{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:41:52Z","timestamp":1750308112862,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":24,"publisher":"ACM","license":[{"start":{"date-parts":[[2005,3,13]],"date-time":"2005-03-13T00:00:00Z","timestamp":1110672000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2005,3,13]]},"DOI":"10.1145\/1066677.1066721","type":"proceedings-article","created":{"date-parts":[[2005,8,3]],"date-time":"2005-08-03T08:31:47Z","timestamp":1123057907000},"page":"190-194","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Design and evaluation of CATPA"],"prefix":"10.1145","author":[{"given":"Mehmet M.","family":"Dalkilic","sequence":"first","affiliation":[{"name":"Indiana University, Bloomington, Indiana"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Arijit","family":"Sengupta","sequence":"additional","affiliation":[{"name":"Indiana University, Bloomington, Indiana"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2005,3,13]]},"reference":[{"key":"e_1_3_2_1_1_1","volume-title":"The pfam protein families database. Nucleic Acids Research, (302):276--280","author":"Bateman A.","year":"2002","unstructured":"A. Bateman The pfam protein families database. Nucleic Acids Research, (302):276--280 , 2002 . A. Bateman et al. The pfam protein families database. Nucleic Acids Research, (302):276--280, 2002."},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkg120"},{"key":"e_1_3_2_1_3_1","volume-title":"Nucleic Acids Research, (30):17--20","author":"Benson D. A.","year":"2002","unstructured":"D. A. Benson , I. Karsch-Mizrachi , D. J. Lipman , and \"et. al\". Genbank. Nucleic Acids Research, (30):17--20 , 2002 . D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, and \"et. al\". Genbank. Nucleic Acids Research, (30):17--20, 2002."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.genom.3.030502.101529"},{"key":"e_1_3_2_1_5_1","volume-title":"The swiss-prot protein knowledgebase and its supplement trembl","author":"Boeckmann B.","year":"2003","unstructured":"B. Boeckmann , A. Bairoch , R. Apweiler , M. Blatter , A. Estreicher , E. Gasteiger , E. Martin , K. Michoud , C. O'Donovan , I. Phan , S. Pilbout , and M. Schneider . The swiss-prot protein knowledgebase and its supplement trembl in 2003 . Nucleic Acids Research , (31):365--370, 2003. B. Boeckmann, A. Bairoch, R. Apweiler, M. Blatter, A. Estreicher, E. Gasteiger, E. Martin, K. Michoud, C. O'Donovan, I. Phan, S. Pilbout, and M. Schneider. The swiss-prot protein knowledgebase and its supplement trembl in 2003. Nucleic Acids Research, (31):365--370, 2003."},{"key":"e_1_3_2_1_6_1","volume-title":"Predicting functions from protein sequences--where are the bottlenecks? Nat. Genet., (18):313--318","author":"Bork P.","year":"1998","unstructured":"P. Bork and E. Koonin . Predicting functions from protein sequences--where are the bottlenecks? Nat. Genet., (18):313--318 , 1998 . P. Bork and E. Koonin. Predicting functions from protein sequences--where are the bottlenecks? Nat. Genet., (18):313--318, 1998."},{"key":"e_1_3_2_1_7_1","volume-title":"Errors in genome annotation. Trends Genet., (15):132--133","author":"Brenner S.","year":"1999","unstructured":"S. Brenner . Errors in genome annotation. Trends Genet., (15):132--133 , 1999 . S. Brenner. Errors in genome annotation. Trends Genet., (15):132--133, 1999."},{"key":"e_1_3_2_1_8_1","volume-title":"SCOP database in 2002: refinements accomodate structural genomics. Nucleic Acids Research, (30):264--267","author":"Conte L. L.","year":"2002","unstructured":"L. L. Conte , S. E. Brenner , T. J. Hubbard , C. Chothia , and A. G. Murzin . SCOP database in 2002: refinements accomodate structural genomics. Nucleic Acids Research, (30):264--267 , 2002 . L. L. Conte, S. E. Brenner, T. J. Hubbard, C. Chothia, and A. G. Murzin. SCOP database in 2002: refinements accomodate structural genomics. Nucleic Acids Research, (30):264--267, 2002."},{"key":"e_1_3_2_1_9_1","volume-title":"Atlas of Protein Sequence and Structure","author":"Dayhoff M. O.","year":"1972","unstructured":"M. O. Dayhoff , editor. Atlas of Protein Sequence and Structure , volume 5 . National Biomedical Research Foundation , Washington, DC , 1972 . M. O. Dayhoff, editor. Atlas of Protein Sequence and Structure, volume 5. National Biomedical Research Foundation, Washington, DC, 1972."},{"key":"e_1_3_2_1_10_1","volume-title":"Intrinsic errors in genome annotation. Trends Genen., (17):429--431","author":"Devos D.","year":"2001","unstructured":"D. Devos and A. Valencia . Intrinsic errors in genome annotation. Trends Genen., (17):429--431 , 2001 . D. Devos and A. Valencia. Intrinsic errors in genome annotation. Trends Genen., (17):429--431, 2001."},{"key":"e_1_3_2_1_11_1","volume-title":"The prosite database, its status","author":"Falquet L.","year":"2002","unstructured":"L. Falquet , M. Pagni , P. Bucher , N. Hulo , C. Sigrist , The prosite database, its status in 2002 . Nucleic Acids Research , (30):235--238, 2002. L. Falquet, M. Pagni, P. Bucher, N. Hulo, C. Sigrist, et al. The prosite database, its status in 2002. Nucleic Acids Research, (30):235--238, 2002."},{"key":"e_1_3_2_1_12_1","volume-title":"Creating the gene ontology resource: design and implementation. Genome Res., (11):1425--1433","author":"Gene Ontology Consortium","year":"2001","unstructured":"Gene Ontology Consortium . Creating the gene ontology resource: design and implementation. Genome Res., (11):1425--1433 , 2001 . Gene Ontology Consortium. Creating the gene ontology resource: design and implementation. Genome Res., (11):1425--1433, 2001."},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780199637911.001.0001","volume-title":"Bioinformatics sequence, structure and databanks","author":"Higgins D.","year":"2000","unstructured":"D. Higgins and W. Taylor , editors . Bioinformatics sequence, structure and databanks . Oxford University Press , Oxford, UK , 2000 . D. Higgins and W. Taylor, editors. Bioinformatics sequence, structure and databanks. Oxford University Press, Oxford, UK, 2000."},{"issue":"12","key":"e_1_3_2_1_14_1","first-page":"1","article-title":"Quod erat demonstradum? the mystery of experimental validation of apparently erroneous computational analyses of protein sequences","volume":"2","author":"Iyer L.","year":"2001","unstructured":"L. Iyer Quod erat demonstradum? the mystery of experimental validation of apparently erroneous computational analyses of protein sequences . Genome Bio. , 2 ( 12 ): 1 -- 11 , 2001 . L. Iyer et al. Quod erat demonstradum? the mystery of experimental validation of apparently erroneous computational analyses of protein sequences. Genome Bio., 2(12):1--11, 2001.","journal-title":"Genome Bio."},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg021"},{"key":"e_1_3_2_1_16_1","volume-title":"The kegg database at genomenet. Nucleic Acids Research, (30):42--46","author":"Kanehisa M.","year":"2002","unstructured":"M. Kanehisa , S. Goto , S. Kawashima , and A. Nakaya . The kegg database at genomenet. Nucleic Acids Research, (30):42--46 , 2002 . M. Kanehisa, S. Goto, S. Kawashima, and A. Nakaya. The kegg database at genomenet. Nucleic Acids Research, (30):42--46, 2002."},{"key":"e_1_3_2_1_17_1","unstructured":"D. Norman. The Design of Everyday things. Doubleday Currency 1990. D. Norman. The Design of Everyday things. Doubleday Currency 1990."},{"key":"e_1_3_2_1_18_1","volume-title":"Computational Methods in Molecular Biology","author":"Salzberg S.","year":"1999","unstructured":"S. Salzberg , D. Searls , and S. Kasif . Computational Methods in Molecular Biology . Elsevier , 1999 . S. Salzberg, D. Searls, and S. Kasif. Computational Methods in Molecular Biology. Elsevier, 1999."},{"key":"e_1_3_2_1_19_1","volume-title":"Prosite: a documented databases using patterns and profiles as motif descriptors. Brief Bioinformatics, (3):265--274","author":"Sigrist C.","year":"2002","unstructured":"C. Sigrist , L. Cerutti , N. Hulo , Prosite: a documented databases using patterns and profiles as motif descriptors. Brief Bioinformatics, (3):265--274 , 2002 . C. Sigrist, L. Cerutti, N. Hulo, et al. Prosite: a documented databases using patterns and profiles as motif descriptors. Brief Bioinformatics, (3):265--274, 2002."},{"key":"e_1_3_2_1_20_1","volume-title":"The EMBL nucleotide sequence database. Nucleic Acids Research, (30):21--26","author":"Stoesser G.","year":"2002","unstructured":"G. Stoesser , W. Baker , A. \"van den Broek\", E. Camon , M. Garcia-Pastor , The EMBL nucleotide sequence database. Nucleic Acids Research, (30):21--26 , 2002 . G. Stoesser, W. Baker, A. \"van den Broek\", E. Camon, M. Garcia-Pastor, et al. The EMBL nucleotide sequence database. Nucleic Acids Research, (30):21--26, 2002."},{"key":"e_1_3_2_1_21_1","volume-title":"The flybase database of the drosophila genome projects and community literature. Nucleic Acids Research, (31)","author":"The FlyBase Consortium","year":"2003","unstructured":"The FlyBase Consortium . The flybase database of the drosophila genome projects and community literature. Nucleic Acids Research, (31) , 2003 . http:\/\/flybase.org. The FlyBase Consortium. The flybase database of the drosophila genome projects and community literature. Nucleic Acids Research, (31), 2003. http:\/\/flybase.org."},{"key":"e_1_3_2_1_22_1","volume-title":"The protein data bank: unifying the archive. Nucleic Acids Research, (30):245--248","author":"Westbrook J.","year":"2002","unstructured":"J. Westbrook The protein data bank: unifying the archive. Nucleic Acids Research, (30):245--248 , 2002 . J. Westbrook et al. The protein data bank: unifying the archive. Nucleic Acids Research, (30):245--248, 2002."},{"key":"e_1_3_2_1_23_1","volume-title":"The protein information resource. Nucleic Acids Research, (31):in press","author":"Wu C.","year":"2003","unstructured":"C. Wu The protein information resource. Nucleic Acids Research, (31):in press , 2003 . C. Wu et al. The protein information resource. Nucleic Acids Research, (31):in press, 2003."},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1016\/S1476-9271(02)00098-1"}],"event":{"name":"SAC05: The 2005 ACM Symposium on Applied Computing","sponsor":["SIGAPP ACM Special Interest Group on Applied Computing"],"location":"Santa Fe New Mexico","acronym":"SAC05"},"container-title":["Proceedings of the 2005 ACM symposium on Applied computing"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1066677.1066721","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/1066677.1066721","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T16:08:13Z","timestamp":1750262893000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1066677.1066721"}},"subtitle":["curation and alignment tool for protein analysis"],"short-title":[],"issued":{"date-parts":[[2005,3,13]]},"references-count":24,"alternative-id":["10.1145\/1066677.1066721","10.1145\/1066677"],"URL":"https:\/\/doi.org\/10.1145\/1066677.1066721","relation":{},"subject":[],"published":{"date-parts":[[2005,3,13]]},"assertion":[{"value":"2005-03-13","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}