla S.","family":"Braga-Ferreira","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cintia P.","family":"Targueta","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jos\u00e9 Alexandre F.","family":"Diniz-Filho","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Ecologia Te\u00f3rica, S\u00edntese, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mariana P.C.","family":"Telles","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Gen\u00e9tica e Biodiversidade, Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Goi\u00e1s","place":["Goi\u00e1s, Brasil"]},{"name":"Escola de Ci\u00eancias M\u00e9dicas e da Vida, Pontif\u00edcia Universidade Cat\u00f3lica de Goi\u00e1s, Av. University","place":["Goi\u00e1s, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7770-7707","authenticated-orcid":false,"given":"Rhewter","family":"Nunes","sequence":"additional","affiliation":[{"name":"Laborat\u00f3rio de Bioinform\u00e1tica e Biodiversidade, Instituto Acad\u00eamico de Ci\u00eancias da Sa\u00fade e Biol\u00f3gicas (IACSB), Universidade Estadual de Goi\u00e1s (UEG) \u2013 Campus Oeste \u2013 UnU de Ipor\u00e1","place":["Ipor\u00e1, Brasil"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"155","reference":[{"key":"refg1\/ref1","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msq029"},{"key":"refg2\/ref2","volume-title":"MFannot, organelle genome annotation websever","author":"Beck N.","year":"2010"},{"key":"refg3\/ref3","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/27.2.573"},{"key":"refg4\/ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.ympev.2021.107136"},{"key":"refg5\/ref5","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0140680"},{"key":"refg6\/ref6","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-024-05568-6"},{"key":"refg7\/ref7","doi-asserted-by":"publisher","DOI":"10.1093\/oxfordjournals.molbev.a026334"},{"key":"refg8\/ref8","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2024.1520251"},{"key":"refg9\/ref9","doi-asserted-by":"publisher","DOI":"10.3390\/ijms21010328"},{"key":"refg10\/ref10","doi-asserted-by":"publisher","DOI":"10.1007\/978-81-322-2283-5_8"},{"key":"refg11\/ref11","first-page":"11","author":"Doyle J.J.","year":"1987","journal-title":"Phytochem. Bull."},{"key":"refg12\/ref12","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1832-y"},{"key":"refg13\/ref13","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0037164"},{"key":"refg14\/ref14","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-024-11184-3"},{"key":"refg15\/ref15","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkz238"},{"key":"refg16\/ref16","doi-asserted-by":"publisher","DOI":"10.1146\/annurev-arplant-043015-112232"},{"key":"refg17\/ref17","doi-asserted-by":"publisher","DOI":"10.1016\/j.biochi.2013.09.016"},{"key":"refg18\/ref18","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-025-11372-9"},{"key":"refg19\/ref19","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-023-01620-3"},{"key":"refg20\/ref20","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2022.1031769"},{"key":"refg21\/ref21","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-024-05319-7"},{"key":"refg22\/ref22","doi-asserted-by":"publisher","DOI":"10.1111\/jipb.13455"},{"key":"refg23\/ref23","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-025-97594-z"},{"key":"refg24\/ref24","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1534171"},{"key":"refg25\/ref25","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evv244"},{"key":"refg26\/ref26","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-024-05891-y"},{"key":"refg27\/ref27","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-021-01096-z"},{"key":"refg28\/ref28","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbx108"},{"key":"refg29\/ref29","doi-asserted-by":"publisher","DOI":"10.5808\/GI.2016.14.3.90"},{"key":"refg30\/ref30","doi-asserted-by":"publisher","DOI":"10.1186\/s12915-025-02115-z"},{"key":"refg31\/ref31","doi-asserted-by":"publisher","DOI":"10.1101\/564278"},{"key":"refg32\/ref32","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkh152"},{"key":"refg33\/ref33","doi-asserted-by":"publisher","DOI":"10.4137\/BBI.S11059"},{"key":"refg34\/ref34","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty191"},{"key":"refg35\/ref35","doi-asserted-by":"publisher","DOI":"10.1007\/s00425-021-03684-3"},{"key":"refg36\/ref36","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.5.955"},{"key":"refg37\/ref37","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-021-03416-5"},{"key":"refg38\/ref38","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-025-11474-4"},{"key":"refg39\/ref39","doi-asserted-by":"crossref","DOI":"10.1201\/9780429329203","volume-title":"Randomization, Bootstrap and Monte Carlo methods in biology","author":"Manly B.F.J.","year":"2020","edition":"2"},{"key":"refg40\/ref40","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005944"},{"key":"refg41\/ref41","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1587750"},{"key":"refg42\/ref42","doi-asserted-by":"publisher","DOI":"10.1016\/j.mito.2020.06.002"},{"key":"refg43\/ref43","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-7091-1130-7_9"},{"key":"refg44\/ref44","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evae184"},{"key":"refg45\/ref45","doi-asserted-by":"publisher","DOI":"10.18067\/jbfs.v7i2.281"},{"key":"refg46\/ref46","volume-title":"Organelle\u2013NCBI\u2013NLM","author":"NCBI","year":"2025"},{"key":"refg47\/ref47","doi-asserted-by":"publisher","DOI":"10.1016\/j.dib.2019.104543"},{"key":"refg48\/ref48","doi-asserted-by":"publisher","DOI":"10.1007\/s12229-020-09233-z"},{"key":"refg49\/ref49","doi-asserted-by":"publisher","DOI":"10.1590\/1678-4685-gmb-2019-0161"},{"key":"refg50\/ref50","doi-asserted-by":"publisher","DOI":"10.12032\/TMR20201027204"},{"key":"refg51\/ref51","doi-asserted-by":"publisher","unstructured":"Orme D., Freckleton R., Thomas G., Petzoldt T., Fritz S., Isaac N., Pearse W. 2023. Comparative analyses of phylogenetics and evolution in R [R package caper version 1.0.3]. CRAN: Contributed Packages [Preprint]. doi:10.32614\/CRAN.PACKAGE.CAPER.","DOI":"10.32614\/CRAN.PACKAGE.CAPER"},{"key":"refg52\/ref52","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2024.1520033"},{"key":"refg53\/ref53","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg412"},{"key":"refg54\/ref54","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-025-11230-8"},{"key":"refg55\/ref55","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2024.1411289"},{"key":"refg56\/ref56","doi-asserted-by":"publisher","DOI":"10.1016\/0025-5564(81)90043-2"},{"key":"refg57\/ref57","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1504491112"},{"key":"refg58\/ref58","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1001241"},{"key":"refg59\/ref59","doi-asserted-by":"publisher","DOI":"10.1093\/gbe\/evs006"},{"key":"refg60\/ref60","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx391"},{"key":"refg61\/ref61","unstructured":"Vieira R.F., Camillo J., Coradin L. 2016. Esp\u00e9cies nativas da flora brasileira de valor econ\u00f4mico atual ou potencial: plantas para o future\u2013Regi\u00e3o centro-oeste. Available from http:\/\/www.b4fn.org\/the-countries\/brazil [accessed January 2025]."},{"key":"refg62\/ref62","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0112963"},{"key":"refg63\/ref63","doi-asserted-by":"publisher","DOI":"10.1093\/molbev\/msm133"},{"key":"refg64\/ref64","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2024.1429545"},{"key":"refg65\/ref65","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-022-08983-x"},{"key":"refg66\/ref66","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005595"},{"key":"refg67\/ref67","doi-asserted-by":"publisher","unstructured":"Wong T, Ly-Trong N, Ren H, Ba\u00f1os H, Roger A.J., Susko E.  2025. IQ-TREE 3: phylogenomic inference software using complex evolutionary models. doi:10.32942\/X2P62N.","DOI":"10.32942\/X2P62N"},{"key":"refg68\/ref68","doi-asserted-by":"publisher","DOI":"10.1111\/jse.12655"},{"key":"refg69\/ref69","doi-asserted-by":"publisher","DOI":"10.3390\/ijms24043976"},{"key":"refg70\/ref70","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-022-03665-y"},{"key":"refg71\/ref71","doi-asserted-by":"publisher","DOI":"10.12688\/f1000research.21490.1"},{"key":"refg72\/ref72","doi-asserted-by":"publisher","DOI":"10.1007\/s00425-024-04386-2"}],"container-title":["Genome"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/cdnsciencepub.com\/doi\/full-xml\/10.1139\/gen-2025-0097","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/cdnsciencepub.com\/doi\/pdf\/10.1139\/gen-2025-0097","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T12:41:38Z","timestamp":1782391298000},"score":1,"resource":{"primary":{"URL":"https:\/\/cdnsciencepub.com\/doi\/10.1139\/gen-2025-0097"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1,1]]},"references-count":72,"alternative-id":["10.1139\/gen-2025-0097"],"URL":"https:\/\/doi.org\/10.1139\/gen-2025-0097","relation":{},"ISSN":["0831-2796","1480-3321"],"issn-type":[{"value":"0831-2796","type":"print"},{"value":"1480-3321","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1,1]]},"assertion":[{"value":"2026-06-29","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}