{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T04:59:08Z","timestamp":1750309148291,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":32,"publisher":"ACM","license":[{"start":{"date-parts":[[2024,6,3]],"date-time":"2024-06-03T00:00:00Z","timestamp":1717372800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2024,6,3]]},"DOI":"10.1145\/3625549.3658692","type":"proceedings-article","created":{"date-parts":[[2024,8,30]],"date-time":"2024-08-30T15:55:29Z","timestamp":1725033329000},"page":"322-333","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["SIMCoV-GPU: Accelerating an Agent-Based Model for Exascale"],"prefix":"10.1145","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2360-8700","authenticated-orcid":false,"given":"Kirtus","family":"Leyba","sequence":"first","affiliation":[{"name":"Arizona State University, Tempe, Arizona, United States of America"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3299-472X","authenticated-orcid":false,"given":"Steven","family":"Hofmeyr","sequence":"additional","affiliation":[{"name":"Lawrence Berkeley National Laboratory, Berkeley, California, United States of America"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5904-1646","authenticated-orcid":false,"given":"Stephanie","family":"Forrest","sequence":"additional","affiliation":[{"name":"Arizona State University, Tempe, Arizona, United States of America"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0069-8106","authenticated-orcid":false,"given":"Judy","family":"Cannon","sequence":"additional","affiliation":[{"name":"University of New Mexico, Albuquerque, New Mexico, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8848-9554","authenticated-orcid":false,"given":"Melanie","family":"Moses","sequence":"additional","affiliation":[{"name":"University of New Mexico, Albuquerque, New Mexico, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"320","published-online":{"date-parts":[[2024,8,30]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"crossref","unstructured":"Frontier supercomputer debuts as world's fastest breaking exascale barrier. https:\/\/www.ornl.gov\/news\/frontier-supercomputer-debuts-worlds-fastest-breaking-exascale-barrier. Accessed: 2023-10-23.","DOI":"10.1016\/j.eng.2023.02.004"},{"key":"e_1_3_2_1_2_1","volume-title":"https:\/\/docs.nersc.gov\/systems\/perlmutter\/architecture\/. Last Accessed","author":"Perlmutter","year":"2024","unstructured":"Perlmutter architecture. https:\/\/docs.nersc.gov\/systems\/perlmutter\/architecture\/. Last Accessed January 25, 2024."},{"key":"e_1_3_2_1_3_1","volume-title":"3rd International ICST Conference on Simulation Tools and Techniques","author":"Aaby B. G.","year":"2010","unstructured":"Aaby, B. G., Perumalla, K. S., and Seal, S. K. Efficient simulation of agent-based models on multi-gpu and multi-core clusters. In 3rd International ICST Conference on Simulation Tools and Techniques (2010)."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1109\/DS-RT52167.2021.9576156"},{"key":"e_1_3_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1177\/0022002797041002001"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1073\/pnas.2102139118","article-title":"Preventing extreme polarization of political attitudes","volume":"118","author":"Axelrod R.","year":"2021","unstructured":"Axelrod, R., Daymude, J. J., and Forrest, S. Preventing extreme polarization of political attitudes. Proceedings of the National Academy of Sciences 118, 50 (2021), e2102139118.","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"e_1_3_2_1_7_1","volume-title":"Agent-based modeling in economics and finance: Past, present, and future. Journal of Economic Literature","author":"Axtell R. L.","year":"2022","unstructured":"Axtell, R. L., and Farmer, J. D. Agent-based modeling in economics and finance: Past, present, and future. Journal of Economic Literature (2022)."},{"key":"e_1_3_2_1_8_1","first-page":"963","volume-title":"2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS)","author":"Bachan J.","year":"2019","unstructured":"Bachan, J., Baden, S. B., Hofmeyr, S., Jacqelin, M., Kamil, A., Bonachea, D., Hargrove, P. H., and Ahmed, H. Upc++: A high-performance communication framework for asynchronous computation. In 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (2019), IEEE, pp. 963--973."},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.future.2016.08.015"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1109\/TCSET.2018.8336184","volume-title":"2018 14th International Conference on Advanced Trends in Radioelecrtronics, Telecommunications and Computer Engineering (TCSET)","author":"Chumachenko D.","year":"2018","unstructured":"Chumachenko, D., Dobriak, V., Mazorchuk, M., Meniailov, I., and Bazilevych, K. On agent-based approach to influenza and acute respiratory virus infection simulation. In 2018 14th International Conference on Advanced Trends in Radioelecrtronics, Telecommunications and Computer Engineering (TCSET) (2018), IEEE, pp. 192--195."},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1145\/3592979.3593403"},{"key":"e_1_3_2_1_12_1","first-page":"454","volume-title":"Euro-Par 2015: Parallel Processing Workshops: Euro-Par 2015 International Workshops","author":"Collier N.","year":"2015","unstructured":"Collier, N., Ozik, J., and Macal, C. M. Large-scale agent-based modeling with repast hpc: A case study in parallelizing an agent-based model. In Euro-Par 2015: Parallel Processing Workshops: Euro-Par 2015 International Workshops, Vienna, Austria, August 24--25, 2015, Revised Selected Papers 21 (2015), Springer, pp. 454--465."},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"crossref","first-page":"602","DOI":"10.1109\/IPDPS54959.2023.00066","volume-title":"2023 IEEE International Parallel and Distributed Processing Symposium (IPDPS)","author":"Davis J. H.","year":"2023","unstructured":"Davis, J. H., Shafner, J., Nichols, D., Grube, N., Martin, P., and Bhatele, A. Porting a computational fluid dynamics code with amr to large-scale gpu platforms. In 2023 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (2023), IEEE, pp. 602--612."},{"key":"e_1_3_2_1_14_1","volume-title":"Individual-based models in ecology after four decades. F1000prime reports 6","author":"DeAngelis D. L.","year":"2014","unstructured":"DeAngelis, D. L., and Grimm, V. Individual-based models in ecology after four decades. F1000prime reports 6 (2014)."},{"key":"e_1_3_2_1_15_1","volume-title":"Physiology, lung capacity. StatPearls [Internet]","author":"Delgado B. J.","year":"2022","unstructured":"Delgado, B. J., and Bajaj, T. Physiology, lung capacity. StatPearls [Internet] (2022)."},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"crossref","first-page":"e108","DOI":"10.1371\/journal.pcbi.0020108","article-title":"Modeling somatic evolution in tumoregenesis","volume":"2","author":"Gerety R.","year":"2006","unstructured":"Gerety, R., Spencer, S. L., Pienta, K. J., and Forrest, S. Modeling somatic evolution in tumoregenesis. PLoS Computational Biology 2, 8 e108 (2006).","journal-title":"PLoS Computational Biology"},{"key":"e_1_3_2_1_17_1","volume-title":"Optimizing parallel reduction in cuda. Nvidia developer technology 2, 4","author":"Harris M.","year":"2007","unstructured":"Harris, M., et al. Optimizing parallel reduction in cuda. Nvidia developer technology 2, 4 (2007), 70."},{"key":"e_1_3_2_1_18_1","volume-title":"In-host mathematical modelling of covid-19 in humans. Annual reviews in control 50","author":"Hernandez-Vargas E. A.","year":"2020","unstructured":"Hernandez-Vargas, E. A., and Velasco-Hernandez, J. X. In-host mathematical modelling of covid-19 in humans. Annual reviews in control 50 (2020), 448--456."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1145\/285305.285321"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1145\/3569951.3597573","article-title":"The sol supercomputer at arizona state university","author":"Jennewein D. M.","year":"2023","unstructured":"Jennewein, D. M., Lee, J., Kurtz, C., Dizon, W., Shaeffer, I., Chapman, A., Chiqete, A., Burks, J., Carlson, A., Mason, N., et al. The sol supercomputer at arizona state university. In Practice and Experience in Advanced Research Computing. 2023, pp. 296--301.","journal-title":"Practice and Experience in Advanced Research Computing."},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.5555\/3433701.3433822"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1145\/3592979.3593417"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1109\/DS-RT52167.2021.9576129"},{"key":"e_1_3_2_1_24_1","volume-title":"Demand shocks and supply chain resilience: an agent based modelling approach and application to the potato supply chain. Tech. rep","author":"Lu L.","year":"2021","unstructured":"Lu, L., Nguyen, R., Rahman, M. M., and Winfree, J. Demand shocks and supply chain resilience: an agent based modelling approach and application to the potato supply chain. Tech. rep., National Bureau of Economic Research, 2021."},{"key":"e_1_3_2_1_25_1","volume-title":"Spatially distributed infection increases viral load in a computational model of sars-cov-2 lung infection. PLoS computational biology 17, 12","author":"Moses M. E.","year":"2021","unstructured":"Moses, M. E., Hofmeyr, S., Cannon, J. L., Andrews, A., Gridley, R., Hinga, M., Leyba, K., Pribisova, A., Surjadidjaja, V., Tasnim, H., et al. Spatially distributed infection increases viral load in a computational model of sars-cov-2 lung infection. PLoS computational biology 17, 12 (2021), e1009735."},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1109\/TCSS.2018.2859189","article-title":"Extreme-scale dynamic exploration of a distributed agent-based model with the emews framework","volume":"5","author":"Ozik J.","year":"2018","unstructured":"Ozik, J., Collier, N. T., Wozniak, J. M., Macal, C. M., and An, G. Extreme-scale dynamic exploration of a distributed agent-based model with the emews framework. IEEE Transactions on Computational Social Systems 5, 3 (2018), 884--895.","journal-title":"IEEE Transactions on Computational Social Systems"},{"key":"e_1_3_2_1_27_1","first-page":"383","volume-title":"Euro-Par 2014: Parallel Processing Workshops: Euro-Par 2014 International Workshops, Porto, Portugal, August 25--26","author":"Richmond P.","year":"2014","unstructured":"Richmond, P. Resolving conflicts between multiple competing agents in parallel simulations. In Euro-Par 2014: Parallel Processing Workshops: Euro-Par 2014 International Workshops, Porto, Portugal, August 25--26, 2014, Revised Selected Papers, Part I 20 (2014), Springer, pp. 383--394."},{"key":"e_1_3_2_1_28_1","volume-title":"High performance cellular level agent-based simulation with flame for the gpu. Briefings in bioinformatics 11, 3","author":"Richmond P.","year":"2010","unstructured":"Richmond, P., Walker, D., Coakley, S., and Romano, D. High performance cellular level agent-based simulation with flame for the gpu. Briefings in bioinformatics 11, 3 (2010), 334--347."},{"key":"e_1_3_2_1_29_1","doi-asserted-by":"publisher","DOI":"10.1145\/2024156.2024169"},{"key":"e_1_3_2_1_30_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.5751\/ES-08841-220125","article-title":"Using an agent-based model to examine forest management outcomes in a fire-prone landscape in oregon, usa","volume":"22","author":"Spies T. A.","year":"2017","unstructured":"Spies, T. A., White, E., Ager, A., Kline, J. D., Bolte, J. P., Platt, E. K., Olsen, K. A., Pabst, R. J., Barros, A. M., Bailey, J. D., et al. Using an agent-based model to examine forest management outcomes in a fire-prone landscape in oregon, usa. Ecology and Society 22, 1 (2017).","journal-title":"Ecology and Society"},{"key":"e_1_3_2_1_31_1","volume-title":"Modeling the viral dynamics of sars-cov-2 infection. Mathematical biosciences 328","author":"Wang S.","year":"2020","unstructured":"Wang, S., Pan, Y., Wang, Q., Miao, H., Brown, A. N., and Rong, L. Modeling the viral dynamics of sars-cov-2 infection. Mathematical biosciences 328 (2020), 108438."},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1177\/10943420211022811","article-title":"Amrex: Block-structured adaptive mesh refinement for multiphysics applications","volume":"35","author":"Zhang W.","year":"2021","unstructured":"Zhang, W., Myers, A., Gott, K., Almgren, A., and Bell, J. Amrex: Block-structured adaptive mesh refinement for multiphysics applications. The International Journal of High Performance Computing Applications 35, 6 (2021), 508--526.","journal-title":"The International Journal of High Performance Computing Applications"}],"event":{"name":"HPDC '24: 33rd International Symposium on High-Performance Parallel and Distributed Computing","sponsor":["SIGARCH ACM Special Interest Group on Computer Architecture","SIGHPC ACM Special Interest Group on High Performance Computing, Special Interest Group on High Performance Computing"],"location":"Pisa Italy","acronym":"HPDC '24"},"container-title":["Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3625549.3658692","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3625549.3658692","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T22:50:38Z","timestamp":1750287038000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3625549.3658692"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,6,3]]},"references-count":32,"alternative-id":["10.1145\/3625549.3658692","10.1145\/3625549"],"URL":"https:\/\/doi.org\/10.1145\/3625549.3658692","relation":{},"subject":[],"published":{"date-parts":[[2024,6,3]]},"assertion":[{"value":"2024-08-30","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}