{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T14:02:41Z","timestamp":1761919361474,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":19,"publisher":"ACM","license":[{"start":{"date-parts":[[2010,8,2]],"date-time":"2010-08-02T00:00:00Z","timestamp":1280707200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/501100003141","name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","doi-asserted-by":"publisher","award":["171595"],"award-info":[{"award-number":["171595"]}],"id":[{"id":"10.13039\/501100003141","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["9.41E+12"],"award-info":[{"award-number":["9.41E+12"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006751","name":"U.S. Army","doi-asserted-by":"publisher","award":["ARO 54723-CS"],"award-info":[{"award-number":["ARO 54723-CS"]}],"id":[{"id":"10.13039\/100006751","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2010,8,2]]},"DOI":"10.1145\/1854776.1854807","type":"proceedings-article","created":{"date-parts":[[2010,9,7]],"date-time":"2010-09-07T15:48:28Z","timestamp":1283874508000},"page":"204-213","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":14,"title":["Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing"],"prefix":"10.1145","author":[{"given":"Trlce","family":"Estrada","sequence":"first","affiliation":[{"name":"University of Delaware, Newark, DE"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Roger","family":"Armen","sequence":"additional","affiliation":[{"name":"University of Michigan Ann Arbor, Ann Arbor, MI"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michela","family":"Taufer","sequence":"additional","affiliation":[{"name":"University of Delaware, Newark, DE"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2010,8,2]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1109\/GRID.2004.14"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1021\/jm960588d"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btp623"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.1986.4767778"},{"key":"e_1_3_2_1_5_1","first-page":"3","volume-title":"In Proceedings of the 2nd East-West Database Workshop, Workshops in Computing","author":"Ceri S.","year":"1994","unstructured":"S. Ceri and R. Manthey . Chimera: A model and language for active dood systems . In In Proceedings of the 2nd East-West Database Workshop, Workshops in Computing , pages 3 -- 16 . Springer , 1994 . S. Ceri and R. Manthey. Chimera: A model and language for active dood systems. In In Proceedings of the 2nd East-West Database Workshop, Workshops in Computing, pages 3--16. Springer, 1994."},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20936"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.2001.5062"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.10378"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10822-007-9166-3"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/0263-7855(96)00018-5"},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10822-007-9151-x"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.10272"},{"key":"e_1_3_2_1_13_1","first-page":"309","volume-title":"Refining near-native protein-protein docking decoys by local resampling and energy minimization. PROTEINS: Structure, Function, and Bioinformatics","author":"Liang S.","year":"2008","unstructured":"S. Liang , G. Wang , and Y. Zhou . Refining near-native protein-protein docking decoys by local resampling and energy minimization. PROTEINS: Structure, Function, and Bioinformatics , pages 309 -- 316 , 2008 . S. Liang, G. Wang, and Y. Zhou. Refining near-native protein-protein docking decoys by local resampling and energy minimization. PROTEINS: Structure, Function, and Bioinformatics, pages 309--316, 2008."},{"key":"e_1_3_2_1_14_1","volume-title":"Identification of near-native structures by clustering protein docking conformations. PROTEINS: Structure, Function, and Bioinformatics, 68:187--194","author":"Lorenzen S.","year":"2007","unstructured":"S. Lorenzen and Y. Zhang . Identification of near-native structures by clustering protein docking conformations. PROTEINS: Structure, Function, and Bioinformatics, 68:187--194 , 2007 . S. Lorenzen and Y. Zhang. Identification of near-native structures by clustering protein docking conformations. PROTEINS: Structure, Function, and Bioinformatics, 68:187--194, 2007."},{"key":"e_1_3_2_1_15_1","unstructured":"LPDB - protein-ligand database. http:\/\/lpdb.scripps.edu\/.  LPDB - protein-ligand database. http:\/\/lpdb.scripps.edu\/."},{"key":"e_1_3_2_1_16_1","first-page":"4","article-title":"Protein docking by the underestimation of free energy funnels in the space of encounter complexes","author":"Shen Y.","year":"2008","unstructured":"Y. Shen , I. C. Paschalidis , P. Vakili , and S. Vajda . Protein docking by the underestimation of free energy funnels in the space of encounter complexes . PLOS Computational Biology , 4 , 2008 . Y. Shen, I. C. Paschalidis, P. Vakili, and S. Vajda. Protein docking by the underestimation of free energy funnels in the space of encounter complexes. PLOS Computational Biology, 4, 2008.","journal-title":"PLOS Computational Biology"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/6.1.1"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0969-2126(98)00113-0"},{"key":"e_1_3_2_1_19_1","first-page":"28","article-title":"The generalization of 'student's' problem","volume":"34","author":"Welch B. L.","year":"1947","unstructured":"B. L. Welch . The generalization of 'student's' problem . Biometrika , 34 : 28 -- 35 , 1947 . B. L. Welch. The generalization of 'student's' problem. Biometrika, 34:28--35, 1947.","journal-title":"Biometrika"}],"event":{"name":"BCB'10: ACM International Conference on Bioinformatics and Computational Biology","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Niagara Falls New York","acronym":"BCB'10"},"container-title":["Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1854776.1854807","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/1854776.1854807","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T12:08:12Z","timestamp":1750248492000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/1854776.1854807"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,8,2]]},"references-count":19,"alternative-id":["10.1145\/1854776.1854807","10.1145\/1854776"],"URL":"https:\/\/doi.org\/10.1145\/1854776.1854807","relation":{},"subject":[],"published":{"date-parts":[[2010,8,2]]},"assertion":[{"value":"2010-08-02","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}