{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,18]],"date-time":"2025-11-18T09:51:19Z","timestamp":1763459479610,"version":"3.45.0"},"publisher-location":"New York, NY, USA","reference-count":30,"publisher":"ACM","license":[{"start":{"date-parts":[[2017,10,2]],"date-time":"2017-10-02T00:00:00Z","timestamp":1506902400000},"content-version":"vor","delay-in-days":365,"URL":"http:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["IIS-1416259, CNS-1229081"],"award-info":[{"award-number":["IIS-1416259, CNS-1229081"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100002418","name":"Intel Corporation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100002418","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2016,10,2]]},"DOI":"10.1145\/2975167.2975211","type":"proceedings-article","created":{"date-parts":[[2016,11,29]],"date-time":"2016-11-29T11:28:42Z","timestamp":1480418922000},"page":"422-433","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":12,"title":["Kmerind"],"prefix":"10.1145","author":[{"given":"Tony","family":"Pan","sequence":"first","affiliation":[{"name":"School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA"}]},{"given":"Patrick","family":"Flick","sequence":"additional","affiliation":[{"name":"School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA"}]},{"given":"Chirag","family":"Jain","sequence":"additional","affiliation":[{"name":"School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA"}]},{"given":"Yongchao","family":"Liu","sequence":"additional","affiliation":[{"name":"School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA"}]},{"given":"Srinivas","family":"Aluru","sequence":"additional","affiliation":[{"name":"School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA"}]}],"member":"320","published-online":{"date-parts":[[2016,10,2]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1016\/S1570-8667(03)00065-0"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(05)80360-2"},{"key":"e_1_3_2_1_3_1","volume-title":"KAnalyze: A Fast Versatile Pipelined K-mer Toolkit. Bioinformatics, page btu","author":"Audano P.","year":"2014","unstructured":"P. Audano and F. Vannberg. KAnalyze: A Fast Versatile Pipelined K-mer Toolkit. Bioinformatics, page btu 152, Mar. 2014."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.208902"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1145\/362686.362692"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jalgor.2003.12.001"},{"key":"e_1_3_2_1_7_1","volume-title":"May","author":"Deorowicz S.","year":"2015","unstructured":"S. Deorowicz, M. Kokot, S. Grabowski, and A. Debudaj-Grabysz. KMC 2: fast and resource-frugal k-mer counting. Bioinformatics, 31(10):1569--1576, May 2015."},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.5555\/795666.796543"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.5555\/645676.663771"},{"key":"e_1_3_2_1_10_1","unstructured":"P. Flick. mxx. http:\/\/patflick.github.io\/mxx\/."},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1145\/2807591.2807609"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1145\/2807591.2807664"},{"key":"e_1_3_2_1_13_1","unstructured":"Google SparseHash. https:\/\/github.com\/sparsehash\/sparsehash."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-11-r116"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.229202"},{"key":"e_1_3_2_1_16_1","unstructured":"Kmernator. https:\/\/github.com\/JGI-Bioinformatics\/Kmernator."},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-9-517"},{"key":"e_1_3_2_1_18_1","volume-title":"May","author":"Li Y.","year":"2015","unstructured":"Y. Li and XifengYan. MSPKmerCounter: A Fast and Memory Efficient Approach for K-mer Counting. arXiv:1505.06550 {cs, q-bio}, May 2015. arXiv: 1505.06550."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts690"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr011"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-333"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature12211"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-242"},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt020"},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu132"},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.089532.108"},{"key":"e_1_3_2_1_27_1","first-page":"237","volume-title":"Bioinformatics Research and Applications, number 7875 in Lecture Notes in Computer Science","author":"V\u00e4lim\u00e4ki N.","year":"2013","unstructured":"N. V\u00e4lim\u00e4ki and E. Rivals. Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data. In Bioinformatics Research and Applications, number 7875 in Lecture Notes in Computer Science, pages 237--248. Springer, May 2013."},{"key":"e_1_3_2_1_28_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq468"},{"key":"e_1_3_2_1_29_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.074492.107"},{"key":"e_1_3_2_1_30_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0101271"}],"event":{"name":"BCB '16: ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Seattle WA USA","acronym":"BCB '16"},"container-title":["Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2975167.2975211","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/2975167.2975211","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/2975167.2975211","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,18]],"date-time":"2025-11-18T09:45:33Z","timestamp":1763459133000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/2975167.2975211"}},"subtitle":["A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems"],"short-title":[],"issued":{"date-parts":[[2016,10,2]]},"references-count":30,"alternative-id":["10.1145\/2975167.2975211","10.1145\/2975167"],"URL":"https:\/\/doi.org\/10.1145\/2975167.2975211","relation":{},"subject":[],"published":{"date-parts":[[2016,10,2]]},"assertion":[{"value":"2016-10-02","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}