{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,22]],"date-time":"2025-11-22T11:36:24Z","timestamp":1763811384835,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":14,"publisher":"ACM","license":[{"start":{"date-parts":[[2023,11,6]],"date-time":"2023-11-06T00:00:00Z","timestamp":1699228800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2023,11,6]]},"DOI":"10.1145\/3625007.3629127","type":"proceedings-article","created":{"date-parts":[[2024,3,15]],"date-time":"2024-03-15T15:12:42Z","timestamp":1710515562000},"page":"431-435","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":1,"title":["KoExPubMed: A Tool for Effective and Customized Knowledge Extraction from PubMed"],"prefix":"10.1145","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2529-5533","authenticated-orcid":false,"given":"Tansel","family":"Ozyer","sequence":"first","affiliation":[{"name":"Ankara Medipol University, ankara, Turkey"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6657-9738","authenticated-orcid":false,"given":"Reda","family":"Alhajj","sequence":"additional","affiliation":[{"name":"University of Calgary, Calgary, AB, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3439-2917","authenticated-orcid":false,"given":"Jon","family":"Rokne","sequence":"additional","affiliation":[{"name":"University of Calgary, Calgary, AB, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8751-4108","authenticated-orcid":false,"given":"Kashfia","family":"Sailunaz","sequence":"additional","affiliation":[{"name":"University of Calgary, Canada, AB, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1118-002X","authenticated-orcid":false,"given":"Gabi","family":"Jurca","sequence":"additional","affiliation":[{"name":"University of Calgary, Canada, AB, Canada"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1933-410X","authenticated-orcid":false,"given":"Deniz","family":"Bestepe","sequence":"additional","affiliation":[{"name":"Istanbul Medipol University, Istanbul, Turkiye"}]},{"ORCID":"https:\/\/orcid.org\/0009-0003-5109-0712","authenticated-orcid":false,"given":"Lama","family":"Alhajj","sequence":"additional","affiliation":[{"name":"Istanbul Medipol University, Istanbul, Turkiye"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4085-054X","authenticated-orcid":false,"given":"Busra","family":"Kaartay","sequence":"additional","affiliation":[{"name":"Yapi Kredi Teknoloji, Istanbul, Turkiye"}]}],"member":"320","published-online":{"date-parts":[[2024,3,15]]},"reference":[{"key":"e_1_3_2_1_1_1","volume-title":"URL https:\/\/pubmed.ncbi.nlm.nih.gov\/","author":"National Library of Medicine, PubMed.","year":"2023","unstructured":"National Library of Medicine, PubMed. URL https:\/\/pubmed.ncbi.nlm.nih.gov\/, 2023."},{"key":"e_1_3_2_1_2_1","volume-title":"URL https:\/\/developers.google.com\/maps\/documentation\/geocoding\/overview","author":"API.","year":"2023","unstructured":"Google, Geocoding API. URL https:\/\/developers.google.com\/maps\/documentation\/geocoding\/overview, 2023."},{"volume-title":"becas API. URL https:\/\/bioinformatics.ua.pt\/becas\/#!\/api","year":"2023","key":"e_1_3_2_1_3_1","unstructured":"Becas, becas API. URL https:\/\/bioinformatics.ua.pt\/becas\/#!\/api, 2023."},{"volume-title":"Programmatic access. URL https:\/\/www.uniprot.org\/help\/programmatic_access","year":"2023","key":"e_1_3_2_1_4_1","unstructured":"UniPort, Programmatic access. URL https:\/\/www.uniprot.org\/help\/programmatic_access, 2023."},{"key":"e_1_3_2_1_5_1","first-page":"350","volume-title":"Studies in health technology and informatics, 295","author":"Botsis T.","year":"2022","unstructured":"T. Botsis, J. Murray, L. E. Alessandro, D. Palsgrove, W. A. Wei, J. R. White, V. E. Velculescu, and V. Anagnostou, Natural language processing approaches for retrieval of clinically relevant genomic information in cancer, Studies in health technology and informatics, 295, p.350, 2022."},{"key":"e_1_3_2_1_6_1","first-page":"165","volume-title":"BMC bioinformatics, 19","author":"Simon C.","year":"2019","unstructured":"C. Simon, K. Davidsen, C. Hansen, E. Seymour, M. B. Barnkob, and L. R. Olsen, BioReader: a text mining tool for performing classification of biomedical literature, BMC bioinformatics, 19, pp.165--170, 2019."},{"key":"e_1_3_2_1_7_1","volume-title":"Database, p.baq036","author":"Lu Z.","year":"2011","unstructured":"Z. Lu, PubMed and beyond: a survey of web tools for searching biomedical literature, Database, p.baq036, 2011."},{"key":"e_1_3_2_1_8_1","first-page":"671","volume-title":"Journal of biosciences, 40","author":"Rani J.","year":"2015","unstructured":"J. Rani, A. R. Shah, and S. Ramachandran, pubmed.mineR: An R package with text-mining algorithms to analyse PubMed abstracts, Journal of biosciences, 40, pp.671--682, 2015."},{"issue":"2","key":"e_1_3_2_1_9_1","first-page":"99","article-title":"PubMiner: machine learning-based text mining for biomedical information analysis","volume":"2","author":"Eom J. H.","year":"2004","unstructured":"J. H. Eom, and B. T. Zhang, PubMiner: machine learning-based text mining for biomedical information analysis, Genomics & Informatics, 2(2), pp.99--106, 2004.","journal-title":"Genomics & Informatics"},{"key":"e_1_3_2_1_10_1","unstructured":"J. Bockskopf Y. uning Chen D. avid Dowey B. Gao A. Garza and I. Smith PubMiner: An Interactive Tool for Demographic-enriched PubMed Searches."},{"key":"e_1_3_2_1_11_1","first-page":"871","volume-title":"Expert review of proteomics, 16(11--12)","author":"Han Y.","year":"2019","unstructured":"Y. Han, S. A. Wennersten, and M. P. Lam, Working the literature harder: what can text mining and bibliometric analysis reveal?, Expert review of proteomics, 16(11--12), pp.871--873, 2019."},{"issue":"7101","key":"e_1_3_2_1_12_1","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1136\/bmj.315.7101.180","article-title":"How to read a paper: the Medline database","volume":"315","author":"Greenhalgh T.","year":"1997","unstructured":"T. Greenhalgh, How to read a paper: the Medline database, Bmj, 315(7101), pp.180--183, 1997.","journal-title":"Bmj"},{"key":"e_1_3_2_1_13_1","first-page":"2300150","volume-title":"Advanced Healthcare Materials","author":"Corvi J. O.","year":"2023","unstructured":"J. O. Corvi, A. McKitrick, J. M. Fern\u00e1ndez, C. V. Fuentesl\u00f3pez, J. L. Gelp\u00ec, M. P. Ginebra, S. Capella-Gutierrez, and O. Hakimi, DEBBIE: The Open Access Database of Experimental Scaffolds and Biomaterials Built Using an Automated Text Mining Pipeline, Advanced Healthcare Materials, p.2300150, 2023."},{"key":"e_1_3_2_1_14_1","volume-title":"GenCLiP 3: mining human genes' functions and regulatory networks from PubMed based on co-occurrences and natural language processing","author":"Wang J. H.","year":"2020","unstructured":"J. H. Wang, L. F. Zhao, H. F. Wang, Y. T. Wen, K. K. Jiang, X. M. Mao, Z. Y. Zhou, K. T. Yao, Q. S. Geng, D. Guo, and Z. X. Huang, GenCLiP 3: mining human genes' functions and regulatory networks from PubMed based on co-occurrences and natural language processing, 2020."}],"event":{"name":"ASONAM '23: International Conference on Advances in Social Networks Analysis and Mining","sponsor":["SIGKDD ACM Special Interest Group on Knowledge Discovery in Data","IEEE CS"],"location":"Kusadasi Turkiye","acronym":"ASONAM '23"},"container-title":["Proceedings of the International Conference on Advances in Social Networks Analysis and Mining"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3625007.3629127","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3625007.3629127","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T16:46:50Z","timestamp":1750178810000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3625007.3629127"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,11,6]]},"references-count":14,"alternative-id":["10.1145\/3625007.3629127","10.1145\/3625007"],"URL":"https:\/\/doi.org\/10.1145\/3625007.3629127","relation":{},"subject":[],"published":{"date-parts":[[2023,11,6]]},"assertion":[{"value":"2024-03-15","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}