{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,18]],"date-time":"2025-06-18T04:19:47Z","timestamp":1750220387707,"version":"3.41.0"},"publisher-location":"New York, NY, USA","reference-count":25,"publisher":"ACM","license":[{"start":{"date-parts":[[2021,8,14]],"date-time":"2021-08-14T00:00:00Z","timestamp":1628899200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.acm.org\/publications\/policies\/copyright_policy#Background"}],"funder":[{"name":"FCT","award":["PTDC\/CCI-BIO\/28685\/2017, IDB\/00408\/2020, ref. UIDP\/00408\/2020, SFRH\/BD\/128840\/2017, 2020.05393.BD"],"award-info":[{"award-number":["PTDC\/CCI-BIO\/28685\/2017, IDB\/00408\/2020, ref. UIDP\/00408\/2020, SFRH\/BD\/128840\/2017, 2020.05393.BD"]}]}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2021,8,14]]},"DOI":"10.1145\/3447548.3470805","type":"proceedings-article","created":{"date-parts":[[2021,8,12]],"date-time":"2021-08-12T06:12:03Z","timestamp":1628748723000},"page":"4029-4030","update-policy":"https:\/\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["Creating Recommender Systems Datasets in Scientific Fields"],"prefix":"10.1145","author":[{"given":"Marcia","family":"Barros","sequence":"first","affiliation":[{"name":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"}]},{"given":"Francisco M.","family":"Couto","sequence":"additional","affiliation":[{"name":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"}]},{"given":"Matilde","family":"Pato","sequence":"additional","affiliation":[{"name":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"}]},{"given":"Pedro","family":"Ruas","sequence":"additional","affiliation":[{"name":"LASIGE, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"}]}],"member":"320","published-online":{"date-parts":[[2021,8,14]]},"reference":[{"key":"e_1_3_2_1_1_1","volume-title":"A Drug Recommendation System (Dr. S) for cancer cell lines. arXiv preprint arXiv:1912.11548","author":"Balvert Marleen","year":"2019","unstructured":"Marleen Balvert , Georgios Patoulidis , Andrew Patti , Timo M Deist , Christine Eyler , Bas E Dutilh , Alexander Sch\u00f6nhuth , and David Craft . 2019. A Drug Recommendation System (Dr. S) for cancer cell lines. arXiv preprint arXiv:1912.11548 ( 2019 ). Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M Deist, Christine Eyler, Bas E Dutilh, Alexander Sch\u00f6nhuth, and David Craft. 2019. A Drug Recommendation System (Dr. S) for cancer cell lines. arXiv preprint arXiv:1912.11548 (2019)."},{"key":"e_1_3_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2019.2958002"},{"key":"e_1_3_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13321-021-00495-2"},{"key":"e_1_3_2_1_4_1","unstructured":"Marcia Afonso Barros Andre Lamurias Diana F Sousa Pedro Ruas and Francisco M Couto. 2020. COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. (2020). Marcia Afonso Barros Andre Lamurias Diana F Sousa Pedro Ruas and Francisco M Couto. 2020. COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. (2020)."},{"key":"e_1_3_2_1_5_1","volume-title":"Exploiting personalized information for reagent selection in drug design. Drug discovery today","author":"Bostr\u00f6m Jonas","year":"2011","unstructured":"Jonas Bostr\u00f6m , Niklas Falk , and Christian Tyrchan . 2011. Exploiting personalized information for reagent selection in drug design. Drug discovery today , Vol. 16 , 5--6 ( 2011 ), 181--187. Jonas Bostr\u00f6m, Niklas Falk, and Christian Tyrchan. 2011. Exploiting personalized information for reagent selection in drug design. Drug discovery today , Vol. 16, 5--6 (2011), 181--187."},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13321-018-0312-9"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1186\/2041-1480-3-14"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btz504"},{"key":"e_1_3_2_1_9_1","volume-title":"Named entity recognition for electronic health records: a comparison of rule-based and machine learning approaches. arXiv preprint arXiv:1903.03985","author":"Gorinski Philip John","year":"2019","unstructured":"Philip John Gorinski , Honghan Wu , Claire Grover , Richard Tobin , Conn Talbot , Heather Whalley , Cathie Sudlow , William Whiteley , and Beatrice Alex . 2019. Named entity recognition for electronic health records: a comparison of rule-based and machine learning approaches. arXiv preprint arXiv:1903.03985 ( 2019 ). Philip John Gorinski, Honghan Wu, Claire Grover, Richard Tobin, Conn Talbot, Heather Whalley, Cathie Sudlow, William Whiteley, and Beatrice Alex. 2019. Named entity recognition for electronic health records: a comparison of rule-based and machine learning approaches. arXiv preprint arXiv:1903.03985 (2019)."},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13321-018-0303-x"},{"key":"e_1_3_2_1_11_1","volume-title":"Bidirectional LSTM-CRF models for sequence tagging. arXiv preprint arXiv:1508.01991","author":"Huang Zhiheng","year":"2015","unstructured":"Zhiheng Huang , Wei Xu , and Kai Yu. 2015. Bidirectional LSTM-CRF models for sequence tagging. arXiv preprint arXiv:1508.01991 ( 2015 ). Zhiheng Huang, Wei Xu, and Kai Yu. 2015. Bidirectional LSTM-CRF models for sequence tagging. arXiv preprint arXiv:1508.01991 (2015)."},{"key":"e_1_3_2_1_12_1","volume-title":"Identification of potent orally active factor Xa inhibitors based on conjugation strategy and application of predictable fragment recommender system. Bioorganic & medicinal chemistry","author":"Ishihara Tsukasa","year":"2015","unstructured":"Tsukasa Ishihara , Yuji Koga , Yoshiyuki Iwatsuki , and Fukushi Hirayama . 2015. Identification of potent orally active factor Xa inhibitors based on conjugation strategy and application of predictable fragment recommender system. Bioorganic & medicinal chemistry , Vol. 23 , 2 ( 2015 ), 277--289. Tsukasa Ishihara, Yuji Koga, Yoshiyuki Iwatsuki, and Fukushi Hirayama. 2015. Identification of potent orally active factor Xa inhibitors based on conjugation strategy and application of predictable fragment recommender system. Bioorganic & medicinal chemistry , Vol. 23, 2 (2015), 277--289."},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"publisher","DOI":"10.1109\/ACCESS.2019.2920708"},{"key":"e_1_3_2_1_14_1","volume-title":"PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC bioinformatics","author":"Lamurias Andre","year":"2019","unstructured":"Andre Lamurias , Pedro Ruas , and Francisco M Couto . 2019. PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC bioinformatics , Vol. 20 , 1 ( 2019 ), 1--12. Andre Lamurias, Pedro Ruas, and Francisco M Couto. 2019. PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC bioinformatics , Vol. 20, 1 (2019), 1--12."},{"key":"e_1_3_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btt474"},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"crossref","first-page":"1234","DOI":"10.1093\/bioinformatics\/btz682","article-title":"BioBERT: a pre-trained biomedical language representation model for biomedical text mining","volume":"36","author":"Lee Jinhyuk","year":"2020","unstructured":"Jinhyuk Lee , Wonjin Yoon , Sungdong Kim , Donghyeon Kim , Sunkyu Kim , Chan Ho So , and Jaewoo Kang . 2020 . BioBERT: a pre-trained biomedical language representation model for biomedical text mining . Bioinformatics , Vol. 36 , 4 (2020), 1234 -- 1240 . Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, and Jaewoo Kang. 2020. BioBERT: a pre-trained biomedical language representation model for biomedical text mining. Bioinformatics , Vol. 36, 4 (2020), 1234--1240.","journal-title":"Bioinformatics"},{"volume-title":"Mining of massive datasets","author":"Rajaraman Anand","key":"e_1_3_2_1_17_1","unstructured":"Anand Rajaraman and Jeffrey David Ullman . 2011. Mining of massive datasets . Cambridge University Press . Anand Rajaraman and Jeffrey David Ullman. 2011. Mining of massive datasets .Cambridge University Press."},{"volume-title":"Recommender systems handbook","author":"Ricci Francesco","key":"e_1_3_2_1_18_1","unstructured":"Francesco Ricci , Lior Rokach , and Bracha Shapira . 2015. Recommender systems: introduction and challenges . In Recommender systems handbook . Springer , 1--34. Francesco Ricci, Lior Rokach, and Bracha Shapira. 2015. Recommender systems: introduction and challenges. In Recommender systems handbook . Springer, 1--34."},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13321-020-00461-4"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1063\/1.5016210"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1109\/EHB.2013.6707249"},{"key":"e_1_3_2_1_22_1","volume-title":"Recommender systems in antiviral drug discovery. ACS omega","author":"Sosnina Ekaterina A","year":"2020","unstructured":"Ekaterina A Sosnina , Sergey Sosnin , Anastasia A Nikitina , Ivan Nazarov , Dmitry I Osolodkin , and Maxim V Fedorov . 2020. Recommender systems in antiviral drug discovery. ACS omega , Vol. 5 , 25 ( 2020 ), 15039--15051. Ekaterina A Sosnina, Sergey Sosnin, Anastasia A Nikitina, Ivan Nazarov, Dmitry I Osolodkin, and Maxim V Fedorov. 2020. Recommender systems in antiviral drug discovery. ACS omega , Vol. 5, 25 (2020), 15039--15051."},{"key":"e_1_3_2_1_23_1","volume-title":"A literature review on medicine recommender systems. (IJACSA) International Journal of Advanced Computer Science and Applications","author":"Stark Benjamin","year":"2019","unstructured":"Benjamin Stark , Constanze Knahl , Mert Aydin , and Karim Elish . 2019. A literature review on medicine recommender systems. (IJACSA) International Journal of Advanced Computer Science and Applications , Vol. 10 , 8 ( 2019 ). Benjamin Stark, Constanze Knahl, Mert Aydin, and Karim Elish. 2019. A literature review on medicine recommender systems. (IJACSA) International Journal of Advanced Computer Science and Applications , Vol. 10, 8 (2019)."},{"key":"e_1_3_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty452"},{"key":"e_1_3_2_1_25_1","volume-title":"et almbox","author":"Wang Lucy Lu","year":"2020","unstructured":"Lucy Lu Wang , Kyle Lo , Yoganand Chandrasekhar , Russell Reas , Jiangjiang Yang , Darrin Eide , Kathryn Funk , Rodney Kinney , Ziyang Liu , William Merrill , et almbox . 2020 . Cord-19: The covid-19 open research dataset. ArXiv ( 2020). Lucy Lu Wang, Kyle Lo, Yoganand Chandrasekhar, Russell Reas, Jiangjiang Yang, Darrin Eide, Kathryn Funk, Rodney Kinney, Ziyang Liu, William Merrill, et almbox. 2020. Cord-19: The covid-19 open research dataset. ArXiv (2020)."}],"event":{"name":"KDD '21: The 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining","sponsor":["SIGMOD ACM Special Interest Group on Management of Data","SIGKDD ACM Special Interest Group on Knowledge Discovery in Data"],"location":"Virtual Event Singapore","acronym":"KDD '21"},"container-title":["Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery &amp; Data Mining"],"original-title":[],"link":[{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3447548.3470805","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/dl.acm.org\/doi\/pdf\/10.1145\/3447548.3470805","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T20:18:32Z","timestamp":1750191512000},"score":1,"resource":{"primary":{"URL":"https:\/\/dl.acm.org\/doi\/10.1145\/3447548.3470805"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,14]]},"references-count":25,"alternative-id":["10.1145\/3447548.3470805","10.1145\/3447548"],"URL":"https:\/\/doi.org\/10.1145\/3447548.3470805","relation":{},"subject":[],"published":{"date-parts":[[2021,8,14]]},"assertion":[{"value":"2021-08-14","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}