{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,17]],"date-time":"2025-10-17T13:56:32Z","timestamp":1760709392893,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":17,"publisher":"ACM","license":[{"start":{"date-parts":[[2017,8,20]],"date-time":"2017-08-20T00:00:00Z","timestamp":1503187200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["CCF-1337158,CCF-1150013"],"award-info":[{"award-number":["CCF-1337158,CCF-1150013"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2017,8,20]]},"DOI":"10.1145\/3107411.3107482","type":"proceedings-article","created":{"date-parts":[[2017,8,24]],"date-time":"2017-08-24T11:58:11Z","timestamp":1503575891000},"page":"425-431","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":7,"title":["Scalable Genomic Assembly through Parallel\n            <i>de Bruijn<\/i>\n            Graph Construction for Multiple K-mers"],"prefix":"10.1145","author":[{"given":"Kanak","family":"Mahadik","sequence":"first","affiliation":[{"name":"Purdue University, West Lafayette, IN, USA"}]},{"given":"Christopher","family":"Wright","sequence":"additional","affiliation":[{"name":"Purdue University, West Lafayette, IN, USA"}]},{"given":"Milind","family":"Kulkarni","sequence":"additional","affiliation":[{"name":"Purdue University, West Lafayette, IN, USA"}]},{"given":"Saurabh","family":"Bagchi","sequence":"additional","affiliation":[{"name":"Purdue University, West Lafayette, IN, USA"}]},{"given":"Somali","family":"Chaterji","sequence":"additional","affiliation":[{"name":"Purdue Unviersity, West Lafayatte, IN, USA"}]}],"member":"320","published-online":{"date-parts":[[2017,8,20]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2009.0238"},{"key":"e_1_3_2_1_3_1","volume-title":"How to apply de Bruijn graphs to genome assembly. Nature biotechnology","author":"Compeau Phillip EC","year":"2011","unstructured":"Phillip EC Compeau , Pavel A Pevzner , and Glenn Tesler . 2011. How to apply de Bruijn graphs to genome assembly. Nature biotechnology , Vol. 29 , 11 ( 2011 ), 987--991. Phillip EC Compeau, Pavel A Pevzner, and Glenn Tesler. 2011. How to apply de Bruijn graphs to genome assembly. Nature biotechnology, Vol. 29, 11 (2011), 987--991."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1145\/2807591.2807664"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1017351108"},{"key":"e_1_3_2_1_6_1","volume-title":"Parallelized short read assembly of large genomes using de Bruijn graphs. BMC bioinformatics","author":"Liu Yongchao","year":"2011","unstructured":"Yongchao Liu , Bertil Schmidt , and Douglas L Maskell . 2011. Parallelized short read assembly of large genomes using de Bruijn graphs. BMC bioinformatics , Vol. 12 , 1 ( 2011 ), 354. Yongchao Liu, Bertil Schmidt, and Douglas L Maskell. 2011. Parallelized short read assembly of large genomes using de Bruijn graphs. BMC bioinformatics, Vol. 12, 1 (2011), 354."},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1186\/2047-217X-1-18"},{"key":"e_1_3_2_1_8_1","volume-title":"MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic acids research","author":"Namiki Toshiaki","year":"2012","unstructured":"Toshiaki Namiki , Tsuyoshi Hachiya , Hideaki Tanaka , and Yasubumi Sakakibara 2012. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic acids research Vol. 40 , 20 ( 2012 ), e155--e155. Toshiaki Namiki, Tsuyoshi Hachiya, Hideaki Tanaka, and Yasubumi Sakakibara 2012. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic acids research Vol. 40, 20 (2012), e155--e155."},{"key":"e_1_3_2_1_9_1","unstructured":"University of California at San Diego. 2011. Single cell data sets. http:\/\/bix.ucsd.edu\/projects\/singlecell\/nbt_data.html. (2011).  University of California at San Diego. 2011. Single cell data sets. http:\/\/bix.ucsd.edu\/projects\/singlecell\/nbt_data.html. (2011)."},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-12683-3_28"},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btr216"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bts174"},{"key":"e_1_3_2_1_13_1","volume-title":"Critical Assessment of Metagenome Interpretation- a benchmark of computational metagenomics software. bioRxiv","author":"Sczyrba Alexander","year":"2017","unstructured":"Alexander Sczyrba , Peter Hofmann , Peter Belmann , David Koslicki , Stefan Janssen , Johannes Droege , Ivan Gregor , Stephan Majda , Jessika Fiedler , Eik Dahms , and others 2017. Critical Assessment of Metagenome Interpretation- a benchmark of computational metagenomics software. bioRxiv ( 2017 ), 099127. Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Droege, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, and others 2017. Critical Assessment of Metagenome Interpretation- a benchmark of computational metagenomics software. bioRxiv (2017), 099127."},{"key":"e_1_3_2_1_14_1","volume-title":"Efficient de novo assembly of large genomes using compressed data structures. Genome research","author":"Simpson Jared T","year":"2012","unstructured":"Jared T Simpson and Richard Durbin 2012. Efficient de novo assembly of large genomes using compressed data structures. Genome research , Vol. 22 , 3 ( 2012 ), 549--556. Jared T Simpson and Richard Durbin 2012. Efficient de novo assembly of large genomes using compressed data structures. Genome research, Vol. 22, 3 (2012), 549--556."},{"key":"e_1_3_2_1_15_1","volume-title":"Steven JM Jones, and Inancc Birol","author":"Simpson Jared T","year":"2009","unstructured":"Jared T Simpson , Kim Wong , Shaun D Jackman , Jacqueline E Schein , Steven JM Jones, and Inancc Birol 2009 . ABySS: a parallel assembler for short read sequence data. Genome research, Vol. 19 , 6 (2009), 1117--1123. Jared T Simpson, Kim Wong, Shaun D Jackman, Jacqueline E Schein, Steven JM Jones, and Inancc Birol 2009. ABySS: a parallel assembler for short read sequence data. Genome research, Vol. 19, 6 (2009), 1117--1123."},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002195"},{"key":"e_1_3_2_1_17_1","volume-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research","author":"Zerbino Daniel R","year":"2008","unstructured":"Daniel R Zerbino and Ewan Birney 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research , Vol. 18 , 5 ( 2008 ), 821--829. Daniel R Zerbino and Ewan Birney 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research, Vol. 18, 5 (2008), 821--829."}],"event":{"name":"BCB '17: 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Boston Massachusetts USA","acronym":"BCB '17"},"container-title":["Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3107482","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3107411.3107482","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3107411.3107482","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T03:30:21Z","timestamp":1750217421000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3107482"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,8,20]]},"references-count":17,"alternative-id":["10.1145\/3107411.3107482","10.1145\/3107411"],"URL":"https:\/\/doi.org\/10.1145\/3107411.3107482","relation":{},"subject":[],"published":{"date-parts":[[2017,8,20]]},"assertion":[{"value":"2017-08-20","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}