{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:23:32Z","timestamp":1750307012457,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":55,"publisher":"ACM","license":[{"start":{"date-parts":[[2012,7,16]],"date-time":"2012-07-16T00:00:00Z","timestamp":1342396800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["K25GM090154","RR-022200"],"award-info":[{"award-number":["K25GM090154","RR-022200"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000152","name":"Division of Molecular and Cellular Biosciences","doi-asserted-by":"publisher","award":["OCI-1032742TG-MCB070040N"],"award-info":[{"award-number":["OCI-1032742TG-MCB070040N"]}],"id":[{"id":"10.13039\/100000152","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000105","name":"Office of Cyberinfrastructure","doi-asserted-by":"publisher","award":["OCI-1032742TG-MCB070040N"],"award-info":[{"award-number":["OCI-1032742TG-MCB070040N"]}],"id":[{"id":"10.13039\/100000105","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2012,7,16]]},"DOI":"10.1145\/2335755.2335839","type":"proceedings-article","created":{"date-parts":[[2012,7,26]],"date-time":"2012-07-26T14:41:14Z","timestamp":1343313674000},"page":"1-8","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":7,"title":["Ultrascan solution modeler"],"prefix":"10.1145","author":[{"given":"Emre","family":"Brookes","sequence":"first","affiliation":[{"name":"University of Texas Health Science Center at San Antonio, San Antonio, Texas"}]},{"given":"Raminderjeet","family":"Singh","sequence":"additional","affiliation":[{"name":"Indiana University, Bloomington, IN"}]},{"given":"Marlon","family":"Pierce","sequence":"additional","affiliation":[{"name":"Indiana University, Bloomington, IN"}]},{"given":"Suresh","family":"Marru","sequence":"additional","affiliation":[{"name":"Indiana University, Bloomington, IN"}]},{"given":"Borries","family":"Demeler","sequence":"additional","affiliation":[{"name":"University of Texas Health Science Center at San Antonio, San Antonio, Texas"}]},{"given":"Mattia","family":"Rocco","sequence":"additional","affiliation":[{"name":"Biopolimeri e Proteomica, IRCCS AOU San Martino-IST, Genova, Italy"}]}],"member":"320","published-online":{"date-parts":[[2012,7,16]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.2174\/138161209787002933"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"crossref","unstructured":"Goldman J. M. 2010. Chronic myeloid leukemia: an historical perspective Semin Hematol 47:302--311.  Goldman J. M. 2010. Chronic myeloid leukemia: an historical perspective Semin Hematol 47:302--311.","DOI":"10.1053\/j.seminhematol.2010.07.001"},{"volume-title":"D. J. et al., Eds","author":"Demeler B.","key":"e_1_3_2_1_3_1","unstructured":"Demeler , B. 2005. UltraScan: a comprehensive data analysis software package for analytical ultracentrifugation experiments. Modern AUC: Techniques and Methods. Scott , D. J. et al., Eds . Royal Society of Chemistry 210--9 Demeler, B. 2005. UltraScan: a comprehensive data analysis software package for analytical ultracentrifugation experiments. Modern AUC: Techniques and Methods. Scott, D. J. et al., Eds. Royal Society of Chemistry 210--9"},{"key":"e_1_3_2_1_4_1","unstructured":"UltraScan. http:\/www.ultrascan.uthscsa.edu  UltraScan. http:\/www.ultrascan.uthscsa.edu"},{"key":"e_1_3_2_1_5_1","unstructured":"Qt. http:\/\/qt.nokia.com  Qt. http:\/\/qt.nokia.com"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1145\/1188455.1188541"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"crossref","unstructured":"Brookes E. Cao W. Demeler B. 2009. A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape. Eur Biophys J  Brookes E. Cao W. Demeler B. 2009. A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape. Eur Biophys J","DOI":"10.1007\/s00249-009-0413-5"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1145\/1838574.1838579"},{"key":"e_1_3_2_1_9_1","first-page":"78","article-title":"Genetic algorithm optimization for obtaining accurate molecular weight distribution from sedimentation velocity experiments. AUC VIII","volume":"131","author":"Brookes E.","year":"2006","unstructured":"Brookes , E. and Demeler , B. 2006 . Genetic algorithm optimization for obtaining accurate molecular weight distribution from sedimentation velocity experiments. AUC VIII , Progr Colloid Polym Sci 131 : 78 -- 82 . Springer. Brookes, E. and Demeler, B. 2006. Genetic algorithm optimization for obtaining accurate molecular weight distribution from sedimentation velocity experiments. AUC VIII, Progr Colloid Polym Sci 131:78--82. Springer.","journal-title":"Progr Colloid Polym Sci"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1145\/1276958.1277035"},{"key":"e_1_3_2_1_11_1","unstructured":"Message passing interface standard. http:\/\/www.mcs.anl.gov\/research\/projects\/mpi\/  Message passing interface standard. http:\/\/www.mcs.anl.gov\/research\/projects\/mpi\/"},{"key":"e_1_3_2_1_12_1","unstructured":"High perf. comp. across texas. http:\/\/www.hipcat.net  High perf. comp. across texas. http:\/\/www.hipcat.net"},{"key":"e_1_3_2_1_13_1","unstructured":"Texas advanced comp. center. http:\/\/www.tacc.utexas.edu  Texas advanced comp. center. http:\/\/www.tacc.utexas.edu"},{"key":"e_1_3_2_1_14_1","unstructured":"Globus ws-gram 4. http:\/\/www.globus.org\/toolkit\/docs\/4.0\/execution\/wsgram\/  Globus ws-gram 4. http:\/\/www.globus.org\/toolkit\/docs\/4.0\/execution\/wsgram\/"},{"key":"e_1_3_2_1_15_1","unstructured":"The generic service toolkit. http:\/\/www.extreme.indiana.edu\/gfac\/  The generic service toolkit. http:\/\/www.extreme.indiana.edu\/gfac\/"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1145\/1838574.1838590"},{"key":"e_1_3_2_1_17_1","volume-title":"Difference between x-ray and nmr-derived bead models suggest a role for side chain flexibility in protein hydrodynamics. Structure 13, 723--734","author":"Rai N","year":"2005","unstructured":"Rai , N , Olution MOdeler) : Difference between x-ray and nmr-derived bead models suggest a role for side chain flexibility in protein hydrodynamics. Structure 13, 723--734 , 2005 Rai, N, et al., M. SOMO (SOlution MOdeler): Difference between x-ray and nmr-derived bead models suggest a role for side chain flexibility in protein hydrodynamics. Structure 13, 723--734, 2005"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"crossref","unstructured":"Brookes E. Demeler. B and Rocco M. 2010. The implementation of somo in the ultrascan analytical data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule. Eur Biophys J  Brookes E. Demeler. B and Rocco M. 2010. The implementation of somo in the ultrascan analytical data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule. Eur Biophys J","DOI":"10.1007\/s00249-009-0418-0"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1002\/mabi.200900474"},{"key":"e_1_3_2_1_20_1","unstructured":"Brookes E. US-SOMO. http:\/\/somo.uthscsa.edu  Brookes E. US-SOMO. http:\/\/somo.uthscsa.edu"},{"key":"e_1_3_2_1_21_1","volume-title":"Small angle x-ray scattering","author":"Glatter O.","year":"1982","unstructured":"Glatter , O. Kratky , O. 1982. Small angle x-ray scattering . 1982 . Academic Press ., London, ISBN-0-12-286280-5 Glatter, O. Kratky, O. 1982. Small angle x-ray scattering. 1982. Academic Press., London, ISBN-0-12-286280-5"},{"volume-title":"Methods of x-ray and neutron scattering in science","author":"Roe R. J.","key":"e_1_3_2_1_22_1","unstructured":"Roe , R. J. , 2000. Methods of x-ray and neutron scattering in science . Oxford University Press , New York . Roe, R. J., 2000. Methods of x-ray and neutron scattering in science. Oxford University Press, New York."},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"crossref","unstructured":"Dokholyan N. V. Buldyrev S. V. Stanley H. E. and Shaknovich E. I. 1998. Discrete molecular dynamic studies of the folding of a protein-like model. Folding &amp; Design 3:577--587  Dokholyan N. V. Buldyrev S. V. Stanley H. E. and Shaknovich E. I. 1998. Discrete molecular dynamic studies of the folding of a protein-like model. Folding &amp; Design 3:577--587","DOI":"10.1016\/S1359-0278(98)00072-8"},{"issue":"7","key":"e_1_3_2_1_24_1","first-page":"e85","article-title":"Emergence of protein fold families through rational design","volume":"2","author":"Ding F","year":"2006","unstructured":"Ding F , Dokholyan NV. 2006 . Emergence of protein fold families through rational design . Public Library of Science Comput Biol 2 ( 7 ): e85 Ding F, Dokholyan NV. 2006. Emergence of protein fold families through rational design. Public Library of Science Comput Biol 2(7):e85","journal-title":"Public Library of Science Comput Biol"},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevE.64.061401"},{"key":"e_1_3_2_1_26_1","unstructured":"Jmol. http:\/\/www.jmol.org\/  Jmol. http:\/\/www.jmol.org\/"},{"key":"e_1_3_2_1_27_1","unstructured":"Qt port of webkit. http:\/\/trac.webkit.org\/wiki\/QtWebKit  Qt port of webkit. http:\/\/trac.webkit.org\/wiki\/QtWebKit"},{"key":"e_1_3_2_1_28_1","unstructured":"Qt5. http:\/\/qt-project.org\/wiki\/Qt_5.0  Qt5. http:\/\/qt-project.org\/wiki\/Qt_5.0"},{"key":"e_1_3_2_1_29_1","unstructured":"The protein data bank http:\/\/www.rcsb.org  The protein data bank http:\/\/www.rcsb.org"},{"edition":"2","volume-title":"van Holde, K. E. 1985 Phys. Biochem.","key":"e_1_3_2_1_30_1","unstructured":"van Holde, K. E. 1985 Phys. Biochem. , 2 nd Ed. Prentice Hall . van Holde, K. E. 1985 Phys. Biochem., 2nd Ed. Prentice Hall."},{"key":"e_1_3_2_1_31_1","doi-asserted-by":"crossref","unstructured":"Svergun D. I. 1999. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys J 2879--86.  Svergun D. I. 1999. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys J 2879--86.","DOI":"10.1016\/S0006-3495(99)77443-6"},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0006-3495(01)76260-1"},{"key":"e_1_3_2_1_33_1","doi-asserted-by":"publisher","DOI":"10.1017\/S0033583500002080"},{"key":"e_1_3_2_1_34_1","doi-asserted-by":"publisher","DOI":"10.1002\/bip.1977.360160812"},{"key":"e_1_3_2_1_35_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.bpj.2011.06.046"},{"key":"e_1_3_2_1_36_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0006-3495(97)78681-8"},{"key":"e_1_3_2_1_37_1","doi-asserted-by":"publisher","DOI":"10.1021\/ct900269n"},{"key":"e_1_3_2_1_38_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jsb.2011.12.018"},{"key":"e_1_3_2_1_39_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0908526107"},{"key":"e_1_3_2_1_40_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1742-4658.2010.07724.x"},{"key":"e_1_3_2_1_41_1","doi-asserted-by":"publisher","DOI":"10.1103\/PhysRevE.49.5319"},{"key":"e_1_3_2_1_42_1","unstructured":"Zeno. http:\/\/www.stevens.edu\/zeno  Zeno. http:\/\/www.stevens.edu\/zeno"},{"key":"e_1_3_2_1_43_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkq461"},{"key":"e_1_3_2_1_44_1","unstructured":"FoXS webserver. http:\/\/modbase.compbio.ucsf.edu\/foxs\/about.html  FoXS webserver. http:\/\/modbase.compbio.ucsf.edu\/foxs\/about.html"},{"key":"e_1_3_2_1_45_1","doi-asserted-by":"publisher","DOI":"10.1107\/S0021889895007047"},{"key":"e_1_3_2_1_46_1","unstructured":"Jowitt Tom Scott David. Separate pers. comm.  Jowitt Tom Scott David. Separate pers. comm ."},{"key":"e_1_3_2_1_47_1","volume-title":"et al","author":"Pierce M.","year":"2009","unstructured":"Pierce , M. et al . 2009 . Open grid computing environments. Pierce, M. et al. 2009. Open grid computing environments."},{"key":"e_1_3_2_1_48_1","unstructured":"US-SOMO OGCE Bridge Clients Information. http:\/\/wiki.bcfuthscsa.edu\/ultrascan\/wiki\/OGCEIntegration  US-SOMO OGCE Bridge Clients Information. http:\/\/wiki.bcfuthscsa.edu\/ultrascan\/wiki\/OGCEIntegration"},{"key":"e_1_3_2_1_49_1","unstructured":"Rave Identity service. https:\/\/ogce.svn.sourceforge.net\/svnroot\/ogce\/rave-extensions\/rave-id-extension.  Rave Identity service. https:\/\/ogce.svn.sourceforge.net\/svnroot\/ogce\/rave-extensions\/rave-id-extension."},{"key":"e_1_3_2_1_50_1","unstructured":"Spring Security. http:\/\/static.springsource.org\/spring-security\/site\/index.html  Spring Security. http:\/\/static.springsource.org\/spring-security\/site\/index.html"},{"key":"e_1_3_2_1_51_1","unstructured":"Spring Framework http:\/\/www.springsource.org\/  Spring Framework http:\/\/www.springsource.org\/"},{"key":"e_1_3_2_1_52_1","doi-asserted-by":"publisher","DOI":"10.1145\/2110486.2110491"},{"key":"e_1_3_2_1_53_1","doi-asserted-by":"publisher","DOI":"10.1145\/2110486.2110490"},{"key":"e_1_3_2_1_54_1","unstructured":"Globus Online. http:\/\/www.globusonline.org  Globus Online. http:\/\/www.globusonline.org"},{"key":"e_1_3_2_1_55_1","unstructured":"Dropbox. http:\/\/www.dropbox.com  Dropbox. http:\/\/www.dropbox.com"}],"event":{"name":"XSEDE12: 2012 eXtreme Science and Engineering Discovery Environment 2012","acronym":"XSEDE12","location":"Chicago Illinois USA"},"container-title":["Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2335755.2335839","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/2335755.2335839","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T08:49:03Z","timestamp":1750236543000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2335755.2335839"}},"subtitle":["integrated hydrodynamic parameter and small angle scattering computation and fitting tools"],"short-title":[],"issued":{"date-parts":[[2012,7,16]]},"references-count":55,"alternative-id":["10.1145\/2335755.2335839","10.1145\/2335755"],"URL":"https:\/\/doi.org\/10.1145\/2335755.2335839","relation":{},"subject":[],"published":{"date-parts":[[2012,7,16]]},"assertion":[{"value":"2012-07-16","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}