{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,29]],"date-time":"2025-09-29T11:50:26Z","timestamp":1759146626261,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":11,"publisher":"ACM","license":[{"start":{"date-parts":[[2009,2,22]],"date-time":"2009-02-22T00:00:00Z","timestamp":1235260800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2009,2,22]]},"DOI":"10.1145\/1508128.1508169","type":"proceedings-article","created":{"date-parts":[[2009,2,25]],"date-time":"2009-02-25T14:46:05Z","timestamp":1235573165000},"page":"249-252","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":6,"title":["A high performance fpga-based implementation of position specific iterated blast"],"prefix":"10.1145","author":[{"given":"Server","family":"Kasap","sequence":"first","affiliation":[{"name":"University of Edinburgh, Edinburgh, United Kingdom"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Khaled","family":"Benkrid","sequence":"additional","affiliation":[{"name":"University of Edinburgh, Edinburgh, United Kingdom"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Liu","sequence":"additional","affiliation":[{"name":"University of Edinburgh, Edinburgh, United Kingdom"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2009,2,22]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511790492","volume-title":"Biological Sequence Analysis: Probabilistic Models for Proteins and Nucleic Acids","author":"Durbin R.","year":"1998","unstructured":"Durbin , R. , Eddy , S. , Krogh , A. , and Mitchison , G. , \" Biological Sequence Analysis: Probabilistic Models for Proteins and Nucleic Acids \", Cambridge University Press , Cambridge UK , 1998 . Durbin, R., Eddy, S., Krogh, A., and Mitchison, G., \"Biological Sequence Analysis: Probabilistic Models for Proteins and Nucleic Acids\", Cambridge University Press, Cambridge UK, 1998."},{"key":"e_1_3_2_1_2_1","first-page":"649","article-title":"A New Methodology that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when a phylogeny is given","volume":"6","author":"Hein J.","year":"1989","unstructured":"Hein , J. \" A New Methodology that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when a phylogeny is given \". Journal of Molecular Biology , 6 , pp. 649 -- 668 , 1989 . Hein, J. \"A New Methodology that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when a phylogeny is given\". Journal of Molecular Biology, 6, pp.649--668, 1989.","journal-title":"Journal of Molecular Biology"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1109\/FPGA.1993.279464"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1109\/2.375174"},{"key":"e_1_3_2_1_5_1","unstructured":"TimeLogic Corporation \"Decypher Scalable High Performance Biocomputing Solutions\" http:\/\/www.timelogic.com.  TimeLogic Corporation \"Decypher Scalable High Performance Biocomputing Solutions\" http:\/\/www.timelogic.com."},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(05)80360-2"},{"key":"e_1_3_2_1_7_1","first-page":"3","article-title":"Design and Implementation of an FPGA-based Core for Gapped BLAST Sequence Alignment with the Two-Hit Method","volume":"16","author":"Kasap S.","year":"2008","unstructured":"Kasap , S. , Benkrid , K. , Liu , Y. , \" Design and Implementation of an FPGA-based Core for Gapped BLAST Sequence Alignment with the Two-Hit Method \", Engineering Letters , Vol. 16 , Issue: 3 , pp. 443--452, 2008 . Kasap, S., Benkrid, K., Liu, Y., \"Design and Implementation of an FPGA-based Core for Gapped BLAST Sequence Alignment with the Two-Hit Method\", Engineering Letters, Vol. 16, Issue: 3, pp. 443--452,2008.","journal-title":"Engineering Letters"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/25.17.3389"},{"key":"e_1_3_2_1_9_1","first-page":"15688","volume-title":"PNAS","volume":"100","author":"Yi-Kuo Yu C.","year":"2003","unstructured":"Yi-Kuo Yu , John C. Wootton , and Stephen F . Altschul, \"The compositional adjustment of amino acid substitution matrices \", PNAS , Vol. 100 , no 26, pp. 15688 -- 15693 , December , 2003 . Yi-Kuo Yu, John C. Wootton, and Stephen F. Altschul, \"The compositional adjustment of amino acid substitution matrices\", PNAS, Vol. 100, no 26, pp. 15688--15693, December, 2003."},{"key":"e_1_3_2_1_10_1","unstructured":"RCHTX FPGA Board Reference Manual Celoxica Plc http:\/\/www.celoxica.com.  RCHTX FPGA Board Reference Manual Celoxica Plc http:\/\/www.celoxica.com."},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"crossref","unstructured":"Boeckmann B. etal \"The SWISS-PROT protein knowledgebase and its supplement TrEMBL\" in 2003 Nucleic Acids Research Vol.31 pp. 365--370 2003.  Boeckmann B. et al. \"The SWISS-PROT protein knowledgebase and its supplement TrEMBL\" in 2003 Nucleic Acids Research Vol.31 pp. 365--370 2003.","DOI":"10.1093\/nar\/gkg095"}],"event":{"name":"FPGA '09: ACM\/SIGDA International Symposium on Field Programmable Gate Arrays","sponsor":["ACM Association for Computing Machinery","SIGDA ACM Special Interest Group on Design Automation"],"location":"Monterey California USA","acronym":"FPGA '09"},"container-title":["Proceedings of the ACM\/SIGDA international symposium on Field programmable gate arrays"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1508128.1508169","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/1508128.1508169","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T13:29:38Z","timestamp":1750253378000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1508128.1508169"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,2,22]]},"references-count":11,"alternative-id":["10.1145\/1508128.1508169","10.1145\/1508128"],"URL":"https:\/\/doi.org\/10.1145\/1508128.1508169","relation":{},"subject":[],"published":{"date-parts":[[2009,2,22]]},"assertion":[{"value":"2009-02-22","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}