{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,5]],"date-time":"2026-08-05T16:15:08Z","timestamp":1785946508808,"version":"3.56.0"},"publisher-location":"New York, NY, USA","reference-count":33,"publisher":"ACM","license":[{"start":{"date-parts":[[2025,4,22]],"date-time":"2025-04-22T00:00:00Z","timestamp":1745280000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"name":"EPSRC","award":["EP\/Y017706\/1"],"award-info":[{"award-number":["EP\/Y017706\/1"]}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2025,4,22]]},"DOI":"10.1145\/3696410.3714672","type":"proceedings-article","created":{"date-parts":[[2025,4,22]],"date-time":"2025-04-22T23:08:29Z","timestamp":1745363309000},"page":"22-34","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":5,"title":["TransBox:\n            <i>EL<\/i>\n            <sup>++<\/sup>\n            -closed Ontology Embedding"],"prefix":"10.1145","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4262-4001","authenticated-orcid":false,"given":"Hui","family":"Yang","sequence":"first","affiliation":[{"name":"The University of Manchester, Manchester, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4643-6750","authenticated-orcid":false,"given":"Jiaoyan","family":"Chen","sequence":"additional","affiliation":[{"name":"The University of Manchester, Manchester, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4103-3389","authenticated-orcid":false,"given":"Uli","family":"Sattler","sequence":"additional","affiliation":[{"name":"The University of Manchester, Manchester, United Kingdom"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"320","published-online":{"date-parts":[[2025,4,22]]},"reference":[{"key":"e_1_3_2_1_1_1","doi-asserted-by":"crossref","unstructured":"Michael Ashburner Catherine A Ball Judith A Blake David Botstein Heather Butler J Michael Cherry Allan P Davis Kara Dolinski Selina S Dwight Janan T Eppig et al. 2000. Gene ontology: tool for the unification of biology. Nature genetics Vol. 25 1 (2000) 25--29.","DOI":"10.1038\/75556"},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/J.ARTINT.2023.104034"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1007\/978--3--540--32254--214"},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1057\/jbr.2013.13"},{"key":"e_1_3_2_1_5_1","volume-title":"Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence, IJCAI 2016","author":"Bienvenu Meghyn","year":"2016","unstructured":"Meghyn Bienvenu. 2016. Ontology-Mediated Query Answering: Harnessing Knowledge to Get More from Data. In Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence, IJCAI 2016, New York, NY, USA, 9--15 July 2016,, Subbarao Kambhampati (Ed.). IJCAI\/AAAI Press, 4058--4061. http:\/\/www.ijcai.org\/Abstract\/16\/600"},{"key":"e_1_3_2_1_6_1","volume-title":"Bio-ontologies: current trends and future directions. Briefings in bioinformatics","author":"Bodenreider Olivier","year":"2006","unstructured":"Olivier Bodenreider and Robert Stevens. 2006. Bio-ontologies: current trends and future directions. Briefings in bioinformatics, Vol. 7, 3 (2006), 256--274."},{"key":"e_1_3_2_1_7_1","volume-title":"Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems","author":"Bordes Antoine","year":"2013","unstructured":"Antoine Bordes, Nicolas Usunier, Alberto Garc\u00eda-Dur\u00e1n, Jason Weston, and Oksana Yakhnenko. 2013. Translating Embeddings for Modeling Multi-relational Data. In Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5--8, 2013, Lake Tahoe, Nevada, United States,, Christopher J. C. Burges, L\u00e9on Bottou, Zoubin Ghahramani, and Kilian Q. Weinberger (Eds.). 2787--2795. https:\/\/proceedings.neurips.cc\/paper\/2013\/hash\/1cecc7a77928ca8133fa24680a88d2f9-Abstract.html"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1145\/3360901.3364424"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1007\/S11280-023-01169--9"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1007\/S10994-021-05997--6"},{"key":"e_1_3_2_1_11_1","unstructured":"Jiaoyan Chen Olga Mashkova Fernando Zhapa-Camacho Robert Hoehndorf Yuan He and Ian Horrocks. [n. d.]. Ontology Embedding: A Survey of Methods Applications and Resources. arxiv: 2406.10964 [cs] http:\/\/arxiv.org\/abs\/2406.10964"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1145\/3583780.3615126"},{"key":"e_1_3_2_1_13_1","unstructured":"Kevin Donnelly et al. 2006. SNOMED-CT: The advanced terminology and coding system for eHealth. Studies in health technology and informatics Vol. 121 (2006) 279."},{"key":"e_1_3_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1016\/J.IJINFOMGT.2009.11.012"},{"key":"e_1_3_2_1_15_1","volume-title":"Quantum Embedding of Knowledge for Reasoning. In Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019","author":"Garg Dinesh","year":"2019","unstructured":"Dinesh Garg, Shajith Ikbal, Santosh K. Srivastava, Harit Vishwakarma, Hima P. Karanam, and L. Venkata Subramaniam. 2019. Quantum Embedding of Knowledge for Reasoning. In Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, NeurIPS 2019, December 8--14, 2019, Vancouver, BC, Canada,, Hanna M. Wallach, Hugo Larochelle, Alina Beygelzimer, Florence d'Alch\u00e9-Buc, Emily B. Fox, and Roman Garnett (Eds.). 5595--5605. https:\/\/proceedings.neurips.cc\/paper\/2019\/hash\/cb12d7f933e7d102c52231bf62b8a678-Abstract.html"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1017\/S026988891300012X"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1145\/3589334.3645648"},{"key":"e_1_3_2_1_18_1","volume-title":"A survey on knowledge graphs: Representation, acquisition, and applications","author":"Ji Shaoxiong","year":"2021","unstructured":"Shaoxiong Ji, Shirui Pan, Erik Cambria, Pekka Marttinen, and S Yu Philip. 2021. A survey on knowledge graphs: Representation, acquisition, and applications. IEEE transactions on neural networks and learning systems, Vol. 33, 2 (2021), 494--514."},{"key":"e_1_3_2_1_19_1","volume-title":"Kingma and Jimmy Ba","author":"Diederik","year":"2015","unstructured":"Diederik P. Kingma and Jimmy Ba. 2015. Adam: A Method for Stochastic Optimization. In 3rd International Conference on Learning Representations, ICLR 2015, San Diego, CA, USA, May 7--9, 2015, Conference Track Proceedings, Yoshua Bengio and Yann LeCun (Eds.). http:\/\/arxiv.org\/abs\/1412.6980"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1007\/s13218-020-00655-w"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1007\/978--3--642--45221--537"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.24963\/ijcai.2019"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1109\/5254.920602"},{"key":"e_1_3_2_1_24_1","volume-title":"Proceedings of the AAAI 2021 Spring Symposium on Combining Machine Learning and Knowledge Engineering (AAAI-MAKE","author":"Mondal Sutapa","year":"2021","unstructured":"Sutapa Mondal, Sumit Bhatia, and Raghava Mutharaju. 2021. EmEL: Embeddings for EL Description Logic. In Proceedings of the AAAI 2021 Spring Symposium on Combining Machine Learning and Knowledge Engineering (AAAI-MAKE 2021), Stanford University, Palo Alto, California, USA, March 22--24, 2021 (CEUR Workshop Proceedings, Vol. 2846), Andreas Martin, Knut Hinkelmann, Hans-Georg Fill, Aurona Gerber, Doug Lenat, Reinhard Stolle, and Frank van Harmelen (Eds.). CEUR-WS.org. https:\/\/ceur-ws.org\/Vol-2846\/paper19.pdf"},{"key":"e_1_3_2_1_25_1","volume-title":"Georgios V Gkoutos, Suzanna E Lewis, and Melissa A Haendel.","author":"Mungall Christopher J","year":"2012","unstructured":"Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, and Melissa A Haendel. 2012. Uberon, an integrative multi-species anatomy ontology. Genome biology, Vol. 13 (2012), 1--20."},{"key":"e_1_3_2_1_26_1","unstructured":"Xi Peng Zhenwei Tang Maxat Kulmanov Kexin Niu and Robert Hoehndorf. [n. d.]. Description Logic EL Embeddings with Intersectional Closure. arxiv: 2202.14018 [cs] http:\/\/arxiv.org\/abs\/2202.14018"},{"key":"e_1_3_2_1_27_1","volume-title":"Medical Informatics Europe'96","author":"Rector Alan L","unstructured":"Alan L Rector, Jeremy E Rogers, and Pam Pole. 1996. The GALEN high level ontology. In Medical Informatics Europe'96. IOS Press, 174--178."},{"key":"e_1_3_2_1_28_1","doi-asserted-by":"publisher","DOI":"10.1093\/BIOINFORMATICS"},{"key":"e_1_3_2_1_29_1","volume-title":"FALCON: faithful neural semantic entailment over ALC ontologies. arXiv preprint arXiv:2208.07628","author":"Tang Zhenwei","year":"2022","unstructured":"Zhenwei Tang, Tilman Hinnerichs, Xi Peng, Xiangliang Zhang, and Robert Hoehndorf. 2022. FALCON: faithful neural semantic entailment over ALC ontologies. arXiv preprint arXiv:2208.07628 (2022)."},{"key":"e_1_3_2_1_30_1","volume-title":"Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017","author":"Vaswani Ashish","year":"2017","unstructured":"Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz Kaiser, and Illia Polosukhin. 2017. Attention is All you Need. In Advances in Neural Information Processing Systems 30: Annual Conference on Neural Information Processing Systems 2017, December 4--9, 2017, Long Beach, CA, USA,, Isabelle Guyon, Ulrike von Luxburg, Samy Bengio, Hanna M. Wallach, Rob Fergus, S. V. N. Vishwanathan, and Roman Garnett (Eds.). 5998--6008. https:\/\/proceedings.neurips.cc\/paper\/2017\/hash\/3f5ee243547dee91fbd053c1c4a845aa-Abstract.html"},{"key":"e_1_3_2_1_31_1","unstructured":"Bo Xiong Nico Potyka Trung-Kien Tran Mojtaba Nayyeri and Steffen Staab. [n. d.]. Faithiful Embeddings for EL Knowledge Bases. https:\/\/arxiv.org\/abs\/2201.09919v2"},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"publisher","DOI":"10.24963\/ijcai.2023\/374"},{"key":"e_1_3_2_1_33_1","unstructured":"Fernando Zhapa-Camacho and Robert Hoehndorf. 2023. CatE: Embedding ALC ontologies using category-theoretical semantics. (2023)."}],"event":{"name":"WWW '25: The ACM Web Conference 2025","location":"Sydney NSW Australia","acronym":"WWW '25","sponsor":["SIGWEB ACM Special Interest Group on Hypertext, Hypermedia, and Web"]},"container-title":["Proceedings of the ACM on Web Conference 2025"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3696410.3714672","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3696410.3714672","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,19]],"date-time":"2025-06-19T01:18:56Z","timestamp":1750295936000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3696410.3714672"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,4,22]]},"references-count":33,"alternative-id":["10.1145\/3696410.3714672","10.1145\/3696410"],"URL":"https:\/\/doi.org\/10.1145\/3696410.3714672","relation":{},"subject":[],"published":{"date-parts":[[2025,4,22]]},"assertion":[{"value":"2025-04-22","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}