{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,9]],"date-time":"2025-09-09T22:12:11Z","timestamp":1757455931031,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":31,"publisher":"ACM","license":[{"start":{"date-parts":[[2022,8,7]],"date-time":"2022-08-07T00:00:00Z","timestamp":1659830400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"NSF","award":["1934553"],"award-info":[{"award-number":["1934553"]}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2022,8,7]]},"DOI":"10.1145\/3535508.3545509","type":"proceedings-article","created":{"date-parts":[[2022,7,28]],"date-time":"2022-07-28T22:26:03Z","timestamp":1659047163000},"page":"1-4","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":1,"title":["Combining spectral clustering and large cut algorithms to find compensatory functional modules from yeast physical and genetic interaction data with GLASS"],"prefix":"10.1145","author":[{"given":"Blessing","family":"Kolawole","sequence":"first","affiliation":[{"name":"Tufts University"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lenore J.","family":"Cowen","sequence":"additional","affiliation":[{"name":"Tufts University"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2022,8,7]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0005364"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0076339"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"crossref","unstructured":"S. R. Collins etal 2007. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 446 7137 (2007) 806--810.  S. R. Collins et al. 2007. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 446 7137 (2007) 806--810.","DOI":"10.1038\/nature05649"},{"key":"e_1_3_2_1_4_1","unstructured":"M. Costanzo B. VanderSluis etal 2016. A global genetic interaction network maps a wiring diagram of cellular function. Science 353 6306 (2016) aaf1420.  M. Costanzo B. VanderSluis et al. 2016. A global genetic interaction network maps a wiring diagram of cellular function. Science 353 6306 (2016) aaf1420."},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"crossref","unstructured":"J. A. Efe F. Plattner etal 2005. Yeast Mon2p is a highly conserved protein that functions in the cytoplasm-to-vacuole transport pathway and is required for Golgi homeostasis. Protein science 118 20 (2005) 4751--4764.  J. A. Efe F. Plattner et al. 2005. Yeast Mon2p is a highly conserved protein that functions in the cytoplasm-to-vacuole transport pathway and is required for Golgi homeostasis. Protein science 118 20 (2005) 4751--4764.","DOI":"10.1242\/jcs.02599"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"crossref","unstructured":"K. Endo Y. Tago etal 2007. Error-free RAD52 pathway and error-prone REV3 pathway determines spontaneous mutagenesis in Saccharomyces cerevisiae. Genes & genetic systems 82 1 (2007) 35--42.  K. Endo Y. Tago et al. 2007. Error-free RAD52 pathway and error-prone REV3 pathway determines spontaneous mutagenesis in Saccharomyces cerevisiae. Genes & genetic systems 82 1 (2007) 35--42.","DOI":"10.1266\/ggs.82.35"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"crossref","unstructured":"A. Gallant M. D. M. Leiserson Maxim Kachalov etal 2013. Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data. BMC bioinformatics 14 1 (2013) 1--7.  A. Gallant M. D. M. Leiserson Maxim Kachalov et al. 2013. Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data. BMC bioinformatics 14 1 (2013) 1--7.","DOI":"10.1186\/1471-2105-14-23"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/0027-5107(74)90176-6"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M510176200"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cub.2006.01.063"},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/0165-1110(90)90028-A"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"crossref","unstructured":"R. Kelley and T. Ideker. 2005. Systematic interpretation of genetic interactions using protein networks. Nature biotechnology 23 5 (2005) 561--566.  R. Kelley and T. Ideker. 2005. Systematic interpretation of genetic interactions using protein networks. Nature biotechnology 23 5 (2005) 561--566.","DOI":"10.1038\/nbt1096"},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cub.2006.03.043"},{"key":"e_1_3_2_1_14_1","volume-title":"Cellular roles of DNA polymerase &zeta","author":"Lawrence C. W.","year":"2002","unstructured":"C. W. Lawrence . 2002. Cellular roles of DNA polymerase &zeta ; and Rev1 protein. DNA repair 1, 6 ( 2002 ), 425--435. C. W. Lawrence. 2002. Cellular roles of DNA polymerase &zeta; and Rev1 protein. DNA repair 1, 6 (2002), 425--435."},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2011.0191"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0001922"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"crossref","unstructured":"J. R. Nelson C. W. Lawrence and D. C. Hinkle. 1996. Thymine-thymine dimer bypass by yeast DNA polymerase &zeta;. Science 272 5268 (1996) 1646--1649.  J. R. Nelson C. W. Lawrence and D. C. Hinkle. 1996. Thymine-thymine dimer bypass by yeast DNA polymerase &zeta;. Science 272 5268 (1996) 1646--1649.","DOI":"10.1126\/science.272.5268.1646"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"publisher","DOI":"10.1002\/pro.3978"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"crossref","unstructured":"F. P\u00e2ques and J. E. Haber. 1999. Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiology and mol. bio. rev. 63 2 (1999) 349--404.  F. P\u00e2ques and J. E. Haber. 1999. Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiology and mol. bio. rev. 63 2 (1999) 349--404.","DOI":"10.1128\/MMBR.63.2.349-404.1999"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.5555\/1953048.2078195"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.biochem.74.082803.133250"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M112.414565"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"crossref","unstructured":"U. Raudvere etal 2019. g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). Nucleic acids research 47 W1 (2019) W191--W198.  U. Raudvere et al. 2019. g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). Nucleic acids research 47 W1 (2019) W191--W198.","DOI":"10.1093\/nar\/gkz369"},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.C300054200"},{"key":"e_1_3_2_1_25_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1308627110"},{"key":"e_1_3_2_1_26_1","volume-title":"Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiology and mol. biol. rev. 66, 4","author":"Symington L.","year":"2002","unstructured":"L. Symington . 2002. Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiology and mol. biol. rev. 66, 4 ( 2002 ), 630--670. L. Symington. 2002. Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiology and mol. biol. rev. 66, 4 (2002), 630--670."},{"key":"e_1_3_2_1_27_1","unstructured":"A. H. Y. Tong G. Lesage etal 2004. Global mapping of the yeast genetic interaction network. science 303 5659 (2004) 808--813.  A. H. Y. Tong G. Lesage et al. 2004. Global mapping of the yeast genetic interaction network. science 303 5659 (2004) 808--813."},{"key":"e_1_3_2_1_28_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cell.2014.05.015"},{"key":"e_1_3_2_1_29_1","doi-asserted-by":"crossref","unstructured":"X. Wang Q. Sun etal 2014. Redefining the modular organization of the core Mediator complex. Cell research 24 7 (2014) 796--808.  X. Wang Q. Sun et al. 2014. Redefining the modular organization of the core Mediator complex. Cell research 24 7 (2014) 796--808.","DOI":"10.1038\/cr.2014.64"},{"key":"e_1_3_2_1_30_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.0510167103"},{"key":"e_1_3_2_1_31_1","unstructured":"E. A. Winzeler etal 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. science 285 5429 (1999) 901--906.  E. A. Winzeler et al. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. science 285 5429 (1999) 901--906."}],"event":{"name":"BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","sponsor":["SIGBIOM ACM Special Interest Group on Biomedical Computing"],"location":"Northbrook Illinois","acronym":"BCB '22"},"container-title":["Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3535508.3545509","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3535508.3545509","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3535508.3545509","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T17:49:47Z","timestamp":1750268987000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3535508.3545509"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,8,7]]},"references-count":31,"alternative-id":["10.1145\/3535508.3545509","10.1145\/3535508"],"URL":"https:\/\/doi.org\/10.1145\/3535508.3545509","relation":{},"subject":[],"published":{"date-parts":[[2022,8,7]]},"assertion":[{"value":"2022-08-07","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}