{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,13]],"date-time":"2026-07-13T01:13:49Z","timestamp":1783905229990,"version":"3.55.0"},"reference-count":209,"publisher":"Walter de Gruyter GmbH","license":[{"start":{"date-parts":[[2026,7,7]],"date-time":"2026-07-07T00:00:00Z","timestamp":1783382400000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Benef. Microbes"],"published-print":{"date-parts":[[2026,7,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Antibiotics remain indispensable for the management of infectious diseases; however, their use inevitably perturbs the gut microbiota. Advances in metagenomics and multiomics approaches have demonstrated that antibiotic exposure profoundly disrupts microbial diversity and community structure, leading to the depletion of key commensals, the expansion of opportunistic pathogens, metabolic dysfunction, and the emergence of antimicrobial resistance. These alterations are increasingly associated with a broad spectrum of dysbiosis-related diseases (DRDs), encompassing metabolic, neuropsychiatric, and immune-mediated disorders. To mitigate or reverse antibiotic-induced microbial imbalances, various microbiota-targeted interventions have emerged as promising alternatives or complementary approaches. These include dietary phytochemicals (such as polyphenols, alkaloids, and organosulfur compounds), probiotics, prebiotics, synbiotics, postbiotics, bacteriophage therapy, and faecal microbiota transplantation (FMT). Evidence from\n                    <jats:italic>in vitro<\/jats:italic>\n                    and animal studies has provided mechanistic insights into how these interventions modulate microbial composition and function; however, clinical evidence varies across intervention type. This review summarizes the composition and functional roles of the gut microbiota, outlines the consequences of antibiotic exposure, and provides an overview of the underlying mechanisms, recent evidence, and potential applications of microbiota-targeted interventions in preserving intestinal homeostasis. This review aims to provide a theoretical basis and reference framework for the development of safer and more effective alternatives or adjuncts to antibiotic therapy.\n                  <\/jats:p>","DOI":"10.1163\/18762891-bja00123","type":"journal-article","created":{"date-parts":[[2026,7,13]],"date-time":"2026-07-13T00:44:28Z","timestamp":1783903468000},"page":"1-28","source":"Crossref","is-referenced-by-count":0,"title":["Harnessing microbial modulators to mitigate antibiotic-induced gut dysbiosis: from phytochemicals to faecal microbiota transplantation"],"prefix":"10.1163","author":[{"given":"Q.","family":"Wang","sequence":"first","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."},{"name":"Department of Gastroenterology, the First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"W.","family":"Zhong","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."},{"name":"Department of Gastroenterology, the First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H.","family":"Huang","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."},{"name":"Department of Gastroenterology, the First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"X.","family":"Yang","sequence":"additional","affiliation":[{"name":"Pengzhou Branch of the First Affiliated Hospital of Chengdu Medical College, Pengzhou Second People\u2019s Hospital, Chengdu, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"X.","family":"Liu","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Y.","family":"Ren","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"F.","family":"He","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."},{"name":"Department of Gastroenterology, the First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Li","sequence":"additional","affiliation":[{"name":"https:\/\/dx.doi.org\/74787Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."},{"name":"Department of Gastroenterology, the First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, China P.R."}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"374","reference":[{"key":"R000001","series-title":"Current Pharmaceutical Biotechnology","first-page":"28","article-title":"Phage therapy pharmacology","volume":"11","author":"Abedon, S.T.","unstructured":"Abedon, S.T. and Thomas-Abedon, C., 2010. 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Patents in the field of probiotics, prebiotics, synbiotics: a review. Journal of Food: Microbiology, Safety and Hygiene 01. https:\/\/doi.org\/10.4172\/2476-2059.1000111"},{"key":"R000046","series-title":"Cell","article-title":"Human gut mycobiota tune immunity via CARD9-dependent induction of anti-fungal IgG antibodies","volume":"184","author":"Doron, I.","unstructured":"Doron, I., Leonardi, I., Li, X.V., Fiers, W.D., Semon, A., Bialt-DeCelie, M., Migaud, M., Gao, I.H., Lin, W.-Y., Kusakabe, T., Puel, A. and Iliev, I.D., 2021. Human gut mycobiota tune immunity via CARD9-dependent induction of anti-fungal IgG antibodies. Cell 184: 1017-1031.e1014. https:\/\/doi.org\/10.1016\/j.cell.2021.01.016"},{"key":"R000047","series-title":"Journal of Agricultural and Food Chemistry","first-page":"779","article-title":"Supplementation of inulin with various degree of polymerization ameliorates liver injury and gut microbiota dysbiosis in high fat-fed obese mice","volume":"68","author":"Du, H.","unstructured":"Du, H., Zhao, A., Wang, Q., Yang, X. and Ren, D., 2020. Supplementation of inulin with various degree of polymerization ameliorates liver injury and gut microbiota dysbiosis in high fat-fed obese mice. Journal of Agricultural and Food Chemistry 68: 779-787. https:\/\/doi.org\/10.1021\/acs.jafc.9b06571"},{"key":"R000048","series-title":"Nature Immunology","first-page":"654","article-title":"Resident viruses and their interactions with the immune system","volume":"14","author":"Duerkop, B.A.","unstructured":"Duerkop, B.A. and Hooper, L.V., 2013. Resident viruses and their interactions with the immune system. 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The health advantage of a vegan diet: exploring the gut microbiota connection. Nutrients 6: 4822-4838. https:\/\/doi.org\/10.3390\/nu6114822"},{"key":"R000062","series-title":"Journal of Medical Microbiology","first-page":"129","article-title":"Effect of phage infection on toxin production by Clostridium difficile","volume":"54","author":"Goh, S.","unstructured":"Goh, S., Chang, B.J. and Riley, T.V., 2005. Effect of phage infection on toxin production by Clostridium difficile. Journal of Medical Microbiology 54: 129-135. https:\/\/doi.org\/10.1099\/jmm.0.45821-0"},{"key":"R000063","series-title":"Frontiers in Microbiology","article-title":"Perspectives of phage therapy in non-bacterial infections","volume":"9","author":"Go\u0301rski, A.","unstructured":"Go\u0301rski, A., Bollyky, P.L., Przybylski, M., Borysowski, J., Mie\u0328dzybrodzki, R., Jon\u0301czyk-Matysiak, E. and Weber-Da\u0328browska, B., 2018. Perspectives of phage therapy in non-bacterial infections. 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Lyophilised oral faecal microbiota transplantation for ulcerative colitis (LOTUS): a randomised, double-blind, placebo-controlled trial. The Lancet Gastroenterology and Hepatology 7: 141-151. https:\/\/doi.org\/10.1016\/S2468-1253(21)00400-3"},{"key":"R000068","series-title":"Annual Review of Medicine","first-page":"197","article-title":"Phage therapy for antibiotic-resistant bacterial infections","volume":"73","author":"Hatfull, G.F.","unstructured":"Hatfull, G.F., Dedrick, R.M. and Schooley, R.T., 2022. Phage therapy for antibiotic-resistant bacterial infections. 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ISME Journal 1: 56-66. https:\/\/doi.org\/10.1038\/ismej.2007.3"},{"key":"R000082","series-title":"The Lancet Gastroenterology and Hepatology","first-page":"17","article-title":"Faecal microbiota transplantation versus placebo for moderate-to-severe irritable bowel syndrome: a double-blind, randomised, placebo-controlled, parallel-group, single-centre trial","volume":"3","author":"Johnsen, P.H.","unstructured":"Johnsen, P.H., Hilp\u00fcsch, F., Cavanagh, J.P., Leikanger, I.S., Kolstad, C., Valle, P.C. and Goll, R., 2018. Faecal microbiota transplantation versus placebo for moderate-to-severe irritable bowel syndrome: a double-blind, randomised, placebo-controlled, parallel-group, single-centre trial. The Lancet Gastroenterology and Hepatology 3: 17-24. https:\/\/doi.org\/10.1016\/S2468-1253(17)30338-2"},{"key":"R000083","series-title":"Annals of Internal Medicine","first-page":"940","article-title":"Fecal microbiota transplantation versus vancomycin for primary Clostridioides difficile infection: a randomized controlled trial","volume":"178","author":"Juul, F.E.","unstructured":"Juul, F.E., Bretthauer, M., Johnsen, P.H., Samy, F., Tonby, K., Berdal, J.E., Hoff, D.A.L., Ofstad, E.H., Abraham, A., Seip, B., Wiig, H., Rognstad, \u00d8.B., Glad, I.F., Valeur, J., Nissen-Lie, A.E., Ness-Jensen, E., Lund, K.M.A., Skjevling, L.K., Hanevik, K., Skudal, H., Melsom, E.J., Boyar, R., Cooper, T.J., Ranheim, T.E., Riise, E.M., Adami, H.O., Kalager, M., L\u00f8berg, M. and Garborg, K.K., 2025. Fecal microbiota transplantation versus vancomycin for primary Clostridioides difficile infection: a randomized controlled trial. Annals of Internal Medicine 178: 940-947. https:\/\/doi.org\/10.7326\/annals-24-03285"},{"key":"R000084","series-title":"American Journal of Clinical Nutrition","first-page":"534","article-title":"Early differences in fecal microbiota composition in children may predict overweight","volume":"87","author":"Kalliom\u00e4ki, M.","unstructured":"Kalliom\u00e4ki, M., Collado, M.C., Salminen, S. and Isolauri, E., 2008. Early differences in fecal microbiota composition in children may predict overweight. American Journal of Clinical Nutrition 87: 534-538. https:\/\/doi.org\/10.1093\/ajcn\/87.3.534"},{"key":"R000085","series-title":"Nutrients","article-title":"Effects of synbiotic supplementation on chronic inflammation and the gut microbiota in obese patients with type 2 diabetes mellitus: a randomized controlled study","volume":"13","author":"Kanazawa, A.","unstructured":"Kanazawa, A., Aida, M., Yoshida, Y., Kaga, H., Katahira, T., Suzuki, L., Tamaki, S., Sato, J., Goto, H., Azuma, K., Shimizu, T., Takahashi, T., Yamashiro, Y. and Watada, H., 2021. Effects of synbiotic supplementation on chronic inflammation and the gut microbiota in obese patients with type 2 diabetes mellitus: a randomized controlled study. Nutrients 13. https:\/\/doi.org\/10.3390\/nu13020558"},{"key":"R000086","series-title":"Microbiome","article-title":"Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study","volume":"5","author":"Kang, D.W.","unstructured":"Kang, D.W., Adams, J.B., Gregory, A.C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E.L., Roux, S., Sadowsky, M.J., Lipson, K.S., Sullivan, M.B., Caporaso, J.G. and Krajmalnik-Brown, R., 2017. Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study. 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Obesity 18: 190-195. https:\/\/doi.org\/10.1038\/oby.2009.167"},{"key":"R000164","series-title":"Gastroenterology","article-title":"Synbiotics alter fecal microbiomes, but not liver fat or fibrosis, in a randomized trial of patients with nonalcoholic fatty liver disease","volume":"158","author":"Scorletti, E.","unstructured":"Scorletti, E., Afolabi, P.R., Miles, E.A., Smith, D.E., Almehmadi, A., Alshathry, A., Childs, C.E., Del Fabbro, S., Bilson, J., Moyses, H.E., Clough, G.F., Sethi, J.K., Patel, J., Wright, M., Breen, D.J., Peebles, C., Darekar, A., Aspinall, R., Fowell, A.J., Dowman, J.K., Nobili, V., Targher, G., Delzenne, N.M., Bindels, L.B., Calder, P.C. and Byrne, C.D., 2020. Synbiotics alter fecal microbiomes, but not liver fat or fibrosis, in a randomized trial of patients with nonalcoholic fatty liver disease. Gastroenterology 158: 1597-1610.e1597. https:\/\/doi.org\/10.1053\/j.gastro.2020.01.031"},{"key":"R000165","series-title":"Pharmacological Research","first-page":"52","article-title":"The influence of diet on the gut microbiota","volume":"69","author":"Scott, K.P.","unstructured":"Scott, K.P., Gratz, S.W., Sheridan, P.O., Flint, H.J. and Duncan, S.H., 2013. The influence of diet on the gut microbiota. Pharmacological Research 69: 52-60. https:\/\/doi.org\/10.1016\/j.phrs.2012.10.020"},{"key":"R000166","series-title":"Journal of Nutrition","first-page":"3577","article-title":"The clinical importance of the metabolite equol-a clue to the effectiveness of soy and its isoflavones","volume":"132","author":"Setchell, K.D.","unstructured":"Setchell, K.D., Brown, N.M. and Lydeking-Olsen, E., 2002. The clinical importance of the metabolite equol-a clue to the effectiveness of soy and its isoflavones. Journal of Nutrition 132: 3577-3584. https:\/\/doi.org\/10.1093\/jn\/132.12.3577"},{"key":"R000167","series-title":"World Journal of Gastroenterology","first-page":"6025","article-title":"Allicin as add-on therapy for Helicobacter pylori infection: A systematic review and meta-analysis","volume":"25","author":"Si, X.B.","unstructured":"Si, X.B., Zhang, X.M., Wang, S., Lan, Y., Zhang, S. and Huo, L.Y., 2019. Allicin as add-on therapy for Helicobacter pylori infection: A systematic review and meta-analysis. World Journal of Gastroenterology 25: 6025-6040. https:\/\/doi.org\/10.3748\/wjg.v25.i39.6025"},{"key":"R000168","series-title":"Alimentary Pharmacology and Therapeutics","first-page":"158","article-title":"Review article: dietary fibre-microbiota interactions","volume":"42","author":"Simpson, H.L.","unstructured":"Simpson, H.L. and Campbell, B.J., 2015. Review article: dietary fibre-microbiota interactions. Alimentary Pharmacology and Therapeutics 42: 158-179. https:\/\/doi.org\/10.1111\/apt.13248"},{"key":"R000169","series-title":"Journal of Nutritional Biochemistry","first-page":"142","article-title":"Inulin fiber dose-dependently modulates energy balance, glucose tolerance, gut microbiota, hormones and diet preference in high-fat-fed male rats","volume":"59","author":"Singh, A.","unstructured":"Singh, A., Zapata, R.C., Pezeshki, A., Reidelberger, R.D. and Chelikani, P.K., 2018. Inulin fiber dose-dependently modulates energy balance, glucose tolerance, gut microbiota, hormones and diet preference in high-fat-fed male rats. Journal of Nutritional Biochemistry 59: 142-152. https:\/\/doi.org\/10.1016\/j.jnutbio.2018.05.017"},{"key":"R000170","series-title":"Annals of Internal Medicine","first-page":"483","article-title":"Long-term persistence of resistant Enterococcus species after antibiotics to eradicate Helicobacter pylori","volume":"139","author":"Sj\u00f6lund, M.","unstructured":"Sj\u00f6lund, M., Wreiber, K., Andersson, D.I., Blaser, M.J. and Engstrand, L., 2003. Long-term persistence of resistant Enterococcus species after antibiotics to eradicate Helicobacter pylori. Annals of Internal Medicine 139: 483-487. https:\/\/doi.org\/10.7326\/0003-4819-139-6-200309160-00011"},{"key":"R000171","series-title":"Nature","first-page":"241","article-title":"Ecology drives a global network of gene exchange connecting the human microbiome","volume":"480","author":"Smillie, C.S.","unstructured":"Smillie, C.S., Smith, M.B., Friedman, J., Cordero, O.X., David, L.A. and Alm, E.J., 2011. Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480: 241-244. https:\/\/doi.org\/10.1038\/nature10571"},{"key":"R000172","series-title":"Journal of Dairy Science","first-page":"9372","article-title":"The anti-allergic activity of Lactobacillus plantarum L67 and its application to yogurt","volume":"99","author":"Song, S.","unstructured":"Song, S., Lee, S.J., Park, D.J., Oh, S. and Lim, K.T., 2016. The anti-allergic activity of Lactobacillus plantarum L67 and its application to yogurt. Journal of Dairy Science 99: 9372-9382. https:\/\/doi.org\/10.3168\/jds.2016-11809"},{"key":"R000173","series-title":"American Journal of Gastroenterology","first-page":"441","article-title":"Fecal microbiota transfer in patients with chronic antibiotic-refractory pouchitis","volume":"111","author":"Stallmach, A.","unstructured":"Stallmach, A., Lange, K., Buening, J., Sina, C., Vital, M. and Pieper, D.H., 2016. Fecal microbiota transfer in patients with chronic antibiotic-refractory pouchitis. American Journal of Gastroenterology 111: 441-443. https:\/\/doi.org\/10.1038\/ajg.2015.436"},{"key":"R000174","series-title":"Annals of Gastroenterology","first-page":"45","article-title":"Gut microbiome, surgical complications and probiotics","volume":"30","author":"Stavrou, G.","unstructured":"Stavrou, G. and Kotzampassi, K., 2017. Gut microbiome, surgical complications and probiotics. Annals of Gastroenterology 30: 45-53. https:\/\/doi.org\/10.20524\/aog.2016.0086"},{"key":"R000175","series-title":"Nutrients","article-title":"The intestinal fate of citrus flavanones and their effects on gastrointestinal health","volume":"11","author":"Stevens, Y.","unstructured":"Stevens, Y., Rymenant, E.V., Grootaert, C., Camp, J.V., Possemiers, S., Masclee, A. and Jonkers, D., 2019. The intestinal fate of citrus flavanones and their effects on gastrointestinal health. Nutrients 11: 1464. https:\/\/doi.org\/10.3390\/nu11071464"},{"key":"R000176","series-title":"Beneficial Microbes","first-page":"463","article-title":"Differences between live and heat-killed bifidobacteria in the regulation of immune function and the intestinal environment","volume":"8","author":"Sugahara, H.","unstructured":"Sugahara, H., Yao, R., Odamaki, T. and Xiao, J.Z., 2017. Differences between live and heat-killed bifidobacteria in the regulation of immune function and the intestinal environment. Beneficial Microbes 8: 463-472. https:\/\/doi.org\/10.3920\/bm2016.0158"},{"key":"R000177","series-title":"Advances in Applied Microbiology","first-page":"1","article-title":"Antivirulence properties of probiotics in combating microbial pathogenesis","volume":"98","author":"Surendran Nair, M.","unstructured":"Surendran Nair, M., Amalaradjou, M.A. and Venkitanarayanan, K., 2017. Antivirulence properties of probiotics in combating microbial pathogenesis. Advances in Applied Microbiology 98: 1-29. https:\/\/doi.org\/10.1016\/bs.aambs.2016.12.001"},{"key":"R000178","series-title":"Nature Reviews Gastroenterology and Hepatology","first-page":"687","article-title":"The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics","volume":"17","author":"Swanson, K.S.","unstructured":"Swanson, K.S., Gibson, G.R., Hutkins, R., Reimer, R.A., Reid, G., Verbeke, K., Scott, K.P., Holscher, H.D., Azad, M.B., Delzenne, N.M. and Sanders, M.E., 2020. The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics. Nature Reviews Gastroenterology and Hepatology 17: 687-701. https:\/\/doi.org\/10.1038\/s41575-020-0344-2"},{"key":"R000179","series-title":"Alimentary Pharmacology & Therapeutics","first-page":"1376","article-title":"Systematic review with meta-analysis: Lactobacillus rhamnosus GG for treating acute gastroenteritis in children \u2013 a 2019 update","volume":"49","author":"Szajewska, H.","unstructured":"Szajewska, H., Ko\u0142odziej, M., Gieruszczak-Bia\u0142ek, D., Sko\u0301rka, A., Ruszczyn\u0301ski, M. and Shamir, R., 2019. Systematic review with meta-analysis: Lactobacillus rhamnosus GG for treating acute gastroenteritis in children \u2013 a 2019 update. Alimentary Pharmacology & Therapeutics 49: 1376-1384. https:\/\/doi.org\/10.1111\/apt.15267"},{"key":"R000180","series-title":"Nutrition Food Science and Biotechnology","first-page":"234","article-title":"A preliminary study of the synbiotic effects of konjac glucomannan hydrolysates (GMH) and lactobacilli on the growth of the oral bacterium Streptococcus mutans","volume":"41","author":"Tester, R.F.","unstructured":"Tester, R.F. and Al-Ghazzewi, F.H., 2011. A preliminary study of the synbiotic effects of konjac glucomannan hydrolysates (GMH) and lactobacilli on the growth of the oral bacterium Streptococcus mutans. Nutrition Food Science and Biotechnology 41: 234-237."},{"key":"R000181","series-title":"Beneficial Microbes","first-page":"101","article-title":"Postbiotics: what else?","volume":"4","author":"Tsilingiri, K.","unstructured":"Tsilingiri, K. and Rescigno, M., 2013. Postbiotics: what else? Beneficial Microbes 4: 101-107. https:\/\/doi.org\/10.3920\/BM2012.0046"},{"key":"R000182","series-title":"Journal of Dairy Science","first-page":"4822","article-title":"Screening probiotics from Lactobacillus strains according to their abilities to inhibit pathogen adhesion and induction of pro-inflammatory cytokine IL-8","volume":"101","author":"Tuo, Y.","unstructured":"Tuo, Y., Song, X., Song, Y., Liu, W., Tang, Y., Gao, Y., Jiang, S., Qian, F. and Mu, G., 2018. Screening probiotics from Lactobacillus strains according to their abilities to inhibit pathogen adhesion and induction of pro-inflammatory cytokine IL-8. Journal of Dairy Science 101: 4822-4829. https:\/\/doi.org\/10.3168\/jds.2017-13654"},{"key":"R000183","series-title":"Nature","first-page":"1027","article-title":"An obesity-associated gut microbiome with increased capacity for energy harvest","volume":"444","author":"Turnbaugh, P.J.","unstructured":"Turnbaugh, P.J., Ley, R.E., Mahowald, M.A., Magrini, V., Mardis, E.R. and Gordon, J.I., 2006. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031. https:\/\/doi.org\/10.1038\/nature05414"},{"key":"R000184","unstructured":"United Nations (UN), 2019. No time to wait: securing the future from drug-resistant infections. United Nations. Available at: https:\/\/www.who.int\/publications\/i\/item\/no-time-to-wait-securing-the-future-from-drug-resistant-infections"},{"key":"R000185","series-title":"Journal of Nutrition","first-page":"2060","article-title":"Soluble dextrin fibers alter the intestinal microbiota and reduce proinflammatory cytokine secretion in male IL-10-deficient mice","volume":"145","author":"Valcheva, R.","unstructured":"Valcheva, R., Hotte, N., Gillevet, P., Sikaroodi, M., Thiessen, A. and Madsen, K.L., 2015. Soluble dextrin fibers alter the intestinal microbiota and reduce proinflammatory cytokine secretion in male IL-10-deficient mice. Journal of Nutrition 145: 2060-2066. https:\/\/doi.org\/10.3945\/jn.114.207738"},{"key":"R000186","series-title":"Gastroenterology","article-title":"Beta-fructans reduce inflammation in mild to moderate ulcerative colitis through specific microbiota changes associated with improved butyrate formation and MUC2 expression","volume":"142","author":"Valcheva, R.","unstructured":"Valcheva, R., Koleva, P., Meijer, B.J., Walter, J., G\u00e4nzle, M. and Dieleman, L.A., 2012. Beta-fructans reduce inflammation in mild to moderate ulcerative colitis through specific microbiota changes associated with improved butyrate formation and MUC2 expression. Gastroenterology 142: S196."},{"key":"R000187","series-title":"Journal of Agricultural and Food Chemistry","first-page":"12815","article-title":"Six-week consumption of a wild blueberry powder drink increases bifidobacteria in the human gut","volume":"59","author":"Vendrame, S.","unstructured":"Vendrame, S., Guglielmetti, S., Riso, P., Arioli, S., Klimis-Zacas, D. and Porrini, M., 2011. Six-week consumption of a wild blueberry powder drink increases bifidobacteria in the human gut. 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Diseases of the Colon & Rectum 45."},{"key":"R000196","series-title":"Nature Medicine","first-page":"679","article-title":"Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer","volume":"25","author":"Wirbel, J.","unstructured":"Wirbel, J., Pyl, P.T., Kartal, E., Zych, K., Kashani, A., Milanese, A., Fleck, J.S., Voigt, A.Y., Palleja, A., Ponnudurai, R., Sunagawa, S., Coelho, L.P., Schrotz-King, P., Vogtmann, E., Habermann, N., Nime\u0301us, E., Thomas, A.M., Manghi, P., Gandini, S., Serrano, D., Mizutani, S., Shiroma, H., Shiba, S., Shibata, T., Yachida, S., Yamada, T., Waldron, L., Naccarati, A., Segata, N., Sinha, R., Ulrich, C.M., Brenner, H., Arumugam, M., Bork, P. and Zeller, G., 2019. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer. 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Galactooligosaccharides and Limosilactobacillus reuteri synergistically alleviate gut inflammation and barrier dysfunction by enriching Bacteroides acidifaciens for pentadecanoic acid biosynthesis. Nature Communications 15: 9291. https:\/\/doi.org\/10.1038\/s41467-024-53144-1"},{"key":"R000199","series-title":"Journal of Clinical Investigation","first-page":"2242","article-title":"Colon-specific delivery of a probiotic-derived soluble protein ameliorates intestinal inflammation in mice through an EGFR-dependent mechanism","volume":"121","author":"Yan, F.","unstructured":"Yan, F., Cao, H., Cover, T.L., Washington, M.K., Shi, Y., Liu, L., Chaturvedi, R., Peek, R.M., Jr., Wilson, K.T. and Polk, D.B., 2011. Colon-specific delivery of a probiotic-derived soluble protein ameliorates intestinal inflammation in mice through an EGFR-dependent mechanism. Journal of Clinical Investigation 121: 2242-2253. https:\/\/doi.org\/10.1172\/jci44031"},{"key":"R000200","series-title":"Biomedicine and Pharmacotherapy","article-title":"Traditional Chinese medicine against COVID-19: Role of the gut microbiota","volume":"149","author":"Yang, Z.","unstructured":"Yang, Z., Liu, Y., Wang, L., Lin, S., Dai, X., Yan, H., Ge, Z., Ren, Q., Wang, H., Zhu, F. and Wang, S., 2022. Traditional Chinese medicine against COVID-19: Role of the gut microbiota. Biomedicine and Pharmacotherapy 149: 112787. https:\/\/doi.org\/10.1016\/j.biopha.2022.112787"},{"key":"R000201","series-title":"Advanced Science","article-title":"Postbiotics from Lactobacillus johnsonii activates gut innate immunity to mitigate alcohol-associated liver disease","volume":"12","author":"Yin, R.","unstructured":"Yin, R., Wang, T., Sun, J., Dai, H., Zhang, Y., Liu, N. and Liu, H., 2025. Postbiotics from Lactobacillus johnsonii activates gut innate immunity to mitigate alcohol-associated liver disease. Advanced Science 12: e2405781. https:\/\/doi.org\/10.1002\/advs.202405781"},{"key":"R000202","series-title":"Scientific Reports","article-title":"Hypoglycemic and hypolipidemic effect of S-allyl-cysteine sulfoxide (alliin) in DIO mice","volume":"8","author":"Zhai, B.","unstructured":"Zhai, B., Zhang, C., Sheng, Y., Zhao, C., He, X., Xu, W., Huang, K. and Luo, Y., 2018. Hypoglycemic and hypolipidemic effect of S-allyl-cysteine sulfoxide (alliin) in DIO mice. Scientific Reports 8: 3527. https:\/\/doi.org\/10.1038\/s41598-018-21421-x"},{"key":"R000203","series-title":"Microbiota Medicine Research","first-page":"3","article-title":"Principles and practice guidelines of microbiota medicine: statements from the CHINAGUT conference","volume":"1","author":"Zhang, F.","unstructured":"Zhang, F., Pi, Z., Wong, S.H., Ahuja, V., Porcari, S., Ishikawa, D., Cao, H., Chen, L., Chen, N., Chen, X., Cui, B., Ding, X., He, X., Hu, J., Jin, J., Li, J., Liao, W., Liu, J., Liu, L., Liu, Y., Liu, Y., Liu, Y., Lu, C., Lu, G., Lv, M., Meng, X., Nie, Y., Ren, Q., Sang, L., Sun, X., Sun, Y., Tian, H., Wang, B., Wang, H., Wang, L., Wang, X., Wang, W., Wang, Z., Wei, Y., Wen, Q., Wu, L., Wu, X., Xiong, L., Ye, G., Yi, B., Yu, Y., Zeng, Y., Zhai, H., Zhang, T., Zhang, Z., Zhou, L., Zhu, L. and Wu, K., 2026. Principles and practice guidelines of microbiota medicine: statements from the CHINAGUT conference. Microbiota Medicine Research 1: 3-11. https:\/\/doi.org\/10.1002\/mmr3.70001"},{"key":"R000204","series-title":"Frontiers in Physiology","article-title":"Commensal homeostasis of gut microbiota-host for the impact of obesity","volume":"8","author":"Zhang, P.","unstructured":"Zhang, P., Meng, X., Li, D., Calderone, R., Mao, D. and Sui, B., 2017. Commensal homeostasis of gut microbiota-host for the impact of obesity. Frontiers in Physiology 8: 1122. https:\/\/doi.org\/10.3389\/fphys.2017.01122"},{"key":"R000205","series-title":"Biomedicine and Pharmacotherapy","article-title":"Effects of berberine and metformin on intestinal inflammation and gut microbiome composition in db\/db mice","volume":"118","author":"Zhang, W.","unstructured":"Zhang, W., Xu, J.H., Yu, T. and Chen, Q.K., 2019. Effects of berberine and metformin on intestinal inflammation and gut microbiome composition in db\/db mice. 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Oncotarget 7: 31790-31799. https:\/\/doi.org\/10.18632\/oncotarget.9306"},{"key":"R000207","series-title":"BioMed Research International","article-title":"are there potential applications of fecal microbiota transplantation beyond intestinal disorders?","volume":"2019","author":"Zhou, Y.","unstructured":"Zhou, Y., Xu, H., Huang, H., Li, Y., Chen, H., He, J., Du, Y., Chen, Y., Zhou, Y. and Nie, Y., 2019. are there potential applications of fecal microbiota transplantation beyond intestinal disorders? BioMed Research International 2019: 3469754. https:\/\/doi.org\/10.1155\/2019\/3469754"},{"key":"R000208","series-title":"Journal of Infection","first-page":"471","article-title":"The effect of antibiotics on the composition of the intestinal microbiota \u2013 a systematic review","volume":"79","author":"Zimmermann, P.","unstructured":"Zimmermann, P. and Curtis, N., 2019. The effect of antibiotics on the composition of the intestinal microbiota \u2013 a systematic review. 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