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Experiments with data from the fungus Saccharomyces cerevisiae allowed to measure the performance of ncRNA-Agents, with better sensibility, when compared to Infernal, a widely used tool for annotating ncRNA. Besides, data of the Schizosaccharomyces pombe and Paracoccidioides brasiliensis fungi identified novel putative ncRNAs, which demonstrated the usefulness of our approach. NcRNA-Agents can be be found at: http:\/\/www.biomol.unb.br\/ncrna-agents . <\/jats:p>","DOI":"10.1142\/s0219720015500213","type":"journal-article","created":{"date-parts":[[2015,6,25]],"date-time":"2015-06-25T03:29:49Z","timestamp":1435202989000},"page":"1550021","source":"Crossref","is-referenced-by-count":0,"title":["Knowledge-based reasoning to annotate noncoding RNA using multi-agent system"],"prefix":"10.1142","volume":"13","author":[{"given":"Wosley C.","family":"Arruda","sequence":"first","affiliation":[{"name":"Department of Computer Science, University of Bras\u00edlia, Campus Universit\u00e1rio Darcy Ribeiro Pr\u00e9dio CIC\/EST, ASA Norte, Bras\u00edlia-DF,CEP: 70910\u2013900, Brazil"}]},{"given":"Daniel S.","family":"Souza","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Bras\u00edlia, Campus Universit\u00e1rio Darcy Ribeiro Pr\u00e9dio CIC\/EST, ASA Norte, Bras\u00edlia-DF,CEP: 70910\u2013900, Brazil"}]},{"given":"C\u00e9lia G.","family":"Ralha","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Bras\u00edlia, Campus Universit\u00e1rio Darcy Ribeiro Pr\u00e9dio CIC\/EST, ASA Norte, Bras\u00edlia-DF,CEP: 70910\u2013900, Brazil"}]},{"given":"Maria Emilia M. T.","family":"Walter","sequence":"additional","affiliation":[{"name":"Department of Computer Science, University of Bras\u00edlia, Campus Universit\u00e1rio Darcy Ribeiro Pr\u00e9dio CIC\/EST, ASA Norte, Bras\u00edlia-DF,CEP: 70910\u2013900, Brazil"}]},{"given":"Tain\u00e1","family":"Raiol","sequence":"additional","affiliation":[{"name":"Le\u00f4nidas and Maria Deane Research Center (Fiocruz Amaz\u00f4nia), Rua Teresina, 476 Adrian\u00f3polis, Manaus-AM, CEP: 69027-070, Brazil"}]},{"given":"Marcelo M.","family":"Brigido","sequence":"additional","affiliation":[{"name":"Department of Cellular Biology, Institute of Biology, University of Bras\u00edlia, Campus Universit\u00e1rio Darcy Ribeiro, Pr\u00e9dio do Institute de Biologia, ASA Norte, Bras\u00edlia-DF,CEP: 70910-900, Brazil"}]},{"given":"Peter F.","family":"Stadler","sequence":"additional","affiliation":[{"name":"Department of Computer Science and the Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107, Leipzig, Germany"}]}],"member":"219","published-online":{"date-parts":[[2016,1,18]]},"reference":[{"key":"S0219720015500213BIB001","doi-asserted-by":"publisher","DOI":"10.1038\/35103511"},{"key":"S0219720015500213BIB002","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2005.10.003"},{"key":"S0219720015500213BIB003","doi-asserted-by":"publisher","DOI":"10.1111\/j.1420-9101.2006.01141.x"},{"key":"S0219720015500213BIB004","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(05)80360-2"},{"key":"S0219720015500213BIB005","doi-asserted-by":"publisher","DOI":"10.1007\/BF00818163"},{"key":"S0219720015500213BIB006","volume-title":"An Introduction to Multi-Agent Systems","author":"Wooldridge MJ","year":"2009"},{"key":"S0219720015500213BIB008","doi-asserted-by":"publisher","DOI":"10.1002\/bip.360290621"},{"key":"S0219720015500213BIB009","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(02)00308-X"},{"key":"S0219720015500213BIB010","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genom.8.080706.092419"},{"key":"S0219720015500213BIB011","doi-asserted-by":"publisher","DOI":"10.1093\/bib\/bbp022"},{"key":"S0219720015500213BIB012","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/22.11.2079"},{"key":"S0219720015500213BIB013","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg006"},{"key":"S0219720015500213BIB014","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.5.0955"},{"key":"S0219720015500213BIB015","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-10-239"},{"key":"S0219720015500213BIB016","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/9.1.133"},{"issue":"1","key":"S0219720015500213BIB017","first-page":"D112","volume":"33","author":"Liu C","year":"2005","journal-title":"Nucl. 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