{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T00:26:28Z","timestamp":1761611188181,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":41,"publisher":"ACM","license":[{"start":{"date-parts":[[2006,5,23]],"date-time":"2006-05-23T00:00:00Z","timestamp":1148342400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2006,5,23]]},"DOI":"10.1145\/1135777.1135826","type":"proceedings-article","created":{"date-parts":[[2006,7,24]],"date-time":"2006-07-24T16:53:01Z","timestamp":1153759981000},"page":"317-326","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":21,"title":["Knowledge modeling and its application in life sciences"],"prefix":"10.1145","author":[{"given":"Satya S.","family":"Sahoo","sequence":"first","affiliation":[{"name":"University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christopher","family":"Thomas","sequence":"additional","affiliation":[{"name":"University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amit","family":"Sheth","sequence":"additional","affiliation":[{"name":"University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"William S.","family":"York","sequence":"additional","affiliation":[{"name":"University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Samir","family":"Tartir","sequence":"additional","affiliation":[{"name":"University of Georgia, Athens, GA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2006,5,23]]},"reference":[{"key":"e_1_3_2_1_1_1","first-page":"490","volume-title":"Conf. on Software Engineering & Knowledge Engineering (SEKE2004)","author":"Aleman-Meza B.","year":"2004","unstructured":"B. Aleman-Meza , C. Halaschek , A. Sheth , I. B. Arpinar , G. Sannapareddy , \"SWETO : Large-Scale Semantic Web Test-bed,\u00f6 Proc. of the16th Intl . Conf. on Software Engineering & Knowledge Engineering (SEKE2004) : Intl. Workshop on Ontology in Action, Banff, Canada , June 21-24, 2004 , pp. 490 -- 493 . http:\/\/lsdis.cs.uga.edu\/library\/resources\/ B. Aleman-Meza, C. Halaschek, A. Sheth, I. B. Arpinar, G. Sannapareddy, \"SWETO: Large-Scale Semantic Web Test-bed,\u00f6 Proc. of the16th Intl. Conf. on Software Engineering & Knowledge Engineering (SEKE2004): Intl. Workshop on Ontology in Action, Banff, Canada, June 21-24, 2004, pp. 490--493. http:\/\/lsdis.cs.uga.edu\/library\/resources\/"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1038\/75556"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"crossref","unstructured":"A. Bohne-Lang T. Lang E. Forster C. W. von der Lieth 2001. LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res. 336:1--11  A. Bohne-Lang T. Lang E. Forster C. W. von der Lieth 2001. LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res. 336:1--11","DOI":"10.1016\/S0008-6215(01)00230-0"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.4018\/jswis.2005040103"},{"key":"e_1_3_2_1_5_1","volume-title":"CarbBank. Glycobiology, 2","author":"Doubet S.","year":"1992","unstructured":"S. Doubet and P. Albersheim , CarbBank. Glycobiology, 2 , 1992 , 505 S. Doubet and P. Albersheim, CarbBank. Glycobiology, 2, 1992, 505"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1145\/503124.503150"},{"key":"e_1_3_2_1_7_1","unstructured":"R. Guha and R. McCool The tap knowledge base. http:\/\/tap.stanford.edu\/  R. Guha and R. McCool The tap knowledge base. http:\/\/tap.stanford.edu\/"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.websem.2003.07.001"},{"key":"e_1_3_2_1_9_1","unstructured":"http:\/\/www.genome.ad.jp\/kegg\/  http:\/\/www.genome.ad.jp\/kegg\/"},{"key":"e_1_3_2_1_10_1","unstructured":"http:\/\/www.glycosciences.de\/sweetdb\/index.php  http:\/\/www.glycosciences.de\/sweetdb\/index.php"},{"key":"e_1_3_2_1_11_1","unstructured":"http:\/\/ncbi.nlm.nih.gov subdirectory \/repository\/carbbank  http:\/\/ncbi.nlm.nih.gov subdirectory \/repository\/carbbank"},{"key":"e_1_3_2_1_12_1","unstructured":"http:\/\/www.glycosciences.de\/tools\/linucs\/  http:\/\/www.glycosciences.de\/tools\/linucs\/"},{"key":"e_1_3_2_1_13_1","unstructured":"http:\/\/www.daml.org\/2003\/11\/swrl\/  http:\/\/www.daml.org\/2003\/11\/swrl\/"},{"key":"e_1_3_2_1_14_1","unstructured":"http:\/\/obo.sourceforge.net\/  http:\/\/obo.sourceforge.net\/"},{"key":"e_1_3_2_1_15_1","unstructured":"http:\/\/www.biopax.org\/  http:\/\/www.biopax.org\/"},{"key":"e_1_3_2_1_16_1","unstructured":"http:\/\/www.geneontology.org\/  http:\/\/www.geneontology.org\/"},{"key":"e_1_3_2_1_17_1","volume-title":"Nomenclature of Cyclitols. Recommendations, 1973","author":"IUPAC","year":"1976","unstructured":"IUPAC Commission on the Nomenclature of Organic Chemistry (CNOC) and IUPAC-IUB Commission on Biochemical Nomenclature (CBN) . Nomenclature of Cyclitols. Recommendations, 1973 . Biochem J. 1976 Jan 1;153(1):23--31 IUPAC Commission on the Nomenclature of Organic Chemistry (CNOC) and IUPAC-IUB Commission on Biochemical Nomenclature (CBN). Nomenclature of Cyclitols. Recommendations, 1973. Biochem J. 1976 Jan 1;153(1):23--31"},{"key":"e_1_3_2_1_18_1","first-page":"62","volume-title":"Proc. ITi and KNOWS Conference of the 15th IFIP World Computer Congress","author":"Jones D. M.","year":"1998","unstructured":"D. M. Jones , T. J. M. Bench-Capon , and P.R.S. Visser , Methodologies for Ontology Development . In J. Cuena , editor , Proc. ITi and KNOWS Conference of the 15th IFIP World Computer Congress , pages 62 - 75 , London, UK , 1998 . Chapman and Hall Ltd. D. M. Jones, T. J. M. Bench-Capon, and P.R.S. Visser, Methodologies for Ontology Development. In J. Cuena, editor, Proc. ITi and KNOWS Conference of the 15th IFIP World Computer Congress, pages 62-75, London, UK, 1998. Chapman and Hall Ltd."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/28.1.27"},{"key":"e_1_3_2_1_20_1","volume-title":"Nucleic Acids Research","author":"A.","year":"2002","unstructured":"A. Lo_, P. Bunsmann , A. Bohne , A. Lo_, E. Schwarzer , E. Lang , and C. W. Von der Lieth, SWEET-DB: an attempt to create annotated data collections for carbohydrates , Nucleic Acids Research , 2002 January 1; Vol 30, No. 1, 405--408. A. Lo_, P. Bunsmann, A. Bohne, A. Lo_, E. Schwarzer, E. Lang, and C. W. Von der Lieth, SWEET-DB: an attempt to create annotated data collections for carbohydrates, Nucleic Acids Research, 2002 January 1; Vol 30, No. 1, 405--408."},{"key":"e_1_3_2_1_21_1","unstructured":"NCRR Integrated Technology Resource for Biomedical Glycomics:http:\/\/lsdis.cs.uga.edu\/projects\/glycomics\/ http:\/\/cell.ccrc.uga.edu\/world\/glycomics\/researchprogram.php)  NCRR Integrated Technology Resource for Biomedical Glycomics:http:\/\/lsdis.cs.uga.edu\/projects\/glycomics\/ http:\/\/cell.ccrc.uga.edu\/world\/glycomics\/researchprogram.php)"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1145\/505168.505170"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1109\/5254.920601"},{"key":"e_1_3_2_1_24_1","volume-title":"Knowledge Systems Laboratory","author":"Noy N. F.","year":"2001","unstructured":"N. F. Noy & D. L. McGuinness , \" Ontology Development 101 : A Guide to Creating Your First Ontology \". Knowledge Systems Laboratory , March ( 2001 ). N. F. Noy & D. L. McGuinness, \"Ontology Development 101: A Guide to Creating Your First Ontology\". Knowledge Systems Laboratory, March (2001)."},{"key":"e_1_3_2_1_25_1","volume-title":"Practice and Applications","author":"Ramachandran D.","year":"2005","unstructured":"D. Ramachandran , P. Reagan , K. Goolsbey , First-Orderized ResearchCyc : Expressivity and Efficiency in a Common-Sense Ontology. In Papers from the AAAI Workshop on Contexts and Ontologies: Theory , Practice and Applications . Pittsburgh, Pennsylvania , July 2005 . D. Ramachandran, P. Reagan, K. Goolsbey, First-Orderized ResearchCyc: Expressivity and Efficiency in a Common-Sense Ontology. In Papers from the AAAI Workshop on Contexts and Ontologies: Theory, Practice and Applications. Pittsburgh, Pennsylvania, July 2005."},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1145\/1060745.1060776"},{"key":"e_1_3_2_1_27_1","volume-title":"International Symposium on Web Services for Computational Biology and Bioinformatics, VBI","author":"Sahoo S. S.","year":"2005","unstructured":"S. S. Sahoo , A. P. Sheth , W. S. York , J. A. Miller , \" Semantic Web Services for N- Glycosylation Process\" , International Symposium on Web Services for Computational Biology and Bioinformatics, VBI , Blacksburg, VA , May 26-27, 2005 . S. S. Sahoo, A. P. Sheth, W. S. York, J. A. Miller, \"Semantic Web Services for N-Glycosylation Process\", International Symposium on Web Services for Computational Biology and Bioinformatics, VBI, Blacksburg, VA, May 26-27, 2005."},{"key":"e_1_3_2_1_28_1","first-page":"2802","volume":"2005","author":"Sahoo S. S.","year":"2005","unstructured":"S. S. Sahoo , C. Thomas , A. Sheth , C. Henson , W. S. York , GLYDE-an expressive XML standard for the representation of glycan structure., Carbohydr Res. 2005 Dec 30;340(18): 2802 -- 2807 . Epub 2005 Oct 20. PMID: 16242678 S. S. Sahoo, C. Thomas, A. Sheth, C. Henson, W. S. York, GLYDE-an expressive XML standard for the representation of glycan structure., Carbohydr Res. 2005 Dec 30;340(18):2802--7. Epub 2005 Oct 20. PMID: 16242678","journal-title":"Res."},{"key":"e_1_3_2_1_29_1","unstructured":"S. Schulze-Kremer Ontologies for molecular biology and bioinformatics In Silico Biology 2 0017 (2002)  S. Schulze-Kremer Ontologies for molecular biology and bioinformatics In Silico Biology 2 0017 (2002)"},{"key":"e_1_3_2_1_30_1","doi-asserted-by":"publisher","DOI":"10.1109\/MIC.2002.1020330"},{"volume-title":"Enhancing the Power of the Internet: Studies in Fuzziness and Soft Computing, M. Nikravesh, L. A. Zadeh, B. Azvine, R. R. Yager (Eds)","author":"Sheth A.","key":"e_1_3_2_1_31_1","unstructured":"A. Sheth , I. B. Arpinar , and V. Kashyap , Relationships at the Heart of Semantic Web: Modeling, Discovering, and Exploiting Complex Semantic Relationships , in Enhancing the Power of the Internet: Studies in Fuzziness and Soft Computing, M. Nikravesh, L. A. Zadeh, B. Azvine, R. R. Yager (Eds) , Springer-Verlag , 63--94 A. Sheth, I. B. Arpinar, and V. Kashyap, Relationships at the Heart of Semantic Web: Modeling, Discovering, and Exploiting Complex Semantic Relationships, in Enhancing the Power of the Internet: Studies in Fuzziness and Soft Computing, M. Nikravesh, L. A. Zadeh, B. Azvine, R. R. Yager (Eds), Springer-Verlag, 63--94"},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt0905-1095"},{"key":"e_1_3_2_1_33_1","first-page":"398","volume":"2000","author":"Stevens R.","unstructured":"R. Stevens , C. A. Goble and S. Bechhofer , Ontology-based Knowledge Representation for Bioinformatics, Briefings in Bioinformatics. 2000 Nov;1(4): 398 -- 414 . R. Stevens, C. A. Goble and S. Bechhofer, Ontology-based Knowledge Representation for Bioinformatics, Briefings in Bioinformatics. 2000 Nov;1(4):398--414.","journal-title":"Ontology-based Knowledge Representation for Bioinformatics, Briefings in Bioinformatics."},{"key":"e_1_3_2_1_34_1","doi-asserted-by":"crossref","unstructured":"R. Stevens P. Baker S. Bechhofer G. Ng A. Jacoby N. W. Paton C. A. Goble A. Brass TAMBIS: transparent access to multiple bioinformatics information sources Bioinformatics. 2000 Feb;16(2):184--5.  R. Stevens P. Baker S. Bechhofer G. Ng A. Jacoby N. W. Paton C. A. Goble A. Brass TAMBIS: transparent access to multiple bioinformatics information sources Bioinformatics. 2000 Feb;16(2):184--5.","DOI":"10.1093\/bioinformatics\/16.2.184"},{"key":"e_1_3_2_1_35_1","first-page":"469","author":"Stoeckert C. J.","year":"2002","unstructured":"C. J. Stoeckert Jr , H. C. Causton & C. A. Ball , Microarray databases: standards and ontologies., Nature Genetics , 32 Supplement - Chipping Forecast II , ( December 2002 ), pp. 469 -- 473 C. J. Stoeckert Jr, H. C. Causton & C. A. Ball, Microarray databases: standards and ontologies., Nature Genetics, 32 Supplement - Chipping Forecast II, (December 2002), pp. 469--473","journal-title":"Chipping Forecast"},{"key":"e_1_3_2_1_36_1","unstructured":"SUMO\n  : http:\/\/ontology.teknowledge.com\/  SUMO: http:\/\/ontology.teknowledge.com\/"},{"key":"e_1_3_2_1_37_1","doi-asserted-by":"publisher","DOI":"10.4052\/tigg.15.235"},{"key":"e_1_3_2_1_38_1","volume-title":"IEEE ICDM 2005 Workshop on Knowledge Acquisition from Distributed, Autonomous, Semantically Heterogeneous Data and Knowledge Sources","author":"Tartir S.","year":"2005","unstructured":"S. Tartir , I. B. Arpinar , M. Moore , A. Sheth , B. Aleman-Meza , OntoQA : Metric-Based Ontology Quality Analysis , IEEE ICDM 2005 Workshop on Knowledge Acquisition from Distributed, Autonomous, Semantically Heterogeneous Data and Knowledge Sources . Houston, Texas , November 27, 2005 S. Tartir, I. B. Arpinar, M. Moore, A. Sheth, B. Aleman-Meza, OntoQA: Metric-Based Ontology Quality Analysis, IEEE ICDM 2005 Workshop on Knowledge Acquisition from Distributed, Autonomous, Semantically Heterogeneous Data and Knowledge Sources. Houston, Texas, November 27, 2005"},{"key":"e_1_3_2_1_39_1","first-page":"247","volume":"2003","author":"Taylor C. F.","unstructured":"C. F. Taylor A systematic approach to modeling, capturing, and disseminating proteomics experimental data\u00f6 , Nat. Biotechnol. 2003 Mar; 21(3): 247 -- 254 C. F. Taylor et al. \"A systematic approach to modeling, capturing, and disseminating proteomics experimental data\u00f6, Nat. Biotechnol. 2003 Mar; 21(3):247--54","journal-title":"Nat. Biotechnol."},{"key":"e_1_3_2_1_40_1","doi-asserted-by":"publisher","DOI":"10.1145\/1013367.1013437"},{"key":"e_1_3_2_1_41_1","volume-title":"Provenance in Proc. 3rd International Semantic Web Conference ISWC2004","author":"Zhao J.","year":"2004","unstructured":"J. Zhao , C. Wroe , C. Goble , R. Stevens , D. Quan , M. Greenwood , Using Semantic Web Technologies for Representing e- Science Provenance in Proc. 3rd International Semantic Web Conference ISWC2004 , Hiroshima, Japan , 9-11 Nov 2004 , Springer LNCS 3298 J. Zhao, C. Wroe, C. Goble, R. Stevens, D. Quan, M. Greenwood, Using Semantic Web Technologies for Representing e-Science Provenance in Proc. 3rd International Semantic Web Conference ISWC2004, Hiroshima, Japan, 9-11 Nov 2004, Springer LNCS 3298"}],"event":{"name":"WWW06: The 15th International World Wide Web Conference 2006","sponsor":["SIGWEB ACM Special Interest Group on Hypertext, Hypermedia, and Web","ACM Association for Computing Machinery"],"location":"Edinburgh Scotland","acronym":"WWW06"},"container-title":["Proceedings of the 15th international conference on World Wide Web"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1135777.1135826","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/1135777.1135826","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T15:06:33Z","timestamp":1750259193000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1135777.1135826"}},"subtitle":["a tale of two ontologies"],"short-title":[],"issued":{"date-parts":[[2006,5,23]]},"references-count":41,"alternative-id":["10.1145\/1135777.1135826","10.1145\/1135777"],"URL":"https:\/\/doi.org\/10.1145\/1135777.1135826","relation":{},"subject":[],"published":{"date-parts":[[2006,5,23]]},"assertion":[{"value":"2006-05-23","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}