{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T23:40:11Z","timestamp":1750203611213,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":27,"publisher":"ACM","license":[{"start":{"date-parts":[[2019,9,4]],"date-time":"2019-09-04T00:00:00Z","timestamp":1567555200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1763233"],"award-info":[{"award-number":["1763233"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006990","name":"Thomas F. and Kate Miller Jeffress Memorial Trust","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100006990","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2019,9,4]]},"DOI":"10.1145\/3307339.3343861","type":"proceedings-article","created":{"date-parts":[[2019,9,9]],"date-time":"2019-09-09T12:20:31Z","timestamp":1568031631000},"page":"562-567","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["Decoy Ensemble Reduction in Template-free Protein Structure Prediction"],"prefix":"10.1145","author":[{"given":"Ahmed Bin","family":"Zaman","sequence":"first","affiliation":[{"name":"George Mason University, Fairfax, VA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Parastoo","family":"Kamranfar","sequence":"additional","affiliation":[{"name":"George Mason University, Fairfax, VA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carlotta","family":"Domeniconi","sequence":"additional","affiliation":[{"name":"George Mason University, Fairfax, VA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amarda","family":"Shehu","sequence":"additional","affiliation":[{"name":"George Mason University, Fairfax, VA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2019,9,4]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.3390\/computation6020039"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1002\/jcc.20681"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"crossref","unstructured":"H. M. Berman K. Henrick and H. Nakamura. 2003. Announcing the worldwide Protein Data Bank. Vol. 10 12 (2003) 980--980.  H. M. Berman K. Henrick and H. Nakamura. 2003. Announcing the worldwide Protein Data Bank. Vol. 10 12 (2003) 980--980.","DOI":"10.1038\/nsb1203-980"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.tibtech.2011.01.001"},{"key":"e_1_3_2_1_5_1","volume-title":"Science","volume":"320","author":"Boehr D. D.","year":"2008","unstructured":"D. D. Boehr and P. E. Wright . 2008. How do proteins interact ? Science , Vol. 320 , 5882 ( 2008 ), 1429--1430. D. D. Boehr and P. E. Wright. 2008. How do proteins interact? Science , Vol. 320, 5882 (2008), 1429--1430."},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0020044"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1109\/TPAMI.1979.4766909"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1007\/s10618-006-0060-8"},{"key":"e_1_3_2_1_9_1","first-page":"345","article-title":"Assessment of model accuracy estimations in CASP12 . Proteins: Struct, Funct","volume":"86","author":"Kryshtafovych A.","year":"2017","unstructured":"A. Kryshtafovych , B. Monastyrskyy , K. Fidelis , T. Schwede , and A. Tramontano . 2017 . Assessment of model accuracy estimations in CASP12 . Proteins: Struct, Funct , Bioinf , Vol. 86 , Suppl 1 (2017), 345 -- 360 . A. Kryshtafovych, B. Monastyrskyy, K. Fidelis, T. Schwede, and A. Tramontano. 2017. Assessment of model accuracy estimations in CASP12 . Proteins: Struct, Funct, Bioinf , Vol. 86, Suppl 1 (2017), 345--360.","journal-title":"Bioinf"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/B978-0-12-381270-4.00019-6"},{"key":"e_1_3_2_1_11_1","first-page":"3","article-title":"Ab initio protein structure prediction. From Protein Structure to Function with Bioinformatics 2 ed.), , D. J. Rigden (Ed.). Springer London","volume":"1","author":"Lee J.","year":"2017","unstructured":"J. Lee , P. Freddolino , and Y. Zhang . 2017 . Ab initio protein structure prediction. From Protein Structure to Function with Bioinformatics 2 ed.), , D. J. Rigden (Ed.). Springer London , Chapter 1 , 3 -- 35 . J. Lee, P. Freddolino, and Y. Zhang. 2017. Ab initio protein structure prediction. From Protein Structure to Function with Bioinformatics 2 ed.), , D. J. Rigden (Ed.). Springer London, Chapter 1, 3--35.","journal-title":"Chapter"},{"key":"e_1_3_2_1_12_1","volume-title":"Association for Women in Mathematics","volume":"17","author":"Mani P.","unstructured":"P. Mani , M. Vazquez , J. R. Metcalf-Burton , C. Domeniconi , H. Fairbanks , G. Bal , E. Beer , and S. Tari . 2019. The Hubness Phenomenon in High-Dimensional Spaces. Research in Data Sciences , , Gasparovic E. and Domeniconi C. (Eds.) . Association for Women in Mathematics , Vol. 17 . Springer, Cham, Switzerland, 15--45. P. Mani, M. Vazquez, J. R. Metcalf-Burton, C. Domeniconi, H. Fairbanks, G. Bal, E. Beer, and S. Tari. 2019. The Hubness Phenomenon in High-Dimensional Spaces. Research in Data Sciences , , Gasparovic E. and Domeniconi C. (Eds.). Association for Women in Mathematics, Vol. 17. Springer, Cham, Switzerland, 15--45."},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004619"},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1107\/S0567739472001627"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2013.29"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1145\/2463372.2463407"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1145\/2506583.2506590"},{"volume-title":"Multi-Objective Optimization Techniques for Conformational Sampling in Template-Free Protein Structure Prediction. In Intl Conf on Bioinf and Comp Biol (BICoB)","author":"Olson B.","key":"e_1_3_2_1_18_1","unstructured":"B. Olson and A. Shehu . 2014 . Multi-Objective Optimization Techniques for Conformational Sampling in Template-Free Protein Structure Prediction. In Intl Conf on Bioinf and Comp Biol (BICoB) . Las Vegas, NV, 143--148. B. Olson and A. Shehu. 2014. Multi-Objective Optimization Techniques for Conformational Sampling in Template-Free Protein Structure Prediction. In Intl Conf on Bioinf and Comp Biol (BICoB) . Las Vegas, NV, 143--148."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-018-5024-z"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"crossref","unstructured":"W. Qiao T. Maximova X. Fang E. Plaku and A. Shehu. 2017. Reconstructing and Mining Protein Energy Landscape to Understand Disease. IEEE Kansas City MO.  W. Qiao T. Maximova X. Fang E. Plaku and A. Shehu. 2017. Reconstructing and Mining Protein Energy Landscape to Understand Disease. IEEE Kansas City MO.","DOI":"10.1109\/BIBM.2017.8217619"},{"volume-title":"A Review of Evolutionary Algorithms for Computing Functional Conformations of Protein Molecules. Computer-Aided Drug Discovery","author":"Shehu A.","key":"e_1_3_2_1_21_1","unstructured":"A. Shehu . 2015. A Review of Evolutionary Algorithms for Computing Functional Conformations of Protein Molecules. Computer-Aided Drug Discovery , , W. Zhang (Ed.). Springer Verlag . A. Shehu. 2015. A Review of Evolutionary Algorithms for Computing Functional Conformations of Protein Molecules. Computer-Aided Drug Discovery , , W. Zhang (Ed.). Springer Verlag."},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"crossref","unstructured":"M. Steinbach L. Ert\u00f6z and V. Kumar. 2004. The Challenges of Clustering High Dimensional Data. New Directions in Statistics Physics L. T. Wille (Ed.). Springer Berlin Heidelberg 273--309.  M. Steinbach L. Ert\u00f6z and V. Kumar. 2004. The Challenges of Clustering High Dimensional Data. New Directions in Statistics Physics L. T. Wille (Ed.). Springer Berlin Heidelberg 273--309.","DOI":"10.1007\/978-3-662-08968-2_16"},{"key":"e_1_3_2_1_23_1","first-page":"1715","article-title":"Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field. Proteins: Struct, Funct","volume":"80","author":"Xu D.","year":"2012","unstructured":"D. Xu and Y. Zhang . 2012 . Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field. Proteins: Struct, Funct , Bioinf , Vol. 80 , 7 (2012), 1715 -- 1735 . D. Xu and Y. Zhang. 2012. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field. Proteins: Struct, Funct, Bioinf , Vol. 80, 7 (2012), 1715--1735.","journal-title":"Bioinf"},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1145\/3321707.3321777"},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-019-2794-5"},{"key":"e_1_3_2_1_26_1","unstructured":"G. Zhang L. Ma X. Wang and X. Zhou. 2018. Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction. IEEE\/ACM Trans Comput Biol and Bioinf (2018).  G. Zhang L. Ma X. Wang and X. Zhou. 2018. Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction. IEEE\/ACM Trans Comput Biol and Bioinf (2018)."},{"key":"e_1_3_2_1_27_1","doi-asserted-by":"publisher","DOI":"10.1109\/TCBB.2016.2566617"}],"event":{"name":"BCB '19: 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"],"location":"Niagara Falls NY USA","acronym":"BCB '19"},"container-title":["Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3307339.3343861","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3307339.3343861","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3307339.3343861","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T23:13:36Z","timestamp":1750202016000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3307339.3343861"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,9,4]]},"references-count":27,"alternative-id":["10.1145\/3307339.3343861","10.1145\/3307339"],"URL":"https:\/\/doi.org\/10.1145\/3307339.3343861","relation":{},"subject":[],"published":{"date-parts":[[2019,9,4]]},"assertion":[{"value":"2019-09-04","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}