{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,11]],"date-time":"2026-06-11T17:30:00Z","timestamp":1781199000491,"version":"3.54.1"},"reference-count":22,"publisher":"World Scientific Pub Co Pte Lt","issue":"02","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J. Bioinform. Comput. Biol."],"published-print":{"date-parts":[[2013,4]]},"abstract":"<jats:p> DNA markers are frequently used to analyze crop varieties, with the coded marker data summarized in a computer-generated table. Such summary tables often provide extraneous data about individual crop genotypes, needlessly complicating and prolonging DNA-based differentiation between crop varieties. At present, it is difficult to identify minimal marker sets \u2014 the smallest sets that can distinguish between all crop varieties listed in a marker-summary table \u2014 due to the absence of algorithms capable of such characterization. Here, we describe the development of just such an algorithm and MinimalMarker, its accompanying Perl-based computer program. MinimalMarker has been validated in variety identification of fruit trees using published datasets and is available for use with both dominant and co-dominant markers, regardless of the number of alleles, including SSR markers with numeric notation. We expect that this program will prove useful not only to genomics researchers but also to government agencies that use DNA markers to support a variety of food-inspection and -labeling regulations. <\/jats:p>","DOI":"10.1142\/s0219720012500229","type":"journal-article","created":{"date-parts":[[2012,9,4]],"date-time":"2012-09-04T08:52:48Z","timestamp":1346748768000},"page":"1250022","source":"Crossref","is-referenced-by-count":38,"title":["MINIMAL MARKER: AN ALGORITHM AND COMPUTER PROGRAM FOR THE IDENTIFICATION OF MINIMAL SETS OF DISCRIMINATING DNA MARKERS FOR EFFICIENT VARIETY IDENTIFICATION"],"prefix":"10.1142","volume":"11","author":[{"given":"HIROSHI","family":"FUJII","sequence":"first","affiliation":[{"name":"Citrus Research Division, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 485-6, Okitsunaka-cho, Shimizu-ku, Shizuoka 424-0292, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"TATSUSHI","family":"OGATA","sequence":"additional","affiliation":[{"name":"Tropical Agriculture Research Front, Japan International Research, Center for Agricultural Sciences, 1091-1 Maezato-Kawarabaru, Ishigaki, Okinawa 907-0002, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"TAKEHIKO","family":"SHIMADA","sequence":"additional","affiliation":[{"name":"Citrus Research Division, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 485-6, Okitsunaka-cho, Shimizu-ku, Shizuoka 424-0292, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"TOMOKO","family":"ENDO","sequence":"additional","affiliation":[{"name":"Citrus Research Division, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 485-6, Okitsunaka-cho, Shimizu-ku, Shizuoka 424-0292, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"HIROYUKI","family":"IKETANI","sequence":"additional","affiliation":[{"name":"NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"TOKUROU","family":"SHIMIZU","sequence":"additional","affiliation":[{"name":"Citrus Research Division, NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 485-6, Okitsunaka-cho, Shimizu-ku, Shizuoka 424-0292, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"TOSHIYA","family":"YAMAMOTO","sequence":"additional","affiliation":[{"name":"NARO Institute of Fruit Tree Science, National Agriculture and Food Research Organization, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"MITSUO","family":"OMURA","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Shizuoka University 836 Ohya, Suruga-ku, Shizuoka, Shizuoka 422-8529, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"219","published-online":{"date-parts":[[2013,4,21]]},"reference":[{"key":"rf2","first-page":"19","volume":"61","author":"Tahira M.","journal-title":"Patent"},{"key":"rf3","doi-asserted-by":"publisher","DOI":"10.1023\/A:1015723805293"},{"key":"rf4","doi-asserted-by":"publisher","DOI":"10.1270\/jsbbs.53.35"},{"key":"rf5","doi-asserted-by":"crossref","first-page":"1341","DOI":"10.1007\/s00122-002-1128-5","volume":"106","author":"Aranzana M. 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