{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T04:12:53Z","timestamp":1750219973404,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":11,"publisher":"ACM","license":[{"start":{"date-parts":[[2022,10,21]],"date-time":"2022-10-21T00:00:00Z","timestamp":1666310400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2022,10,21]]},"DOI":"10.1145\/3569966.3570012","type":"proceedings-article","created":{"date-parts":[[2022,12,20]],"date-time":"2022-12-20T22:24:41Z","timestamp":1671575081000},"page":"152-158","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":1,"title":["Accelerating minimap2 for long-read sequencing on NUMA multi-core CPU"],"prefix":"10.1145","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4141-5950","authenticated-orcid":false,"given":"Qisheng","family":"Xu","sequence":"first","affiliation":[{"name":"National University of Defense Technology, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1256-8934","authenticated-orcid":false,"given":"Yong","family":"Dou","sequence":"additional","affiliation":[{"name":"National University of Defense Technology, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2491-2835","authenticated-orcid":false,"given":"Yanjie","family":"Sun","sequence":"additional","affiliation":[{"name":"National University of Defense Technology, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2022,12,20]]},"reference":[{"key":"e_1_3_2_1_1_1","first-page":"3100","volume-title":"England)","author":"Li Heng","year":"2018","unstructured":"[ 1 ] Heng Li . Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics (Oxford , England) , pages 3094\u2013 3100 , 2018 . [1] Heng Li. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics (Oxford, England), pages 3094\u20133100, 2018."},{"key":"e_1_3_2_1_2_1","first-page":"3369","volume-title":"Bioinformatics","author":"Roberts","year":"2004","unstructured":"[ 2 ] Roberts M.;Hayes W.;Hunt B.R.;Mount\u00a0S.M.;Yorke J.A. Reducing storage requirements for biological sequence comparison . Bioinformatics , pages 3363\u2013 3369 , 2004 . [2] Roberts M.;Hayes W.;Hunt B.R.;Mount\u00a0S.M.;Yorke J.A. Reducing storage requirements for biological sequence comparison. Bioinformatics, pages 3363\u20133369, 2004."},{"key":"e_1_3_2_1_3_1","volume-title":"2021 IEEE 12th Latin America Symposium on Circuits and System (LASCAS)","author":"Chau Carolina","year":"2021","unstructured":"[ 3 ] Carolina Teng;Renan W. Achjian;Caio C. Braga;Marcelo K. Zuffo;Wang\u00a0J. Chau . Accelerating the base-level alignment step of dna assembling in minimap2 algorithm using fpga . In 2021 IEEE 12th Latin America Symposium on Circuits and System (LASCAS) , 2021 . [3] Carolina Teng;Renan W. Achjian;Caio C. Braga;Marcelo K. Zuffo;Wang\u00a0J. Chau. Accelerating the base-level alignment step of dna assembling in minimap2 algorithm using fpga. In 2021 IEEE 12th Latin America Symposium on Circuits and System (LASCAS), 2021."},{"key":"e_1_3_2_1_4_1","volume-title":"2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM)","author":"Jason Licheng","year":"2019","unstructured":"[ 4 ] Licheng Guo; Jason Lau; Zhenyuan Ruan;Peng\u00a0Wei; Jason Cong . Hardware acceleration of long read pairwise overlapping in genome sequencing: A race between fpga and gpu . In 2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) , 2019 . [4] Licheng Guo;Jason Lau;Zhenyuan Ruan;Peng\u00a0Wei;Jason Cong. Hardware acceleration of long read pairwise overlapping in genome sequencing: A race between fpga and gpu. In 2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), 2019."},{"key":"e_1_3_2_1_5_1","first-page":"83","volume-title":"Nature Computational Science","author":"Kalikar Saurabh","year":"2022","unstructured":"[ 5 ] Saurabh Kalikar . Accelerating minimap2 for long-read sequencing applications on modern cpus . Nature Computational Science , pages 78\u2013 83 , 2022 . [5] Saurabh Kalikar. Accelerating minimap2 for long-read sequencing applications on modern cpus. Nature Computational Science, pages 78\u201383, 2022."},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1145\/3337821.3337918"},{"key":"e_1_3_2_1_7_1","volume-title":"Imos: improved meta-aligner and minimap2 on spark. BMC bioinformatics, page\u00a051","author":"Nejad Mostafa Hadadian","year":"2019","unstructured":"[ 7 ] Mostafa Hadadian Nejad Yousefi; Maziar Goudarzi; Seyed\u00a0Abolfazl Motahari . Imos: improved meta-aligner and minimap2 on spark. BMC bioinformatics, page\u00a051 , 2019 . [7] Mostafa Hadadian Nejad Yousefi;Maziar Goudarzi;Seyed\u00a0Abolfazl Motahari. Imos: improved meta-aligner and minimap2 on spark. BMC bioinformatics, page\u00a051, 2019."},{"key":"e_1_3_2_1_8_1","volume-title":"\u00a0Yingbo Cui\u00a0\u00a02. Minimapr: A parallel alignment tool for the analysis of large-scale third-generation sequencing data. Computational biology and chemistry, page 107735","author":"Xiangke Shaoliang Peng\u00a0","year":"2022","unstructured":"[ 8 ] \u00a0 Shaoliang Peng\u00a0 3 \u00a0 Xiangke Liao\u00a0 4 \u00a0 Yangbo Yu\u00a0\u00a01 Zihang Wang\u00a0\u00a01 , \u00a0Yingbo Cui\u00a0\u00a02. Minimapr: A parallel alignment tool for the analysis of large-scale third-generation sequencing data. Computational biology and chemistry, page 107735 , 2022 . [8] \u00a0Shaoliang Peng\u00a0 3 \u00a0Xiangke Liao\u00a0 4 \u00a0Yangbo Yu\u00a0\u00a01 Zihang Wang\u00a0\u00a01, \u00a0Yingbo Cui\u00a0\u00a02. Minimapr: A parallel alignment tool for the analysis of large-scale third-generation sequencing data. Computational biology and chemistry, page 107735, 2022."},{"key":"e_1_3_2_1_9_1","first-page":"357","volume-title":"2009 18th International Conference on Parallel Architectures and Compilation Techniques","author":"Lu Qingda","unstructured":"[ 9 ] Qingda Lu , Christophe Alias , Uday Bondhugula , Thomas Henretty , Sriram Krishnamoorthy , Jagannathan Ramanujam , Atanas Rountev , Ponnuswamy Sadayappan , Yongjian Chen , Haibo Lin , et\u00a0al. Data layout transformation for enhancing data locality on nuca chip multiprocessors . In 2009 18th International Conference on Parallel Architectures and Compilation Techniques , pages 348\u2013 357 . IEEE, 2009. [9] Qingda Lu, Christophe Alias, Uday Bondhugula, Thomas Henretty, Sriram Krishnamoorthy, Jagannathan Ramanujam, Atanas Rountev, Ponnuswamy Sadayappan, Yongjian Chen, Haibo Lin, et\u00a0al. Data layout transformation for enhancing data locality on nuca chip multiprocessors. In 2009 18th International Conference on Parallel Architectures and Compilation Techniques, pages 348\u2013357. IEEE, 2009."},{"key":"e_1_3_2_1_10_1","volume-title":"2013 42nd International Conference on Parallel Processing","author":"Jin Yu","year":"2013","unstructured":"[ 10 ] Yufei; Yu Dantong; Jin Shudong; Robertazzi\u00a0Thomas Li , Tan;Ren. Characterization of input\/output bandwidth performance models in numa architecture for data intensive applications . In 2013 42nd International Conference on Parallel Processing , 2013 . [10] Yufei;Yu Dantong;Jin Shudong;Robertazzi\u00a0Thomas Li, Tan;Ren. Characterization of input\/output bandwidth performance models in numa architecture for data intensive applications. In 2013 42nd International Conference on Parallel Processing, 2013."},{"key":"e_1_3_2_1_11_1","first-page":"2019","author":"Guo Li","year":"2019","unstructured":"[ 11 ] Xiaowen1 2; Li Chen1; Guo Yang1; Liao Man1; Liu\u00a0Zhong1 Wang , Zicong1;\u00a0Chen. Load-balanced link distribution in mesh-based many-core systems. In 21st IEEE International Conference on High Performance Computing and Communications, 17th IEEE International Conference on Smart City and 5th IEEE International Conference on Data Science and Systems , HPCC\/SmartCity\/DSS 2019 , 2019 . [11] Xiaowen1 2; Li Chen1; Guo Yang1; Liao Man1; Liu\u00a0Zhong1 Wang, Zicong1;\u00a0Chen. Load-balanced link distribution in mesh-based many-core systems. In 21st IEEE International Conference on High Performance Computing and Communications, 17th IEEE International Conference on Smart City and 5th IEEE International Conference on Data Science and Systems, HPCC\/SmartCity\/DSS 2019, 2019.","journal-title":"HPCC\/SmartCity\/DSS"}],"event":{"name":"CSSE 2022: 2022 5th International Conference on Computer Science and Software Engineering","acronym":"CSSE 2022","location":"Guilin China"},"container-title":["Proceedings of the 5th International Conference on Computer Science and Software Engineering"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3569966.3570012","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3569966.3570012","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T17:49:19Z","timestamp":1750182559000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3569966.3570012"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,10,21]]},"references-count":11,"alternative-id":["10.1145\/3569966.3570012","10.1145\/3569966"],"URL":"https:\/\/doi.org\/10.1145\/3569966.3570012","relation":{},"subject":[],"published":{"date-parts":[[2022,10,21]]},"assertion":[{"value":"2022-12-20","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}