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Four different methodologies, ranging from a traditional \u201cjust assign some intermediate milestones\u201d to other more Agile methodologies, were first compared via a controlled experiment. The results of this initial experiment showed that the project methodology used made a significant difference in student outcomes. Surprisingly, the Agile Kanban approach was found to be much more effective than the Agile Scrum methodology. Based on these initial results, in the second semester, we focused on use of the Kanban methodology. The findings in the second, more qualitative phase, confirmed the methodology's usefulness and scalability. A key issue when using the scrum methodology was that the students had a very difficult time estimating what could be completed in each of their two-week sprints. The Kanban board, which visually shows and limits work-in-progress, was found to be an effective way for students to communicate with each other as well as with their instructor. In addition, Agile Kanban also streamlined the work required for instructors to efficiently provide guidance to student teams and to understand each team's status. 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