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Transport equation and regulator equation are introduced first to deal with the anti-damping on boundary and the distributed disturbance of the original system. Then, the tracking error and its derivative are measured to design an observer for both exosystem and auxiliary partial differential equation (PDE) system to recover the state. After proving the well-posedness of the regulator equations, we propose an observer-based controller to regulate the tracking error to zero exponentially and keep the states of all the internal loop uniformly bounded. 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