{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:08:13Z","timestamp":1750306093229,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":27,"publisher":"ACM","license":[{"start":{"date-parts":[[2017,8,20]],"date-time":"2017-08-20T00:00:00Z","timestamp":1503187200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["CCF 1320273, CCF 1618427"],"award-info":[{"award-number":["CCF 1320273, CCF 1618427"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2017,8,20]]},"DOI":"10.1145\/3107411.3110417","type":"proceedings-article","created":{"date-parts":[[2017,8,24]],"date-time":"2017-08-24T11:58:11Z","timestamp":1503575891000},"page":"764-765","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids"],"prefix":"10.1145","author":[{"given":"Abolfazl","family":"Hashemi","sequence":"first","affiliation":[{"name":"University of Texas at Austin, Austin, TX, USA"}]},{"given":"Banghua","family":"Zhu","sequence":"additional","affiliation":[{"name":"Tsinghua University, Beijing, China"}]},{"given":"Haris","family":"Vikalo","sequence":"additional","affiliation":[{"name":"University of Texas at Austin, Austin, TX, USA"}]}],"member":"320","published-online":{"date-parts":[[2017,8,20]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0084"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btn298"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"crossref","unstructured":"V. Bansal A.L. Halpern N. Axelrod and V. Bafna. 2008. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome research Vol. 18 8 (2008) 1336--1346.  V. Bansal A.L. Halpern N. Axelrod and V. Bafna. 2008. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome research Vol. 18 8 (2008) 1336--1346.","DOI":"10.1101\/gr.077065.108"},{"key":"e_1_3_2_1_4_1","volume-title":"HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data. PLoS Comput. Biol.","volume":"10","author":"Berger E.","year":"2014","unstructured":"E. Berger , D. Yorukoglu , J. Peng , and B. Berger . 2014 . HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data. PLoS Comput. Biol. , Vol. 10 , 3 ( 2014 ). E. Berger, D. Yorukoglu, J. Peng, and B. Berger. 2014. HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data. PLoS Comput. Biol., Vol. 10, 3 (2014)."},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2015.0220"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10208-009-9045-5"},{"key":"e_1_3_2_1_7_1","volume-title":"Exact algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics","author":"Chen Z.","year":"2013","unstructured":"Z. Chen , F. Deng , and L. Wang 2013. Exact algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics ( 2013 ), btt349. Z. Chen, F. Deng, and L. Wang 2013. Exact algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics (2013), btt349."},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1007\/11557067_11"},{"key":"e_1_3_2_1_9_1","volume-title":"The role of haplotypes in candidate gene studies. Genetic epidemiology","author":"Clark A.G.","year":"2004","unstructured":"A.G. Clark . 2004. The role of haplotypes in candidate gene studies. Genetic epidemiology , Vol. 27 , 4 ( 2004 ), 321--333. A.G. Clark. 2004. The role of haplotypes in candidate gene studies. Genetic epidemiology, Vol. 27, 4 (2004), 321--333."},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-015-1408-5"},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1109\/TMBMC.2016.2640306"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"crossref","unstructured":"J. Duitama G.K. McEwen T. Huebsch S. Palczewski S. Schulz and etal 2011. Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques. Nucleic acids research (2011) gkr1042.  J. Duitama G.K. McEwen T. Huebsch S. Palczewski S. Schulz and et al. 2011. Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques. Nucleic acids research (2011) gkr1042.","DOI":"10.1093\/nar\/gkr1042"},{"key":"e_1_3_2_1_13_1","volume-title":"Nature","volume":"426","author":"Gibbs R.A.","year":"2003","unstructured":"R.A. Gibbs , J.W. Belmont , P. Hardenbol , T.D. Willis , F. Yu, and et al. 2003. The international HapMap project . Nature , Vol. 426 , 6968 ( 2003 ), 789--796. R.A. Gibbs, J.W. Belmont, P. Hardenbol, T.D. Willis, F. Yu, and et al. 2003. The international HapMap project. Nature, Vol. 426, 6968 (2003), 789--796."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btq215"},{"key":"e_1_3_2_1_15_1","volume-title":"Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome research","author":"Kim J.H.","year":"2007","unstructured":"J.H. Kim , M.S. Waterman , and L.M. Li 2007. Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome research , Vol. 17 , 7 ( 2007 ), 1101--1110. J.H. Kim, M.S. Waterman, and L.M. Li 2007. Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome research, Vol. 17, 7 (2007), 1101--1110."},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btu484"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"crossref","unstructured":"S. Levy G. Sutton P.C. Ng L. Feuk A.L. Halpern and etal 2007. The diploid genome sequence of an individual human. PLoS biology Vol. 5 10 (2007) e254.  S. Levy G. Sutton P.C. Ng L. Feuk A.L. Halpern and et al. 2007. The diploid genome sequence of an individual human. PLoS biology Vol. 5 10 (2007) e254.","DOI":"10.1371\/journal.pbio.0050254"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"crossref","unstructured":"E. Motazedi R. Finkers C. Maliepaard and D. de Ridder. 2017. Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study. Brief. Bioinform. (2017) bbw126.  E. Motazedi R. Finkers C. Maliepaard and D. de Ridder. 2017. Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study. Brief. Bioinform. (2017) bbw126.","DOI":"10.1093\/bib\/bbw126"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2014.0157"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"crossref","unstructured":"Y. Pirola S. Zaccaria R. Dondi G.W. Klau N. Pisanti and P. Bonizzoni. 2015. HapCol: accurate and memory-efficient haplotype assembly from long reads. Bioinformatics (2015) btv495.  Y. Pirola S. Zaccaria R. Dondi G.W. Klau N. Pisanti and P. Bonizzoni. 2015. HapCol: accurate and memory-efficient haplotype assembly from long reads. Bioinformatics (2015) btv495.","DOI":"10.1093\/bioinformatics\/btv495"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2015.2462367"},{"key":"e_1_3_2_1_22_1","volume-title":"Doubling down on genomes: polyploidy and crop plants. American J. botany","author":"Renny-Byfield S.","year":"2014","unstructured":"S. Renny-Byfield and J.F. Wendel 2014. Doubling down on genomes: polyploidy and crop plants. American J. botany , Vol. 101 , 10 ( 2014 ), 1711--1725. S. Renny-Byfield and J.F. Wendel 2014. Doubling down on genomes: polyploidy and crop plants. American J. botany, Vol. 101, 10 (2014), 1711--1725."},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature01140"},{"key":"e_1_3_2_1_24_1","first-page":"23","article-title":"Theory and algorithms for the haplotype assembly problem. Communications in Info","volume":"10","author":"Schwartz R.","year":"2010","unstructured":"R. Schwartz and 2010 . Theory and algorithms for the haplotype assembly problem. Communications in Info . & Sys. Vol. 10 , 1 (2010), 23 -- 38 . R. Schwartz and et al. 2010. Theory and algorithms for the haplotype assembly problem. Communications in Info. & Sys. Vol. 10, 1 (2010), 23--38.","journal-title":"& Sys."},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1109\/TIT.2016.2598574"},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bti352"},{"key":"e_1_3_2_1_27_1","doi-asserted-by":"crossref","unstructured":"M. Xie Q. Wu J. Wang and T. Jiang. 2016. H-PoP and H-PoPG: Heuristic partitioning algorithms for single individual haplotyping of polyploids. Bioinformatics (2016) btw537. endthebibliography  M. Xie Q. Wu J. Wang and T. Jiang. 2016. H-PoP and H-PoPG: Heuristic partitioning algorithms for single individual haplotyping of polyploids. Bioinformatics (2016) btw537. endthebibliography","DOI":"10.1093\/bioinformatics\/btw537"}],"event":{"name":"BCB '17: 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Boston Massachusetts USA","acronym":"BCB '17"},"container-title":["Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3110417","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3107411.3110417","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3107411.3110417","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T03:30:25Z","timestamp":1750217425000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3107411.3110417"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,8,20]]},"references-count":27,"alternative-id":["10.1145\/3107411.3110417","10.1145\/3107411"],"URL":"https:\/\/doi.org\/10.1145\/3107411.3110417","relation":{},"subject":[],"published":{"date-parts":[[2017,8,20]]},"assertion":[{"value":"2017-08-20","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}