{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,5]],"date-time":"2026-05-05T07:53:15Z","timestamp":1777967595958,"version":"3.51.4"},"reference-count":58,"publisher":"Wiley","issue":"1","license":[{"start":{"date-parts":[[2024,5,6]],"date-time":"2024-05-06T00:00:00Z","timestamp":1714953600000},"content-version":"vor","delay-in-days":126,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2017M610659"],"award-info":[{"award-number":["2017M610659"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2018T111113"],"award-info":[{"award-number":["2018T111113"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100007128","name":"Natural Science Foundation of Shaanxi Province","doi-asserted-by":"publisher","award":["2022JQ-158"],"award-info":[{"award-number":["2022JQ-158"]}],"id":[{"id":"10.13039\/501100007128","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011136","name":"State Key Laboratory of Veterinary Etiological Biology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100011136","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011135","name":"Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences","doi-asserted-by":"publisher","award":["SKLVEB2016KFKT014"],"award-info":[{"award-number":["SKLVEB2016KFKT014"]}],"id":[{"id":"10.13039\/501100011135","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012226","name":"Fundamental Research Funds for the Central Universities","doi-asserted-by":"publisher","award":["2452019053"],"award-info":[{"award-number":["2452019053"]}],"id":[{"id":"10.13039\/501100012226","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Transboundary and Emerging Diseases"],"published-print":{"date-parts":[[2024,1]]},"abstract":"<jats:p>Salmonellosis is one of the important bacterial infectious diseases affecting the health of pigeons. Heretofore, the epidemiological characteristics of <jats:italic>Salmonella<\/jats:italic> in pigeon populations in China remain largely unclear. The present study investigated the antimicrobial resistance and genomic characteristics of <jats:italic>Salmonella<\/jats:italic> isolates in pigeons in different regions of China from 2022 to 2023. Thirty\u2010two <jats:italic>Salmonella<\/jats:italic> isolates were collected and subjected to 24 different antimicrobial agents, representing nine categories. The results showed that these isolates were highly resistant to cefazolin (100%), gentamicin (100%), tobramycin (100%), and amikacin (100%). Three or more types of antimicrobial resistance were present in 90.62% of the isolates, indicating multidrug resistance. Furthermore, using whole genome sequencing technology, we analyzed the profiles of serotypes, multilocus sequence typing, virulence genes, antimicrobial resistance genes, and plasmid replicons and constructed phylogenetic genomics to determine the epidemiological correlation among these isolates. All strains belonged to <jats:italic>Salmonella<\/jats:italic> Typhimurium var. Copenhagen and exhibited five antimicrobial resistance genes and more than 150 <jats:italic>Salmonella<\/jats:italic> virulence genes. Moreover, each isolate contained both the IncFIB(S) and IncFII(S) plasmids. In addition, phylogenetic analysis showed that all isolates were very close to each other, and isolates from the same region clustered in the same branch. Overall, our findings provide the first evidence for the epidemiological characteristics of <jats:italic>Salmonella<\/jats:italic> in pigeons of China, highlighting the importance of preventing salmonellosis in pigeons.<\/jats:p>","DOI":"10.1155\/2024\/3315678","type":"journal-article","created":{"date-parts":[[2024,5,7]],"date-time":"2024-05-07T03:05:10Z","timestamp":1715051110000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Antimicrobial Resistance and Genomic Characterization of <i>Salmonella<\/i> Isolated from Pigeons in China"],"prefix":"10.1155","volume":"2024","author":[{"given":"Yuhua","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zheng","family":"Lu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haoyu","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shuangyu","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hong","family":"Zhuang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8333-9891","authenticated-orcid":false,"given":"Ruichao","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Weibo","family":"Zheng","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hongwei","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peng","family":"Xie","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yibin","family":"Hu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Caiyuan","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qian","family":"Mao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leilei","family":"Sun","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shanshan","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wenhui","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fang","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2641-1759","authenticated-orcid":false,"given":"Wei","family":"Pan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1210-9922","authenticated-orcid":false,"given":"Chengbao","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2024,5,6]]},"reference":[{"key":"e_1_2_10_1_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.cimid.2023.101973"},{"key":"e_1_2_10_2_2","doi-asserted-by":"publisher","DOI":"10.1128\/spectrum.01257\u201022"},{"key":"e_1_2_10_3_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0277203"},{"key":"e_1_2_10_4_2","doi-asserted-by":"publisher","DOI":"10.1111\/zph.12328"},{"key":"e_1_2_10_5_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2020.103601"},{"key":"e_1_2_10_6_2","doi-asserted-by":"publisher","DOI":"10.1089\/vbz.2017.2174"},{"key":"e_1_2_10_7_2","doi-asserted-by":"publisher","DOI":"10.1080\/03079457.2013.822468"},{"key":"e_1_2_10_8_2","doi-asserted-by":"publisher","DOI":"10.14715\/cmb\/2016.62.14.8"},{"key":"e_1_2_10_9_2","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.70.5.2249\u20102255.2002"},{"key":"e_1_2_10_10_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetimm.2014.08.015"},{"key":"e_1_2_10_11_2","first-page":"4880","article-title":"Isolation and Identification of pigeon-derived Salmonella typhimurium and pathogenic analysis","volume":"54","author":"Yang M. L.","year":"2023","journal-title":"Acta Veterinaria et Zootechnica Sinica"},{"key":"e_1_2_10_12_2","first-page":"3322","article-title":"Isolation, identification and analysis of serotype and drug resistance of Salmonella from pigeon in Shanghai","volume":"2016","author":"Liang D. M.","year":"2016","journal-title":"China Animal Husbandry & Veterinary Medicine"},{"key":"e_1_2_10_13_2","doi-asserted-by":"publisher","DOI":"10.1111\/tbed.13891"},{"key":"e_1_2_10_14_2","doi-asserted-by":"publisher","DOI":"10.1080\/030794500750047225"},{"key":"e_1_2_10_15_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2016.05.017"},{"key":"e_1_2_10_16_2","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics10101156"},{"key":"e_1_2_10_17_2","doi-asserted-by":"publisher","DOI":"10.1093\/nsr\/nwac269"},{"key":"e_1_2_10_18_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12864\u2010018\u20105137\u20104"},{"key":"e_1_2_10_19_2","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/bty560"},{"key":"e_1_2_10_20_2","doi-asserted-by":"publisher","DOI":"10.1089\/cmb.2012.0021"},{"key":"e_1_2_10_21_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00323\u201015"},{"key":"e_1_2_10_22_2","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.06094\u201011"},{"key":"e_1_2_10_23_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02412\u201014"},{"key":"e_1_2_10_24_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gky1080"},{"key":"e_1_2_10_25_2","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkac920"},{"key":"e_1_2_10_26_2","first-page":"2584","article-title":"Research progress on pigeon salmonellosis and prevention and control measures of its antibiotic substitutes","volume":"48","author":"Li X.","year":"2021","journal-title":"China Animal Husbandry & Veterinary Medicine"},{"key":"e_1_2_10_27_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.psj.2020.07.038"},{"key":"e_1_2_10_28_2","first-page":"252","article-title":"Report on Salmonella isolates submitted to the German National Veterinary Salmonella reference laboratory in the year 1999","volume":"115","author":"Dorn C.","year":"2002","journal-title":"Berliner Und Munchener Tierarztliche Wochenschrift"},{"key":"e_1_2_10_29_2","first-page":"48","article-title":"Isolation, identification and drug resistance analysis of Escherichia coli and Salmonella in Beijing pigeon meat","volume":"10","author":"Xie G. D.","year":"2019","journal-title":"Journal of Food Safety and Quality"},{"key":"e_1_2_10_30_2","doi-asserted-by":"publisher","DOI":"10.1089\/vbz.2011.0943"},{"key":"e_1_2_10_31_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2012.1347"},{"key":"e_1_2_10_32_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2023.110120"},{"key":"e_1_2_10_33_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2020.108790"},{"key":"e_1_2_10_34_2","doi-asserted-by":"publisher","DOI":"10.2147\/IDR.S301318"},{"key":"e_1_2_10_35_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.drup.2023.100989"},{"key":"e_1_2_10_36_2","doi-asserted-by":"publisher","DOI":"10.3389\/fpubh.2022.988317"},{"key":"e_1_2_10_37_2","doi-asserted-by":"publisher","DOI":"10.1038\/s41598\u2010022\u201014492\u20104"},{"key":"e_1_2_10_38_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.meegid.2023.105519"},{"key":"e_1_2_10_39_2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0100881"},{"key":"e_1_2_10_40_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00294\u2010023\u201001264\u20104"},{"key":"e_1_2_10_41_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12866\u2010023\u201002901\u20101"},{"key":"e_1_2_10_42_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365\u20102958.2007.05590.x"},{"key":"e_1_2_10_43_2","doi-asserted-by":"publisher","DOI":"10.1111\/1462\u20102920.13837"},{"key":"e_1_2_10_44_2","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2010.0651"},{"key":"e_1_2_10_45_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00203\u2010002\u20100424\u20104"},{"key":"e_1_2_10_46_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.48.10.4012\u20104015.2004"},{"key":"e_1_2_10_47_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2017.11.067"},{"key":"e_1_2_10_48_2","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.42.10.2661"},{"key":"e_1_2_10_49_2","doi-asserted-by":"publisher","DOI":"10.3390\/ijerph19095671"},{"key":"e_1_2_10_50_2","doi-asserted-by":"publisher","DOI":"10.1186\/s12864\u2010017\u20103954\u20105"},{"key":"e_1_2_10_51_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2005.10.030"},{"key":"e_1_2_10_52_2","doi-asserted-by":"publisher","DOI":"10.1007\/s00284\u2010018\u20101510\u20104"},{"key":"e_1_2_10_53_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2020.586934"},{"key":"e_1_2_10_54_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.96.13.7502"},{"key":"e_1_2_10_55_2","doi-asserted-by":"publisher","DOI":"10.1242\/dmm.009324"},{"key":"e_1_2_10_56_2","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365\u20102958.2001.02360.x"},{"key":"e_1_2_10_57_2","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2020.606541"},{"key":"e_1_2_10_58_2","doi-asserted-by":"publisher","DOI":"10.1016\/j.jinf.2003.11.001"}],"container-title":["Transboundary and Emerging Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/downloads.hindawi.com\/journals\/tbed\/2024\/3315678.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/downloads.hindawi.com\/journals\/tbed\/2024\/3315678.xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1155\/2024\/3315678","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,3]],"date-time":"2025-01-03T14:59:00Z","timestamp":1735916340000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1155\/2024\/3315678"}},"subtitle":[],"editor":[{"given":"Zongfu","family":"Wu","sequence":"additional","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2024,1]]},"references-count":58,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2024,1]]}},"alternative-id":["10.1155\/2024\/3315678"],"URL":"https:\/\/doi.org\/10.1155\/2024\/3315678","archive":["Portico"],"relation":{},"ISSN":["1865-1674","1865-1682"],"issn-type":[{"value":"1865-1674","type":"print"},{"value":"1865-1682","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,1]]},"assertion":[{"value":"2024-02-17","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2024-04-16","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2024-05-06","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"3315678"}}