{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"institution":[{"name":"American Association for Cancer Research"}],"indexed":{"date-parts":[[2025,11,26]],"date-time":"2025-11-26T12:44:45Z","timestamp":1764161085364,"version":"3.46.0"},"posted":{"date-parts":[[2023,6,2]]},"reference-count":0,"publisher":"American Association for Cancer Research (AACR)","license":[{"start":{"date-parts":[[2023,6,2]],"date-time":"2023-06-02T00:00:00Z","timestamp":1685664000000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"abstract":"<p>Comparison of COD-dipp ncMAPs with other studies. Because the COD-dipp ncMAPs are restricted to the 3-frame translation (3FT) of protein-coding genes, sequences from the literature were aligned to the same 3FT database for comparison purposes. The intersection is based on genomic coordinates to deal with sequences that partially match (i.e., longer, shorter, or partially overlapping). Because the Venn is generated by overlapping genomic coordinates of the ncMAPs, the original counts for each study are listed from left to right (i.e., on the right-hand side of panel C, the notation 29\/41 refers to 29 instances for Chong and colleagues 2020 and 41 for COD-dipp). <b>A,<\/b> Comparison with peptide-PRISM published ncMAPs at a 10% FDR. COD-dipp ncMAPs were restricted to 3 studies in common with Erhard and colleagues 2020. <b>B,<\/b> Comparison with peptide-PRISM published ncMAPs at a 1% FDR. COD-dipp ncMAPs were restricted to 3 studies in common with Erhard and colleagues 2020. <b>C,<\/b> Comparison of the atlas of ncMAPs revealed by COD-dipp to 3 previous studies.<\/p><\/jats:p>","DOI":"10.1158\/2326-6066.23283477","type":"posted-content","created":{"date-parts":[[2023,6,2]],"date-time":"2023-06-02T10:20:12Z","timestamp":1685701212000},"source":"Crossref","is-referenced-by-count":0,"title":["Figure 4 from The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I\u2013Associated Peptides"],"prefix":"10.1158","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3086-3742","authenticated-orcid":false,"given":"Georges","family":"Bedran","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1274-4966","authenticated-orcid":false,"given":"Hans-Christof","family":"Gasser","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8947-7793","authenticated-orcid":false,"given":"Kenneth","family":"Weke","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9237-156X","authenticated-orcid":false,"given":"Tongjie","family":"Wang","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2263-2493","authenticated-orcid":false,"given":"Dominika","family":"Bedran","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7296-025X","authenticated-orcid":false,"given":"Alexander","family":"Laird","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6849-7824","authenticated-orcid":false,"given":"Christophe","family":"Battail","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7301-3596","authenticated-orcid":false,"given":"Fabio Massimo","family":"Zanzotto","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1847-9393","authenticated-orcid":false,"given":"Catia","family":"Pesquita","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7749-5043","authenticated-orcid":false,"given":"H\u00e5kan","family":"Axelson","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3765-3075","authenticated-orcid":false,"given":"Ajitha","family":"Rajan","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9041-9988","authenticated-orcid":false,"given":"David J.","family":"Harrison","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3140-8469","authenticated-orcid":false,"given":"Aleksander","family":"Palkowski","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3419-7262","authenticated-orcid":false,"given":"Maciej","family":"Pawlik","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4456-3369","authenticated-orcid":false,"given":"Maciej","family":"Parys","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2230-7137","authenticated-orcid":false,"given":"J. 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