{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,10]],"date-time":"2025-12-10T17:53:28Z","timestamp":1765389208231,"version":"3.46.0"},"publisher-location":"New York, NY, USA","reference-count":6,"publisher":"ACM","license":[{"start":{"date-parts":[[2026,12,10]],"date-time":"2026-12-10T00:00:00Z","timestamp":1796860800000},"content-version":"vor","delay-in-days":424,"URL":"http:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"DOI":"10.13039\/100000002","name":"NIH (National Institutes of Health)","doi-asserted-by":"publisher","award":["K25CA270079"],"award-info":[{"award-number":["K25CA270079"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"NSF (National Science Foundation)","doi-asserted-by":"publisher","award":["2341725"],"award-info":[{"award-number":["2341725"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2025,10,12]]},"DOI":"10.1145\/3765612.3767790","type":"proceedings-article","created":{"date-parts":[[2025,12,10]],"date-time":"2025-12-10T17:45:59Z","timestamp":1765388759000},"page":"1-1","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["AtlasCollect: A Single Cell Data Atlas platform and Unified Platform for Datasets Collection and Integration"],"prefix":"10.1145","author":[{"ORCID":"https:\/\/orcid.org\/0009-0005-3262-9561","authenticated-orcid":false,"given":"Sriram","family":"Boddeda","sequence":"first","affiliation":[{"name":"University of Oklahoma, Norman, OK, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0574-6656","authenticated-orcid":false,"given":"Marmar R.","family":"Moussa","sequence":"additional","affiliation":[{"name":"University of Oklahoma, Norman, OK, USA"}]},{"ORCID":"https:\/\/orcid.org\/0009-0009-3562-7587","authenticated-orcid":false,"given":"Olajumoke B.","family":"Oladapo","sequence":"additional","affiliation":[{"name":"University of Oklahoma, Norman, OK, USA"}]},{"ORCID":"https:\/\/orcid.org\/0009-0001-0276-6486","authenticated-orcid":false,"given":"Youla","family":"Ali","sequence":"additional","affiliation":[{"name":"School of Computer Science, University of Oklahoma, Norman, Oklahoma, USA"}]},{"ORCID":"https:\/\/orcid.org\/0009-0001-6674-3160","authenticated-orcid":false,"given":"Nicholas","family":"Louque","sequence":"additional","affiliation":[{"name":"School of Computer Science, University of Oklahoma, Norman, Oklahoma, USA"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-7995-6896","authenticated-orcid":false,"given":"Suryaveer","family":"Kapoor","sequence":"additional","affiliation":[{"name":"Stephenson School of Biomedical Engineering, University of Oklahoma, Norman, Oklahoma, USA"}]}],"member":"320","published-online":{"date-parts":[[2025,12,10]]},"reference":[{"key":"e_1_3_2_1_1_1","volume-title":"Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nature biotechnology 36, 5","author":"Butler Andrew","year":"2018","unstructured":"Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, and Rahul Satija. 2018. Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nature biotechnology 36, 5 (2018), 411\u2013420."},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1101\/461954"},{"key":"e_1_3_2_1_3_1","volume-title":"The sequence read archive. Nucleic acids research 39, suppl_1","author":"Leinonen Rasko","year":"2010","unstructured":"Rasko Leinonen, Hideaki Sugawara, Martin Shumway, and International Nucleotide Sequence Database Collaboration. 2010. The sequence read archive. Nucleic acids research 39, suppl_1 (2010), D19\u2013D21."},{"key":"e_1_3_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2021.0051"},{"key":"e_1_3_2_1_5_1","volume-title":"Spatial reconstruction of single-cell gene expression data. Nature biotechnology 33, 5","author":"Satija Rahul","year":"2015","unstructured":"Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, and Aviv Regev. 2015. Spatial reconstruction of single-cell gene expression data. Nature biotechnology 33, 5 (2015), 495\u2013502."},{"key":"e_1_3_2_1_6_1","volume-title":"Comprehensive integration of single-cell data. cell 177, 7","author":"Stuart Tim","year":"2019","unstructured":"Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, and Rahul Satija. 2019. Comprehensive integration of single-cell data. cell 177, 7 (2019), 1888\u20131902."}],"event":{"name":"BCB '25: 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","location":"Element Philadelphia Downtown Philadelphia PA USA","acronym":"BCB '25","sponsor":["SIGBio ACM Special Interest Group on Bioinformatics"]},"container-title":["Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3765612.3767790","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3765612.3767790","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,12,10]],"date-time":"2025-12-10T17:49:17Z","timestamp":1765388957000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3765612.3767790"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10,12]]},"references-count":6,"alternative-id":["10.1145\/3765612.3767790","10.1145\/3765612"],"URL":"https:\/\/doi.org\/10.1145\/3765612.3767790","relation":{},"subject":[],"published":{"date-parts":[[2025,10,12]]},"assertion":[{"value":"2025-12-10","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}