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Instead their distributions are inferred in order to be adapted (in the Bayesian sense) to the training sequences provided. The results of our RNA secondary structure predictions show that HDP-SCFGs are more accurate than the MFE-based and other generative models.<\/jats:p>","DOI":"10.1142\/s0219720010004926","type":"journal-article","created":{"date-parts":[[2010,5,11]],"date-time":"2010-05-11T07:26:01Z","timestamp":1273562761000},"page":"727-742","source":"Crossref","is-referenced-by-count":12,"title":["A NON-PARAMETRIC BAYESIAN APPROACH FOR PREDICTING RNA SECONDARY STRUCTURES"],"prefix":"10.1142","volume":"08","author":[{"given":"KENGO","family":"SATO","sequence":"first","affiliation":[{"name":"Graduate School of Frontier Sciences, University of Tokyo, 5\u20131\u20135 Kashiwanoha, Kashiwa 277\u20138562, Japan"}]},{"given":"MICHIAKI","family":"HAMADA","sequence":"additional","affiliation":[{"name":"Mizuho Information &amp; Research Institute, Inc., 2\u20133 Kanda-Nishikicho, Chiyoda-ku, Tokyo 101\u20138443, Japan"}]},{"given":"TOUTAI","family":"MITUYAMA","sequence":"additional","affiliation":[{"name":"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 2\u201341\u20136, Aomi, Koto-ku, Tokyo 135\u20130064, Japan"}]},{"given":"KIYOSHI","family":"ASAI","sequence":"additional","affiliation":[{"name":"Graduate School of Frontier Sciences, University of Tokyo, 5\u20131\u20135 Kashiwanoha, Kashiwa 277\u20138562, Japan"}]},{"given":"YASUBUMI","family":"SAKAKIBARA","sequence":"additional","affiliation":[{"name":"Department of Biosciences and Informatics, Keio University, 3\u201314\u20131 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223\u20138522, Japan"}]}],"member":"219","published-online":{"date-parts":[[2011,11,21]]},"reference":[{"key":"rf1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/9.1.133"},{"key":"rf2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg599"},{"key":"rf3","doi-asserted-by":"publisher","DOI":"10.1038\/35103511"},{"key":"rf4","doi-asserted-by":"publisher","DOI":"10.1038\/nature01255"},{"key":"rf5","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.11.2079"},{"key":"rf6","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.23.5112"},{"key":"rf7","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/15.6.446"},{"key":"rf8","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-2-8"},{"key":"rf9","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-3-18"},{"key":"rf10","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg1032"},{"key":"rf11","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-4-44"},{"key":"rf12","doi-asserted-by":"crossref","first-page":"ii237","DOI":"10.1093\/bioinformatics\/bti1139","volume":"21","author":"Sato K.","journal-title":"Bioinformatics"},{"key":"rf13","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-73"},{"key":"rf14","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-5-71"},{"key":"rf15","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-7-400"},{"key":"rf16","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.0020033"},{"key":"rf17","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btl246"},{"key":"rf18","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/16.7.583"},{"key":"rf20","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511790492"},{"key":"rf21","doi-asserted-by":"publisher","DOI":"10.1198\/016214506000000302"},{"key":"rf22","doi-asserted-by":"publisher","DOI":"10.1214\/06-BA104"},{"key":"rf23","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn601"},{"key":"rf24","doi-asserted-by":"publisher","DOI":"10.1261\/rna.2500605"},{"key":"rf25","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0712329105"},{"key":"rf26","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gki081"},{"key":"rf28","doi-asserted-by":"crossref","unstructured":"C.\u00a0Sutton and A.\u00a0McCallum, Introduction to Statistical Relational Learning, eds. 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