{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:08:09Z","timestamp":1750306089909,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":21,"publisher":"ACM","license":[{"start":{"date-parts":[[2017,8,20]],"date-time":"2017-08-20T00:00:00Z","timestamp":1503187200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"name":"This research was supported by National Institutes of Health grant R01AI042792 and by the Carl M. Hansen Foundation."}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2017,8,20]]},"DOI":"10.1145\/3107411.3107416","type":"proceedings-article","created":{"date-parts":[[2017,8,24]],"date-time":"2017-08-24T11:58:11Z","timestamp":1503575891000},"page":"346-351","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":5,"title":["Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for\n            <i>Coxiella burnetii<\/i>"],"prefix":"10.1145","author":[{"given":"Zhila","family":"Esna Ashari","sequence":"first","affiliation":[{"name":"Washington State University, Pullman, WA, USA"}]},{"given":"Kelly A.","family":"Brayton","sequence":"additional","affiliation":[{"name":"Washington State University, Pullman, WA, USA"}]},{"given":"Shira L.","family":"Broschat","sequence":"additional","affiliation":[{"name":"Washington State University, Pullman, WA, USA"}]}],"member":"320","published-online":{"date-parts":[[2017,8,20]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.2217\/fmb.11.150"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01359-10"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkt718"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt554"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jtbi.2010.08.001"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"crossref","unstructured":"David Burstein Tal Zusman Elena Degtyar Ram Viner Gil Segal and Tal Pupko. 2009. Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach. PLoS Pathogens 5.  David Burstein Tal Zusman Elena Degtyar Ram Viner Gil Segal and Tal Pupko. 2009. Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach. PLoS Pathogens 5.","DOI":"10.1371\/journal.ppat.1000508"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"crossref","unstructured":"Y. Wang X. Wei H. Bao and S. Liu. 2014. Prediction of bacterial type IV secreted effectors by C-terminal features. BMC Genomics 15--50.  Y. Wang X. Wei H. Bao and S. Liu. 2014. Prediction of bacterial type IV secreted effectors by C-terminal features. BMC Genomics 15--50.","DOI":"10.1186\/1471-2164-15-50"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.01729-14"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1010485107"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"crossref","unstructured":"K. Carey H. Newton A. Luhrmann and C. R. Roy. 2011. The Coxiella burnetii Dot\/Icm System Delivers a Unique Repertoire of Type IV Effectors into Host Cells and Is Required for Intracellular Replication. PLoS Pathogen s 7.  K. Carey H. Newton A. Luhrmann and C. R. Roy. 2011. The Coxiella burnetii Dot\/Icm System Delivers a Unique Repertoire of Type IV Effectors into Host Cells and Is Required for Intracellular Replication. PLoS Pathogen s 7.","DOI":"10.1371\/journal.ppat.1002056"},{"key":"e_1_3_2_1_11_1","first-page":"1651","article-title":"Ankyrin Repeat Proteins Comprise a Diverse Family of Bacterial Type IV Effectors","volume":"320","author":"Pan Xiaoxiao","year":"2008","journal-title":"NIH Public Access"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1128\/JB.01656-08"},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"crossref","unstructured":"Svetlana Lockwood Daniel E. Voth Paul A. Beare Wendy C. Brown Robert A. Heinzen and Shira L. Broschat. 2011. Identification of Anaplasma marginale Type IV Secretion System Effector Proteins. PLoS ONE 6.  Svetlana Lockwood Daniel E. Voth Paul A. Beare Wendy C. Brown Robert A. Heinzen and Shira L. Broschat. 2011. Identification of Anaplasma marginale Type IV Secretion System Effector Proteins. PLoS ONE 6.","DOI":"10.1371\/journal.pone.0027724"},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(82)90515-0"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"crossref","unstructured":"David Burstein Francisco Amaro Tal Zusman Ziv Lifshitz Ofir Cohen Jack A Gilbert Tal Pupko Howard A Shuman and Gil Segal. 2016. Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires. Nature Genetics 48.  David Burstein Francisco Amaro Tal Zusman Ziv Lifshitz Ofir Cohen Jack A Gilbert Tal Pupko Howard A Shuman and Gil Segal. 2016. Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires. Nature Genetics 48.","DOI":"10.1038\/ng.3481"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq249"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000213"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"crossref","unstructured":"Jannick Dyrl\u00f8v Bendtsen Henrik Nielsen Gunnar von Heijne and S\u00f8ren Brunak 2004. Improved prediction of signal peptides: SignalP 3.0. Journal of Molecular Biology 340:783--795.  Jannick Dyrl\u00f8v Bendtsen Henrik Nielsen Gunnar von Heijne and S\u00f8ren Brunak 2004. Improved prediction of signal peptides: SignalP 3.0. Journal of Molecular Biology 340:783--795.","DOI":"10.1016\/j.jmb.2004.05.028"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1006\/jmbi.2000.4315"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btm475"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1084\/jem.20100771"}],"event":{"name":"BCB '17: 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Boston Massachusetts USA","acronym":"BCB '17"},"container-title":["Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3107416","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3107411.3107416","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T03:30:21Z","timestamp":1750217421000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3107416"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,8,20]]},"references-count":21,"alternative-id":["10.1145\/3107411.3107416","10.1145\/3107411"],"URL":"https:\/\/doi.org\/10.1145\/3107411.3107416","relation":{},"subject":[],"published":{"date-parts":[[2017,8,20]]},"assertion":[{"value":"2017-08-20","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}