{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T00:56:16Z","timestamp":1773276976636,"version":"3.50.1"},"publisher-location":"New York, NY, USA","reference-count":40,"publisher":"ACM","license":[{"start":{"date-parts":[[2012,10,7]],"date-time":"2012-10-07T00:00:00Z","timestamp":1349568000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2012,10,7]]},"DOI":"10.1145\/2382936.2382980","type":"proceedings-article","created":{"date-parts":[[2012,10,15]],"date-time":"2012-10-15T19:26:46Z","timestamp":1350329206000},"page":"345-352","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":12,"title":["Memory-based local search for simplified protein structure prediction"],"prefix":"10.1145","author":[{"given":"Swakkhar","family":"Shatabda","sequence":"first","affiliation":[{"name":"Griffith University"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M. A. Hakim","family":"Newton","sequence":"additional","affiliation":[{"name":"Griffith University"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Duc Nghia","family":"Pham","sequence":"additional","affiliation":[{"name":"Griffith University"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Abdul","family":"Sattar","sequence":"additional","affiliation":[{"name":"Griffith University"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2012,10,7]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1002\/spe.v37:13"},{"key":"e_1_3_2_1_2_1","volume-title":"Principles that govern the folding of protein chains. 181(4096):223--230","author":"Anfinsen C. B.","year":"1973","unstructured":"C. B. Anfinsen . Principles that govern the folding of protein chains. 181(4096):223--230 , 1973 . C. B. Anfinsen. Principles that govern the folding of protein chains. 181(4096):223--230, 1973."},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-24599-5_5"},{"key":"e_1_3_2_1_4_1","first-page":"92","volume-title":"Proceedings of the Pacific Symposium on Biocomputing","author":"Backofen R.","year":"2000","unstructured":"R. Backofen , S. Will , and P. Clote . Algorithmic approach to quantifying the hydrophobic force contribution in protein folding . In Proceedings of the Pacific Symposium on Biocomputing , pages 92 -- 103 , 2000 . R. Backofen, S. Will, and P. Clote. Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. In Proceedings of the Pacific Symposium on Biocomputing, pages 92--103, 2000."},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.1065659"},{"key":"e_1_3_2_1_6_1","volume-title":"The reactive tabu search. ORSA journal on computing, 6:126--126","author":"Battiti R.","year":"1994","unstructured":"R. Battiti , G. Tecchiolli , The reactive tabu search. ORSA journal on computing, 6:126--126 , 1994 . R. Battiti, G. Tecchiolli, et al. The reactive tabu search. ORSA journal on computing, 6:126--126, 1994."},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1145\/279069.279080"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.12921\/cmst.2004.10.01.07-19"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1145\/267521.267528"},{"key":"e_1_3_2_1_10_1","first-page":"241","volume-title":"Proceedings of the 23rd national conference on Artificial intelligence -","volume":"1","author":"Cebri\u00e1n M.","year":"2008","unstructured":"M. Cebri\u00e1n , I. Dot\u00fa , P. Van Hentenryck , and P. Clote . Protein structure prediction on the face centered cubic lattice by local search . In Proceedings of the 23rd national conference on Artificial intelligence - Volume 1 , AAAI'08, pages 241 -- 246 . AAAI Press , 2008 . M. Cebri\u00e1n, I. Dot\u00fa, P. Van Hentenryck, and P. Clote. Protein structure prediction on the face centered cubic lattice by local search. In Proceedings of the 23rd national conference on Artificial intelligence - Volume 1, AAAI'08, pages 241--246. AAAI Press, 2008."},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.281.5381.1267"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1145\/276698.276875"},{"key":"e_1_3_2_1_13_1","volume-title":"Technical report","author":"Decatur S. E.","year":"1996","unstructured":"S. E. Decatur . Protein folding in the generalized hydrophobic-polar model on the the triangular lattice. Technical report , 1996 . S. E. Decatur. Protein folding in the generalized hydrophobic-polar model on the the triangular lattice. Technical report, 1996."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-85958-1_6"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2011.41"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.1997.4.241"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-540-24840-8_18"},{"key":"e_1_3_2_1_18_1","first-page":"4138","volume-title":"IEEE Congress on Evolutionary Computation","author":"Hoque T.","year":"2007","unstructured":"T. Hoque , M. Chetty , and A. Sattar . Protein folding prediction in 3D FCC HP lattice model using genetic algorithm . In IEEE Congress on Evolutionary Computation , pages 4138 -- 4145 , 2007 . T. Hoque, M. Chetty, and A. Sattar. Protein folding prediction in 3D FCC HP lattice model using genetic algorithm. In IEEE Congress on Evolutionary Computation, pages 4138--4145, 2007."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1063\/1.1592796"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0004-3702(02)00221-7"},{"key":"e_1_3_2_1_21_1","volume-title":"A prediction of tertiary structures of peptide by the Monte Carlo simulated annealing method. 3(2):85--94","author":"Kawai H.","year":"1989","unstructured":"H. Kawai , T. Kikuchi , and Y. Okamoto . A prediction of tertiary structures of peptide by the Monte Carlo simulated annealing method. 3(2):85--94 , 1989 . H. Kawai, T. Kikuchi, and Y. Okamoto. A prediction of tertiary structures of peptide by the Monte Carlo simulated annealing method. 3(2):85--94, 1989."},{"key":"e_1_3_2_1_22_1","first-page":"41","volume-title":"Proceedings of the 18th National Conference on Artificial Intelligence","author":"Klau G. W.","year":"2002","unstructured":"G. W. Klau , N. Lesh , J. Marks , and M. Mitzenmacher . Human-guided tabu search . In Proceedings of the 18th National Conference on Artificial Intelligence , pages 41 -- 47 , 2002 . G. W. Klau, N. Lesh, J. Marks, and M. Mitzenmacher. Human-guided tabu search. In Proceedings of the 18th National Conference on Artificial Intelligence, pages 41--47, 2002."},{"key":"e_1_3_2_1_23_1","first-page":"41","volume-title":"Proceedings of the 18th National Conference on Artificial Intelligence","author":"Klau G. W.","year":"2002","unstructured":"G. W. Klau , N. Lesh , J. Marks , and M. Mitzenmacher . Human-guided tabu search . In Proceedings of the 18th National Conference on Artificial Intelligence , pages 41 -- 47 , 2002 . G. W. Klau, N. Lesh, J. Marks, and M. Mitzenmacher. Human-guided tabu search. In Proceedings of the 18th National Conference on Artificial Intelligence, pages 41--47, 2002."},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1021\/ma00200a030"},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1145\/640075.640099"},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.camwa.2008.10.061"},{"key":"e_1_3_2_1_27_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-9-230"},{"key":"e_1_3_2_1_28_1","first-page":"281","volume-title":"Proceedings of the National Conference on Artificial Intelligence","author":"Mazure B.","year":"1997","unstructured":"B. Mazure , L. Sais , and \u00c9. Gr\u00e9goire. Tabu search for sat . In Proceedings of the National Conference on Artificial Intelligence , pages 281 -- 285 , 1997 . B. Mazure, L. Sais, and \u00c9. Gr\u00e9goire. Tabu search for sat. In Proceedings of the National Conference on Artificial Intelligence, pages 281--285, 1997."},{"key":"e_1_3_2_1_29_1","doi-asserted-by":"publisher","DOI":"10.1021\/ma00145a039"},{"key":"e_1_3_2_1_30_1","first-page":"2004","article-title":"Constraint logic programming approach to protein structure prediction","volume":"5","author":"Pal\u00c3\u017a R. D.","year":"2004","unstructured":"R. D. Pal\u00c3\u017a , A. Dovier , and F. Fogolari . Constraint logic programming approach to protein structure prediction . BMC Bioinformatics , 5 : 2004 , 2004 . R. D. Pal\u00c3\u017a, A. Dovier, and F. Fogolari. Constraint logic programming approach to protein structure prediction. BMC Bioinformatics, 5:2004, 2004.","journal-title":"BMC Bioinformatics"},{"key":"e_1_3_2_1_31_1","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1097-0134(1999)37:3 <194::AID-PROT24>3.0.CO;2-F"},{"key":"e_1_3_2_1_32_1","volume-title":"Protein structure prediction","author":"Schonbrun J.","year":"2002","unstructured":"J. Schonbrun , W. Wedemeyer , and D. Baker . Protein structure prediction in 2002 . Current opinion in structural biology, 12(3):348--354, 2002. J. Schonbrun, W. Wedemeyer, and D. Baker. Protein structure prediction in 2002. Current opinion in structural biology, 12(3):348--354, 2002."},{"key":"e_1_3_2_1_33_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-6-30"},{"key":"e_1_3_2_1_34_1","doi-asserted-by":"publisher","DOI":"10.1109\/MSP.2007.914237"},{"key":"e_1_3_2_1_35_1","first-page":"138","volume-title":"Z. Cai, Z. Li, Z. Kang, & Y","author":"Ullah A. D.","year":"2009","unstructured":"A. D. Ullah , L. Kapsokalivas , M. Mann , and K. Steinh\u00f6fel . Protein Folding Simulation by Two-Stage Optimization . In Z. Cai, Z. Li, Z. Kang, & Y . Liu, editor, Computational Intelligence and Intelligent Systems , page 138 , 2009 . A. D. Ullah, L. Kapsokalivas, M. Mann, and K. Steinh\u00f6fel. Protein Folding Simulation by Two-Stage Optimization. In Z. Cai, Z. Li, Z. Kang, & Y. Liu, editor, Computational Intelligence and Intelligent Systems, page 138, 2009."},{"key":"e_1_3_2_1_36_1","volume-title":"A hybrid approach to protein folding problem integrating constraint programming with local search. BMC Bioinformatics, 11(S-1):39","author":"Ullah A. Z. M. D.","year":"2010","unstructured":"A. Z. M. D. Ullah and K. Steinh\u00f6fel . A hybrid approach to protein folding problem integrating constraint programming with local search. BMC Bioinformatics, 11(S-1):39 , 2010 . A. Z. M. D. Ullah and K. Steinh\u00f6fel. A hybrid approach to protein folding problem integrating constraint programming with local search. BMC Bioinformatics, 11(S-1):39, 2010."},{"key":"e_1_3_2_1_37_1","first-page":"581","volume-title":"Proceedings of the 5th International Conference on Genetic Algorithms","author":"Unger R.","year":"1993","unstructured":"R. Unger and J. Moult . A genetic algorithm for three dimensional protein folding simulations . In Proceedings of the 5th International Conference on Genetic Algorithms , pages 581 -- 588 , 1993 . R. Unger and J. Moult. A genetic algorithm for three dimensional protein folding simulations. In Proceedings of the 5th International Conference on Genetic Algorithms, pages 581--588, 1993."},{"key":"e_1_3_2_1_38_1","volume-title":"Constraint-based local search","author":"Van Hentenryck P.","year":"2009","unstructured":"P. Van Hentenryck and L. Michel . Constraint-based local search . The MIT Press , 2009 . P. Van Hentenryck and L. Michel. Constraint-based local search. The MIT Press, 2009."},{"key":"e_1_3_2_1_40_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.92.1.146"},{"key":"e_1_3_2_1_41_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.92.1.325"}],"event":{"name":"BCB' 12: ACM International Conference on Bioinformatics, Computational Biology and Biomedicine","location":"Orlando Florida","acronym":"BCB' 12","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"]},"container-title":["Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2382936.2382980","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/2382936.2382980","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T08:18:54Z","timestamp":1750234734000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2382936.2382980"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,10,7]]},"references-count":40,"alternative-id":["10.1145\/2382936.2382980","10.1145\/2382936"],"URL":"https:\/\/doi.org\/10.1145\/2382936.2382980","relation":{},"subject":[],"published":{"date-parts":[[2012,10,7]]},"assertion":[{"value":"2012-10-07","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}