{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:41:47Z","timestamp":1750308107952,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":39,"publisher":"ACM","license":[{"start":{"date-parts":[[2005,6,25]],"date-time":"2005-06-25T00:00:00Z","timestamp":1119657600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2005,6,25]]},"DOI":"10.1145\/1102256.1102318","type":"proceedings-article","created":{"date-parts":[[2006,2,6]],"date-time":"2006-02-06T15:52:40Z","timestamp":1139241160000},"page":"281-288","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["There's more to a model than code"],"prefix":"10.1145","author":[{"given":"Janet","family":"Wiles","sequence":"first","affiliation":[{"name":"The University of Queensland"}]},{"given":"Nic","family":"Geard","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]},{"given":"James","family":"Watson","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]},{"given":"Kai","family":"Willadsen","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]},{"given":"John","family":"Mattick","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]},{"given":"Daniel","family":"Bradley","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]},{"given":"Jennifer","family":"Hallinan","sequence":"additional","affiliation":[{"name":"The University of Queensland"}]}],"member":"320","published-online":{"date-parts":[[2005,6,25]]},"reference":[{"key":"e_1_3_2_1_1_1","unstructured":"\"Complex Systems Patterns Repository. http:\/\/www.itee.uq.edu.au\/~patterns\/repository\/.\" \"Complex Systems Patterns Repository. http:\/\/www.itee.uq.edu.au\/~patterns\/repository\/.\""},{"volume-title":"Systems Patterns Workshop I","year":"2005","key":"e_1_3_2_1_2_1","unstructured":"\"Complex Systems Patterns Workshop I June 2005 http:\/\/www.itee.uq.edu.au\/~patterns\/PatternsWorkshopI.html; Complex Systems Patterns Workshop II December 2005 http:\/\/www.itee.uq.edu.au\/~patterns\/~PatternsWorkshopII.html.\" \"Complex Systems Patterns Workshop I June 2005 http:\/\/www.itee.uq.edu.au\/~patterns\/PatternsWorkshopI.html; Complex Systems Patterns Workshop II December 2005 http:\/\/www.itee.uq.edu.au\/~patterns\/~PatternsWorkshopII.html.\""},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1038\/35019019"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature03178"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btg087"},{"key":"e_1_3_2_1_6_1","volume-title":"MA: Maiden: Blackwell Science","author":"Carroll S. B.","year":"2001","unstructured":"S. B. Carroll , J. Grenier , and S. D. Weatherbee , From DNA to Diversity: Molecular genetics and the evolution of animal design . MA: Maiden: Blackwell Science , 2001 . S. B. Carroll, J. Grenier, and S. D. Weatherbee, From DNA to Diversity: Molecular genetics and the evolution of animal design. MA: Maiden: Blackwell Science, 2001."},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1038\/75556"},{"key":"e_1_3_2_1_8_1","first-page":"311","volume-title":"common questions and answers,\" in The Patterns Handbook: Techniques, Strategies, and Applications","author":"Coplien J. O.","year":"1998","unstructured":"J. O. Coplien , \"Software design patterns : common questions and answers,\" in The Patterns Handbook: Techniques, Strategies, and Applications , L. Rising, Ed. NY : Cambridge University Press , 1998 , pp. 311 -- 320 . J. O. Coplien, \"Software design patterns: common questions and answers,\" in The Patterns Handbook: Techniques, Strategies, and Applications, L. Rising, Ed. NY: Cambridge University Press, 1998, pp. 311--320."},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"crossref","first-page":"497","DOI":"10.7551\/mitpress\/1432.003.0068","volume-title":"Simulation models as opaque thought experiments,\" in Artificial Life VII: Proceedings of the Seventh International Conference on Artificial Life","author":"Di Paolo E. A.","year":"2000","unstructured":"E. A. Di Paolo , J. Noble , and S. Bullock , \" Simulation models as opaque thought experiments,\" in Artificial Life VII: Proceedings of the Seventh International Conference on Artificial Life , M. Bedau, J. McCaskill, N. Packard, and S. Rasmussen, Eds. Cambridge, MA : MIT Press , 2000 , pp. 497 -- 506 . E. A. Di Paolo, J. Noble, and S. Bullock, \"Simulation models as opaque thought experiments,\" in Artificial Life VII: Proceedings of the Seventh International Conference on Artificial Life, M. Bedau, J. McCaskill, N. Packard, and S. Rasmussen, Eds. Cambridge, MA: MIT Press, 2000, pp. 497--506."},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1038\/35053181"},{"key":"e_1_3_2_1_11_1","first-page":"1966","article-title":"Proceedings of the colloquium held at Tihany","author":"Erdos P.","year":"1966","unstructured":"P. Erdos and G. Katona , \" Proceedings of the colloquium held at Tihany , Hungary , September 1966 ,\" 1966 . P. Erdos and G. Katona, \"Proceedings of the colloquium held at Tihany, Hungary, September 1966,\" 1966.","journal-title":"Hungary"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1088\/1469-7688\/4\/1\/C01"},{"key":"e_1_3_2_1_13_1","volume-title":"Design Patterns: Elements of Reusable Object-Oriented Software: Addison-Wesley","author":"Gamma E.","year":"1994","unstructured":"E. Gamma , R. Helm , R. Johnson , and J. Vlissides , Design Patterns: Elements of Reusable Object-Oriented Software: Addison-Wesley , 1994 . E. Gamma, R. Helm, R. Johnson, and J. Vlissides, Design Patterns: Elements of Reusable Object-Oriented Software: Addison-Wesley, 1994."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1162\/1064546054407202"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0378-4371(99)00425-2"},{"key":"e_1_3_2_1_16_1","volume-title":"Topology and biology,\" in IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology","author":"Hallinan J.","year":"2004","unstructured":"J. Hallinan , \"Cluster analysis of the p53 genetic regulatory network : Topology and biology,\" in IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology , vol. 7-- 8 October. San Diego , 2004 . J. Hallinan, \"Cluster analysis of the p53 genetic regulatory network: Topology and biology,\" in IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, vol. 7--8 October. San Diego, 2004."},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.biosystems.2004.02.004"},{"key":"e_1_3_2_1_18_1","volume-title":"Asynchronous Dynamics of an Artificial Genetic Regulatory Network,\" presented at ALife IX The 9th International Conference on Artificial Life","author":"Hallinan J.","year":"2004","unstructured":"J. Hallinan and J. Wiles , \" Asynchronous Dynamics of an Artificial Genetic Regulatory Network,\" presented at ALife IX The 9th International Conference on Artificial Life , Boston, Ma , 2004 . J. Hallinan and J. Wiles, \"Asynchronous Dynamics of an Artificial Genetic Regulatory Network,\" presented at ALife IX The 9th International Conference on Artificial Life, Boston, Ma, 2004."},{"key":"e_1_3_2_1_19_1","first-page":"495","article-title":"How learning can guide evolution","volume":"1","author":"Hinton G. E.","year":"1987","unstructured":"G. E. Hinton and S. Nowlan , \" How learning can guide evolution ,\" Complex Systems , vol. 1 , pp. 495 -- 502 , 1987 . G. E. Hinton and S. Nowlan, \"How learning can guide evolution,\" Complex Systems, vol. 1, pp. 495--502, 1987.","journal-title":"Complex Systems"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780195079517.001.0001","volume-title":"The Origins of Order: Self-Organization and Selection in Evolution","author":"Kauffman S. A.","year":"1993","unstructured":"S. A. Kauffman , The Origins of Order: Self-Organization and Selection in Evolution . Oxford : Oxford University Press , 1993 . S. A. Kauffman, The Origins of Order: Self-Organization and Selection in Evolution. Oxford: Oxford University Press, 1993."},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1038\/scientificamerican1004-60"},{"key":"e_1_3_2_1_22_1","unstructured":"G. E. Miller \"Artificial Life as Theoretical Biology: How to do real science with computer simulation \" School of Cognitive and Computing Sciences University of Sussex 1995. G. E. Miller \"Artificial Life as Theoretical Biology: How to do real science with computer simulation \" School of Cognitive and Computing Sciences University of Sussex 1995."},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.98.2.404"},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevLett.84.3201"},{"key":"e_1_3_2_1_25_1","unstructured":"P. Nielsen \"CellML http:\/\/www.cellml.org\/ Last accessed 27 April 2005.\" P. Nielsen \"CellML http:\/\/www.cellml.org\/ Last accessed 27 April 2005.\""},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1145\/1068009.1068107"},{"key":"e_1_3_2_1_27_1","first-page":"685","article-title":"Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion","volume":"47","author":"Sole R. V.","year":"2003","unstructured":"R. V. Sole , P. Fernandez , and S. A. Kauffman , \" Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion ,\" International Journal of Developmental Biology , vol. 47 , pp. 685 -- 694 , 2003 . R. V. Sole, P. Fernandez, and S. A. Kauffman, \"Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion,\" International Journal of Developmental Biology, vol. 47, pp. 685--694, 2003.","journal-title":"International Journal of Developmental Biology"},{"key":"e_1_3_2_1_28_1","doi-asserted-by":"publisher","DOI":"10.1016\/0012-1606(83)90201-4"},{"key":"e_1_3_2_1_29_1","volume-title":"Controlling Complexity in Biological Networks,\" in Poster presented at the 11th International Conference on Intelligent Systems for Molecular Biology","author":"Tonkes B.","year":"2003","unstructured":"B. Tonkes , J. Wiles , and J. S. Mattick , \" Controlling Complexity in Biological Networks,\" in Poster presented at the 11th International Conference on Intelligent Systems for Molecular Biology , 2003 . B. Tonkes, J. Wiles, and J. S. Mattick, \"Controlling Complexity in Biological Networks,\" in Poster presented at the 11th International Conference on Intelligent Systems for Molecular Biology, 2003."},{"key":"e_1_3_2_1_30_1","unstructured":"VirtualCell \"National Resource for Cell Analysis and Modeling (NRCAM) http:\/\/www.nrcam.uchc.edu\/ Last accessed 27 April 2005.\" VirtualCell \"National Resource for Cell Analysis and Modeling (NRCAM) http:\/\/www.nrcam.uchc.edu\/ Last accessed 27 April 2005.\""},{"key":"e_1_3_2_1_31_1","unstructured":"W3C \"Extensible Markup Language (XML) http:\/\/www.w3.org\/XML\/ Last accessed 27 April 2005.\" W3C \"Extensible Markup Language (XML) http:\/\/www.w3.org\/XML\/ Last accessed 27 April 2005.\""},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.biosystems.2004.05.016"},{"key":"e_1_3_2_1_33_1","unstructured":"J. Watson J. Hanan and J. Wiles \"Practical software engineering techniques for regulatory models in biology. http:\/\/www.itee.uq.edu.au\/~patterns\/papers\/ unpublished \" Technical Report for the ARC Centre for Complex Systems. 49 pages. 2005. J. Watson J. Hanan and J. Wiles \"Practical software engineering techniques for regulatory models in biology. http:\/\/www.itee.uq.edu.au\/~patterns\/papers\/ unpublished \" Technical Report for the ARC Centre for Complex Systems. 49 pages. 2005."},{"key":"e_1_3_2_1_34_1","first-page":"288","volume-title":"Towards more relevant evolutionary models: Integrating an artificial genome with a developmental phenotype,\" in The Australian Conference on Artificial Life (ACAL","author":"Watson J.","year":"2003","unstructured":"J. Watson , J. Wiles , and J. Hanan , \" Towards more relevant evolutionary models: Integrating an artificial genome with a developmental phenotype,\" in The Australian Conference on Artificial Life (ACAL 2003 ), 2003, pp. 288 -- 298 . J. Watson, J. Wiles, and J. Hanan, \"Towards more relevant evolutionary models: Integrating an artificial genome with a developmental phenotype,\" in The Australian Conference on Artificial Life (ACAL 2003), 2003, pp. 288--298."},{"key":"e_1_3_2_1_35_1","doi-asserted-by":"publisher","DOI":"10.1007\/11508069_69"},{"key":"e_1_3_2_1_36_1","doi-asserted-by":"publisher","DOI":"10.1038\/35004572"},{"key":"e_1_3_2_1_37_1","volume-title":"Algorithms + Data Structures = Programs: Prentice-Hall","author":"Wirth N.","year":"1976","unstructured":"N. Wirth , Algorithms + Data Structures = Programs: Prentice-Hall , 1976 . N. Wirth, Algorithms + Data Structures = Programs: Prentice-Hall, 1976."},{"key":"e_1_3_2_1_38_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0960-9822(03)00067-8"},{"key":"e_1_3_2_1_39_1","volume-title":"NASA\/DoD Conference on Evolvable Hardware,\" IEEE Press","author":"Zebulum R. S.","year":"2004","unstructured":"R. S. Zebulum , D. Gwaltney , G. Hornby , D. Keymeulen , J. Lohn , and A. Stoica , \" NASA\/DoD Conference on Evolvable Hardware,\" IEEE Press , 2004 . R. S. Zebulum, D. Gwaltney, G. Hornby, D. Keymeulen, J. Lohn, and A. Stoica, \"NASA\/DoD Conference on Evolvable Hardware,\" IEEE Press, 2004."}],"event":{"name":"GECCO05: Genetic and Evolutionary Computation Conference","sponsor":["SIGEVO ACM Special Interest Group on Genetic and Evolutionary Computation"],"location":"Washington D.C.","acronym":"GECCO05"},"container-title":["Proceedings of the 7th annual workshop on Genetic and evolutionary computation"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1102256.1102318","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/1102256.1102318","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T16:08:08Z","timestamp":1750262888000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1102256.1102318"}},"subtitle":["understanding and formalizing<i>in silico<\/i>modeling experience"],"short-title":[],"issued":{"date-parts":[[2005,6,25]]},"references-count":39,"alternative-id":["10.1145\/1102256.1102318","10.1145\/1102256"],"URL":"https:\/\/doi.org\/10.1145\/1102256.1102318","relation":{},"subject":[],"published":{"date-parts":[[2005,6,25]]},"assertion":[{"value":"2005-06-25","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}