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The molecular mechanisms driving this heterogeneity have yet to be elucidated. Furthermore, OA disproportionately impacts females, suggesting a need for identifying female-specific therapeutic targets. We profiled the skeletal muscle transcriptome in females with end-stage OA ( n = 20) undergoing total knee or hip arthroplasty using RNA-Seq. Single-gene differential expression (DE) analyses tested for DE genes between skeletal muscle overlaying the surgical (SX) joint and muscle from the contralateral (CTRL) leg. Network analyses were performed using Pathway-Level Information ExtractoR (PLIER) to summarize genes into latent variables (LVs), i.e., gene circuits, and link them to biological pathways. LV differences in SX versus CTRL muscle and across sources of muscle tissue (vastus medialis, vastus lateralis, or tensor fascia latae) were determined with ANOVA. Linear models tested for associations between LVs and muscle phenotype on the SX side (inflammation, function, and integrity). DE analysis revealed 360 DE genes (|Log<jats:sub>2<\/jats:sub>fold-difference| \u2265 1, FDR \u2264 0.05) between the SX and CTRL limbs, many associated with inflammation and lipid metabolism. PLIER analyses revealed circuits associated with protein degradation and fibro-adipogenic cell gene expression. Muscle inflammation and function were linked to an LV associated with endothelial cell gene expression highlighting a potential regulatory role of endothelial cells within skeletal muscle. These findings may provide insight into potential therapeutic targets to improve OA rehabilitation before and\/or following total joint replacement.<\/jats:p>","DOI":"10.1152\/physiolgenomics.00092.2022","type":"journal-article","created":{"date-parts":[[2022,10,24]],"date-time":"2022-10-24T08:00:57Z","timestamp":1666598457000},"page":"501-513","update-policy":"https:\/\/doi.org\/10.1152\/aps-crossmark-policy","source":"Crossref","is-referenced-by-count":15,"title":["Muscle transcriptomic circuits linked to periarticular physiology in end-stage osteoarthritis"],"prefix":"10.1152","volume":"54","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8003-562X","authenticated-orcid":false,"given":"Devin J.","family":"Drummer","sequence":"first","affiliation":[{"name":"UAB Center for Exercise Medicine, University of Alabama at Birmingham, Birmingham, Alabama"},{"name":"Department of Cell, Developmental, and Integrative Biology, University of Alabama at Birmingham, Birmingham, 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