{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,22]],"date-time":"2025-10-22T17:45:39Z","timestamp":1761155139446},"reference-count":19,"publisher":"World Scientific Pub Co Pte Ltd","issue":"02","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Bioinform. Comput. Biol."],"published-print":{"date-parts":[[2008,4]]},"abstract":"<jats:p>Affymetrix GeneChip<jats:sup>\u00ae<\/jats:sup>oligonucleotide arrays are dedicated to analyzing gene expression differences across distinct experimental conditions. Data production for such arrays is an elaborate process with many potential sources of variability unrelated to biologically relevant gene expression variations. Therefore, rigorous data quality assessment is fundamental throughout the process for downstream biologically meaningful analyses. We have developed a program named AffyGCQC, which is the acronym for a bioinformatics tool designed to perform Affymetrix GeneChip Quality Control. This program implements a graphical representation of QC metrics recommended by Affymetrix for GeneChip oligonucleotide array technology. Most importantly, it performs extreme studentized deviate statistical tests for the set of arrays being compared in a given experiment, thus providing an objective measure for outlier detection. AffyGCQC has been designed as an easy-to-use Web-based interface (online supplementary information: ; contact: affygcqc@biologie.ens.fr).<\/jats:p>","DOI":"10.1142\/s0219720008003400","type":"journal-article","created":{"date-parts":[[2008,5,7]],"date-time":"2008-05-07T11:28:52Z","timestamp":1210159732000},"page":"317-334","source":"Crossref","is-referenced-by-count":5,"title":["AFFYGCQC: A WEB-BASED INTERFACE TO DETECT OUTLYING GENECHIPS WITH EXTREME STUDENTIZED DEVIATE TESTS"],"prefix":"10.1142","volume":"06","author":[{"given":"JOS\u00c9","family":"OSORIO Y FORT\u00c9A","sequence":"first","affiliation":[{"name":"Unit\u00e9 d'Immunophysiologie et Parasitisme Intracellulaire, D\u00e9partement de Parasitologie et Mycologie, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris, France"}]},{"given":"\u00c9RIC","family":"PRINA","sequence":"additional","affiliation":[{"name":"Unit\u00e9 d'Immunophysiologie et Parasitisme Intracellulaire, D\u00e9partement de Parasitologie et Mycologie, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris, France"}]},{"given":"THIERRY","family":"LANG","sequence":"additional","affiliation":[{"name":"Unit\u00e9 d'Immunophysiologie et Parasitisme Intracellulaire, D\u00e9partement de Parasitologie et Mycologie, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris, France"}]},{"given":"GENEVI\u00c8VE","family":"MILON","sequence":"additional","affiliation":[{"name":"Unit\u00e9 d'Immunophysiologie et Parasitisme Intracellulaire, D\u00e9partement de Parasitologie et Mycologie, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris, France"}]},{"given":"CLARISSE","family":"DAVORY","sequence":"additional","affiliation":[{"name":"Service Informatique, D\u00e9partement de Biologie de l'Ecole, Normale Sup\u00e9rieure de Paris, CNRS \u2014 INSERM \u2014 IFR36, 46 rue d'Ulm, 75230 Paris, France"}]},{"given":"JEAN-YVES","family":"COPP\u00c9E","sequence":"additional","affiliation":[{"name":"G\u00e9nopole, Plate-Forme 2 \u2014 Puces \u00e0 ADN, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris, France"}]},{"given":"B\u00c9ATRICE","family":"REGNAULT","sequence":"additional","affiliation":[{"name":"G\u00e9nopole, Plate-Forme 2 \u2014 Puces \u00e0 ADN, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris, France"}]}],"member":"219","published-online":{"date-parts":[[2011,11,21]]},"reference":[{"key":"rf1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-214"},{"key":"rf2","first-page":"143","volume":"16","author":"Finkelstein D. 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