{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T04:17:37Z","timestamp":1750220257164,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":21,"publisher":"ACM","license":[{"start":{"date-parts":[[2022,7,8]],"date-time":"2022-07-08T00:00:00Z","timestamp":1657238400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1931439,1931575, 1557349,1636402"],"award-info":[{"award-number":["1931439,1931575, 1557349,1636402"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2022,7,8]]},"DOI":"10.1145\/3491418.3530291","type":"proceedings-article","created":{"date-parts":[[2022,7,8]],"date-time":"2022-07-08T16:36:23Z","timestamp":1657298183000},"page":"1-7","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["The C-M\u0100IKI Gateway: A Modern Science Platform for Analyzing Microbiome Data"],"prefix":"10.1145","author":[{"given":"Sean","family":"Cleveland","sequence":"first","affiliation":[{"name":"Information Technology Services - Cyberinfrastructure, University of Hawaii, USA"}]},{"given":"Cedric","family":"Arisdakessian","sequence":"additional","affiliation":[{"name":"Information and Computer Science, University of Hawaii -Manoa, USA"}]},{"given":"Craig","family":"Nelson","sequence":"additional","affiliation":[{"name":"Hawaii Institute of Marine Biology, University of Hawaii - Manoa, USA"}]},{"given":"Mahdi","family":"Belcaid","sequence":"additional","affiliation":[{"name":"Information and Computer Sciences, University of Hawaii - Manoa, USA"}]},{"given":"Kiana","family":"Frank","sequence":"additional","affiliation":[{"name":"Pacific Biosciences Research Center,, University of Hawaii - Manoa, USA"}]},{"given":"Gwen","family":"Jacobs","sequence":"additional","affiliation":[{"name":"Information Technology Services - Cyberinfrastructure, University of Hawaii, USA"}]}],"member":"320","published-online":{"date-parts":[[2022,7,8]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1109\/SC.2005.72"},{"key":"e_1_3_2_1_2_1","volume-title":"PEARC20: Proceedings of the Practice and Experience of Advanced Research Computing. PEARC.","author":"Arisdakessian Cedric","year":"2020","unstructured":"Cedric Arisdakessian , Sean\u00a0 B Cleveland , and Mahdi Belcaid . 2020 . MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data . In PEARC20: Proceedings of the Practice and Experience of Advanced Research Computing. PEARC. Cedric Arisdakessian, Sean\u00a0B Cleveland, and Mahdi Belcaid. 2020. MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data. In PEARC20: Proceedings of the Practice and Experience of Advanced Research Computing. PEARC."},{"key":"e_1_3_2_1_3_1","volume-title":"Nature News (may","author":"Baker Monya","year":"2016","unstructured":"Monya Baker . 2016. 1,500 scientists lift the lid on reproducibility. Nature News (may 2016 ). Monya Baker. 2016. 1,500 scientists lift the lid on reproducibility. Nature News (may 2016)."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.future.2018.12.026"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.3780"},{"key":"e_1_3_2_1_6_1","first-page":"20","article-title":"Characterization of Leptazolines A\u2013D, Polar Oxazolines from the Cyanobacterium Leptolyngbya sp., Reveals a Glitch with the \u201cWilloughby\u2013Hoye","volume":"21","author":"Bhandari\u00a0Neupane Jayanti","year":"2019","unstructured":"Jayanti Bhandari\u00a0Neupane , Ram\u00a0 P. Neupane , Yuheng Luo , Wesley\u00a0 Y. Yoshida , Rui Sun , and Philip\u00a0 G. Williams . 2019 . Characterization of Leptazolines A\u2013D, Polar Oxazolines from the Cyanobacterium Leptolyngbya sp., Reveals a Glitch with the \u201cWilloughby\u2013Hoye \u201d Scripts for Calculating NMR Chemical Shifts. Organic Letters 21 , 20 (Oct. 2019), 8449\u20138453. https:\/\/doi.org\/10.1021\/acs.orglett.9b03216 10.1021\/acs.orglett.9b03216 Jayanti Bhandari\u00a0Neupane, Ram\u00a0P. Neupane, Yuheng Luo, Wesley\u00a0Y. Yoshida, Rui Sun, and Philip\u00a0G. Williams. 2019. Characterization of Leptazolines A\u2013D, Polar Oxazolines from the Cyanobacterium Leptolyngbya sp., Reveals a Glitch with the \u201cWilloughby\u2013Hoye\u201d Scripts for Calculating NMR Chemical Shifts. Organic Letters 21, 20 (Oct. 2019), 8449\u20138453. https:\/\/doi.org\/10.1021\/acs.orglett.9b03216","journal-title":"Scripts for Calculating NMR Chemical Shifts. Organic Letters"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btw759"},{"key":"e_1_3_2_1_9_1","volume-title":"Generalized DNA Barcode Design Based on Hamming Codes. PLOS ONE 7, 5 (05","author":"Bystrykh V.","year":"2012","unstructured":"Leonid\u00a0 V. Bystrykh . 2012. Generalized DNA Barcode Design Based on Hamming Codes. PLOS ONE 7, 5 (05 2012 ), 1\u20138. https:\/\/doi.org\/10.1371\/journal.pone.0036852 10.1371\/journal.pone.0036852 Leonid\u00a0V. Bystrykh. 2012. Generalized DNA Barcode Design Based on Hamming Codes. PLOS ONE 7, 5 (05 2012), 1\u20138. https:\/\/doi.org\/10.1371\/journal.pone.0036852"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3869"},{"key":"e_1_3_2_1_11_1","volume-title":"Nextflow enables reproducible computational workflows. Nature biotechnology 35, 4","author":"Di\u00a0Tommaso Paolo","year":"2017","unstructured":"Paolo Di\u00a0Tommaso , Maria Chatzou , Evan\u00a0 W Floden , Pablo\u00a0Prieto Barja , Emilio Palumbo , and Cedric Notredame . 2017. Nextflow enables reproducible computational workflows. Nature biotechnology 35, 4 ( 2017 ), 316\u2013319. Paolo Di\u00a0Tommaso, Maria Chatzou, Evan\u00a0W Floden, Pablo\u00a0Prieto Barja, Emilio Palumbo, and Cedric Notredame. 2017. Nextflow enables reproducible computational workflows. Nature biotechnology 35, 4 (2017), 316\u2013319."},{"key":"e_1_3_2_1_12_1","volume-title":"Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp. Frontiers in microbiology 8","author":"Dong Xiaoli","year":"2017","unstructured":"Xiaoli Dong , Manuel Kleiner , Christine\u00a0 E Sharp , Erin Thorson , Carmen Li , Dan Liu , and Marc Strous . 2017. Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp. Frontiers in microbiology 8 ( 2017 ), 1461. Xiaoli Dong, Manuel Kleiner, Christine\u00a0E Sharp, Erin Thorson, Carmen Li, Dan Liu, and Marc Strous. 2017. Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp. Frontiers in microbiology 8 (2017), 1461."},{"key":"e_1_3_2_1_13_1","volume-title":"Accelerating Gateway Development with Agave ToGo Webapps and Microsites. 10th International Workshop on Science Gateways (IWSG","author":"Dooley Rion","year":"2018","unstructured":"Rion Dooley and Sean\u00a0 B. Cleveland . 2018 . Accelerating Gateway Development with Agave ToGo Webapps and Microsites. 10th International Workshop on Science Gateways (IWSG 2018). Rion Dooley and Sean\u00a0B. Cleveland. 2018. Accelerating Gateway Development with Agave ToGo Webapps and Microsites. 10th International Workshop on Science Gateways (IWSG 2018)."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.1184"},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01043-13"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1002\/cpe.3526"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1521291113"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-38"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.2584"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.01541-09"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-017-1998-9"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1109\/MC.2008.470"}],"event":{"name":"PEARC '22: Practice and Experience in Advanced Research Computing","sponsor":["SIGAPP ACM Special Interest Group on Applied Computing","SIGHPC ACM Special Interest Group on High Performance Computing, Special Interest Group on High Performance Computing"],"location":"Boston MA USA","acronym":"PEARC '22"},"container-title":["Practice and Experience in Advanced Research Computing"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3491418.3530291","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3491418.3530291","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3491418.3530291","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T19:30:48Z","timestamp":1750188648000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3491418.3530291"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7,8]]},"references-count":21,"alternative-id":["10.1145\/3491418.3530291","10.1145\/3491418"],"URL":"https:\/\/doi.org\/10.1145\/3491418.3530291","relation":{},"subject":[],"published":{"date-parts":[[2022,7,8]]},"assertion":[{"value":"2022-07-08","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}