{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,10,9]],"date-time":"2023-10-09T22:35:25Z","timestamp":1696890925494},"reference-count":55,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2009,6,29]],"date-time":"2009-06-29T00:00:00Z","timestamp":1246233600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2009,12]]},"DOI":"10.1186\/1471-2105-10-200","type":"journal-article","created":{"date-parts":[[2009,6,30]],"date-time":"2009-06-30T06:14:20Z","timestamp":1246342460000},"source":"Crossref","is-referenced-by-count":14,"title":["Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis"],"prefix":"10.1186","volume":"10","author":[{"given":"Ming","family":"Yi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Uma","family":"Mudunuri","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anney","family":"Che","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert M","family":"Stephens","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,6,29]]},"reference":[{"key":"2930_CR1","doi-asserted-by":"publisher","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","volume":"95","author":"MB Eisen","year":"1998","unstructured":"Eisen MB, Spellman PT, Brown PO, Botstein D: Clustering analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95: 14863\u201314868. 10.1073\/pnas.95.25.14863","journal-title":"Proc Natl Acad Sci USA"},{"key":"2930_CR2","doi-asserted-by":"publisher","first-page":"100","DOI":"10.2307\/2346830","volume":"28","author":"JA Hartigan","year":"1979","unstructured":"Hartigan JA, Wong MA: A k-means clustering algorithm. Applied Statistics 1979, 28: 100\u2013108. 10.2307\/2346830","journal-title":"Applied Statistics"},{"key":"2930_CR3","doi-asserted-by":"publisher","first-page":"2907","DOI":"10.1073\/pnas.96.6.2907","volume":"96","author":"P Tamayo","year":"1999","unstructured":"Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR: Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA 1999, 96: 2907\u20132912. 10.1073\/pnas.96.6.2907","journal-title":"Proc Natl Acad Sci USA"},{"key":"2930_CR4","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1186\/1471-2105-7-30","volume":"7","author":"M Yi","year":"2006","unstructured":"Yi M, Horton J, Cohen JC, Hobbs HH, Robert M, Stephens RM: WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. BMC Bioinformatics 2006, 7: 30. 10.1186\/1471-2105-7-30","journal-title":"BMC Bioinformatics"},{"key":"2930_CR5","doi-asserted-by":"publisher","first-page":"5116","DOI":"10.1073\/pnas.091062498","volume":"98","author":"VG Tusher","year":"2001","unstructured":"Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to ionizing radiation response. Proc Natl Acad Sci USA 2001, 98: 5116\u20135121. 10.1073\/pnas.091062498","journal-title":"Proc Natl Acad Sci USA"},{"issue":"15","key":"2930_CR6","doi-asserted-by":"publisher","first-page":"1945","DOI":"10.1093\/bioinformatics\/btg264","volume":"19","author":"N Jain","year":"2003","unstructured":"Jain N, Ley K, Thatte J, O'Connell M, Lee JK: Local pooled error test for identifying differentially expressed genes with a small number of replicated microarrays. Bioinformatics 2003, 19(15):1945\u201351. 10.1093\/bioinformatics\/btg264","journal-title":"Bioinformatics"},{"key":"2930_CR7","doi-asserted-by":"publisher","first-page":"1348","DOI":"10.1093\/bioinformatics\/btg165","volume":"19","author":"S Draghici","year":"2003","unstructured":"Draghici S, Kulaeva O, Hoff B, Petrov A, Shams S, Tainsky MA: Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays. Bioinformatics 2003, 19: 1348\u201359. 10.1093\/bioinformatics\/btg165","journal-title":"Bioinformatics"},{"key":"2930_CR8","doi-asserted-by":"publisher","first-page":"282","DOI":"10.1016\/S1046-2023(03)00157-9","volume":"31","author":"P Pavlidis","year":"2003","unstructured":"Pavlidis P: Using ANOVA for gene selection from microarray studies of nervous system. Methods 2003, 31: 282\u201389. 10.1016\/S1046-2023(03)00157-9","journal-title":"Methods"},{"key":"2930_CR9","unstructured":"Ingenuity Pathways Analysis tool, a product of Ingenuity Systems Inc[ http:\/\/www.ingenuity.com ]"},{"key":"2930_CR10","unstructured":"MetaCore, a product of GeneGO Inc[ http:\/\/www.genego.com ]"},{"key":"2930_CR11","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T: Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13: 2498\u20132504. 10.1101\/gr.1239303","journal-title":"Genome Res"},{"key":"2930_CR12","doi-asserted-by":"publisher","first-page":"P3","DOI":"10.1186\/gb-2003-4-5-p3","volume":"4","author":"G Dennis Jr","year":"2003","unstructured":"Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003, 4: P3. 10.1186\/gb-2003-4-5-p3","journal-title":"Genome Biol"},{"key":"2930_CR13","volume-title":"Nucleic Acids Research","author":"F Al-Shahrour","year":"2005","unstructured":"Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J: Babelomics: a suite of web-tools for functional annotation and analysis of group of genes in high-throughput experiments. Nucleic Acids Research 2005, (33 Web Server):W460-W464. 10.1093\/nar\/gki456"},{"key":"2930_CR14","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1186\/1471-2105-6-168","volume":"6","author":"BR Zeeberg","year":"2005","unstructured":"Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN: High-throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of common variable immune deficiency (CVID). BMC Bioinformatics 2005, 6: 168. 10.1186\/1471-2105-6-168","journal-title":"BMC Bioinformatics"},{"key":"2930_CR15","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1038\/ng1180","volume":"34","author":"VK Mootha","year":"2003","unstructured":"Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, et al.: PGC-1-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet 2003, 34: 267\u2013273. 10.1038\/ng1180","journal-title":"Nat Genet"},{"key":"2930_CR16","doi-asserted-by":"publisher","first-page":"15545","DOI":"10.1073\/pnas.0506580102","volume":"102","author":"A Subramanian","year":"2005","unstructured":"Subramanian A, Tamayo P, Mootha V, Mukherjee S, Ebert BL, et al.: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005, 102: 15545\u201315550. 10.1073\/pnas.0506580102","journal-title":"Proc Natl Acad Sci USA"},{"key":"2930_CR17","doi-asserted-by":"publisher","first-page":"1224","DOI":"10.1126\/science.291.5507.1224","volume":"291","author":"L Peltonen","year":"2001","unstructured":"Peltonen L, McKusick VA: Genomics and medicine: dissecting human disease in postgenomic era. Science 2001, 291: 1224\u20131229. 10.1126\/science.291.5507.1224","journal-title":"Science"},{"issue":"18","key":"2930_CR18","doi-asserted-by":"publisher","first-page":"2239","DOI":"10.1001\/jama.286.18.2239","volume":"286","author":"WK Scott","year":"2001","unstructured":"Scott WK, Nance MA, Watts RL, Hubble JP, Koller WC, Lyons K, Pahwa R, Stern M, Colcher A, Hiner BC, et al.: Complete genomic screen in Parkinson's disease: evidence for multiple genes. JAMA 2001, 286(18):2239\u20132244. 10.1001\/jama.286.18.2239","journal-title":"JAMA"},{"key":"2930_CR19","doi-asserted-by":"publisher","first-page":"1114","DOI":"10.1101\/gr.169101","volume":"11","author":"LT Reiter","year":"2001","unstructured":"Reiter LT, Potocki L, Chien S, Gribskov M, Bier E: A systematic analysis of human disease-associated genes sequences in Drosophila melanogaster. Genome Res 2001, 11: 1114\u20131125. 10.1101\/gr.169101","journal-title":"Genome Res"},{"key":"2930_CR20","doi-asserted-by":"publisher","first-page":"864","DOI":"10.1093\/nar\/gki230","volume":"33","author":"S Dohr","year":"2005","unstructured":"Dohr S, Klingenhoff A, Maier H, Hrab\u00e9 de Angelis M, Werner T, Schneider R: Linking disease-associated genes to regulatory networks via promoter organization. Nucleic Acids Res 2005, 33: 864\u2013872. 10.1093\/nar\/gki230","journal-title":"Nucleic Acids Res"},{"key":"2930_CR21","doi-asserted-by":"publisher","first-page":"2500","DOI":"10.1093\/bioinformatics\/btl424","volume":"22","author":"T Manoli","year":"2006","unstructured":"Manoli T, Gretz N, Grone H-J, Kenzelmann M, Elis R, Brors B: Group testing for pathway analysis improves comparability of different microarray datasets. Bioinformatics 2006, 22: 2500\u20132506. 10.1093\/bioinformatics\/btl424","journal-title":"Bioinformatics"},{"issue":"9","key":"2930_CR22","doi-asserted-by":"publisher","first-page":"e3288","DOI":"10.1371\/journal.pone.0003288","volume":"3","author":"M Yi","year":"2008","unstructured":"Yi M, Stephens RM: SLEPR: A sample-level enrichment-based pathway ranking method seeking for biological themes through pathway-level consistency within multiple high-throughput datasets. PLoS ONE 2008, 3(9):e3288. 10.1371\/journal.pone.0003288","journal-title":"PLoS ONE"},{"key":"2930_CR23","unstructured":"The Institute for Genomic Research (TIGR) software TM4 download page[ http:\/\/www.tigr.org\/software\/tm4\/ ]"},{"key":"2930_CR24","unstructured":"Partek Genomic Suite, a product of Partek Inc[ http:\/\/www.partek.com ]"},{"key":"2930_CR25","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1186\/1471-2105-8-74","volume":"8","author":"JJ Chen","year":"2007","unstructured":"Chen JJ, Tsai C-A, Tzeng SL, Chen C-H: Gene selection with multiple ordering criteria. BMC Bioinformatics 2007, 8: 74. 10.1186\/1471-2105-8-74","journal-title":"BMC Bioinformatics"},{"key":"2930_CR26","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S1476-5586(04)80047-2","volume":"6","author":"DR Rhodes","year":"2004","unstructured":"Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM: ONCOMINE: A Cancer Microarray Database and Data-Mining Platform. Neoplasia 2004, 6: 1\u20136.","journal-title":"Neoplasia"},{"key":"2930_CR27","doi-asserted-by":"publisher","first-page":"822","DOI":"10.1038\/35090585","volume":"412","author":"SM Dhanasekaran","year":"2001","unstructured":"Dhanasekaran SM, Barrette TR, Ghosh D, Shah R, Varambally S, Kurachi K, Pienta KJ, Rubin MA, Chinnaiyan AM: Delineation of prognostic biomarkers in prostate cancer. Nature 2001, 412: 822\u20136. 10.1038\/35090585","journal-title":"Nature"},{"issue":"2","key":"2930_CR28","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1096\/fj.04-2415fje","volume":"19","author":"SM Dhanasekaran","year":"2005","unstructured":"Dhanasekaran SM, Dash A, Yu J, Maine IP, Laxman B, Tomlins SA, Creighton CJ, Menon A, Rubin MA, Chinnaiyan AM: Molecular profiling of human prostate tissues: insights into gene expression patterns of prostate development during puberty. FASEB J 2005, 19(2):243\u20135.","journal-title":"FASEB J"},{"issue":"3","key":"2930_CR29","doi-asserted-by":"publisher","first-page":"811","DOI":"10.1073\/pnas.0304146101","volume":"101","author":"J Lapointe","year":"2004","unstructured":"Lapointe J, Li C, Higgins JP, Rijn M, Bair E, Montgomery K, Ferrari M, Egevad L, Rayford W, Bergerheim U, Ekman P, DeMarzo AM, Tibshirani R, Botstein D, Brown PO, Brooks JD, Pollack JR: Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci USA 2004, 101(3):811\u20136. 10.1073\/pnas.0304146101","journal-title":"Proc Natl Acad Sci USA"},{"issue":"1","key":"2930_CR30","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1038\/ng1935","volume":"39","author":"SA Tomlins","year":"2007","unstructured":"Tomlins SA, Mehra R, Rhodes DR, Cao X, Wang L, Dhanasekaran SM, Kalyana-Sundaram S, Wei JT, Rubin MA, Pienta KJ, Shah RB, Chinnaiyan AM: Integrative molecular concept modeling of prostate cancer progression. Nat Genet 2007, 39(1):41\u201351. 10.1038\/ng1935","journal-title":"Nat Genet"},{"issue":"16","key":"2930_CR31","first-page":"5974","volume":"61","author":"JB Welsh","year":"2001","unstructured":"Welsh JB, Sapinoso LM, Su AI, Kern SG, Wang-Rodriguez J, Moskaluk CA, Frierson HF, Hampton GM: Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer. Cancer Res 2001, 61(16):5974\u20138.","journal-title":"Cancer Res"},{"issue":"14","key":"2930_CR32","doi-asserted-by":"publisher","first-page":"2790","DOI":"10.1200\/JCO.2004.05.158","volume":"22","author":"YP Yu","year":"2004","unstructured":"Yu YP, Landsittel D, Jing L, Nelson J, Ren B, Liu L, McDonald C, Thomas R, Dhir R, Finkelstein S, Michalopoulos G, Becich M, Luo JH: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy. J Clin Oncol 2004, 22(14):2790\u20139. 10.1200\/JCO.2004.05.158","journal-title":"J Clin Oncol"},{"issue":"10","key":"2930_CR33","doi-asserted-by":"publisher","first-page":"2061","DOI":"10.1002\/ijc.22648","volume":"120","author":"JM Pellikainen","year":"2007","unstructured":"Pellikainen JM, Kosma VM: Activator protein-2 in carcinogenesis with a special reference to breast cancer-A mini review. Int J Cancer 2007, 120(10):2061\u20137. 10.1002\/ijc.22648","journal-title":"Int J Cancer"},{"issue":"7","key":"2930_CR34","doi-asserted-by":"publisher","first-page":"709","DOI":"10.4161\/cc.5.7.2628","volume":"5","author":"S St Clair","year":"2006","unstructured":"St Clair S, Manfredi JJ: The dual specificity phosphatase Cdc25C is a direct target for transcriptional repression by the tumor suppressor p53. Cell Cycle 2006, 5(7):709\u201313.","journal-title":"Cell Cycle"},{"issue":"2","key":"2930_CR35","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1016\/j.clon.2006.11.013","volume":"19","author":"RO Esc\u00e1rcega","year":"2007","unstructured":"Esc\u00e1rcega RO, Fuentes-Alexandro S, Garc\u00eda-Carrasco M, Gatica A, Zamora A: The transcription factor nuclear factor-kappa B and cancer. Clin Oncol (R Coll Radiol) 2007, 19(2):154\u201361.","journal-title":"Clin Oncol (R Coll Radiol)"},{"issue":"2","key":"2930_CR36","doi-asserted-by":"publisher","first-page":"205","DOI":"10.5507\/bp.2006.029","volume":"150","author":"B Kusenda","year":"2006","unstructured":"Kusenda B, Mraz M, Mayer J, Pospisilova S: MicroRNA biogenesis, functionality, and cancer relevance. Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub 2006, 150(2):205\u201315.","journal-title":"Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub"},{"issue":"6","key":"2930_CR37","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1111\/j.1365-2141.2007.06611.x","volume":"137","author":"CH Lawrie","year":"2007","unstructured":"Lawrie CH: MicroRNAs and haematology: small molecules, big function. Br J Haematol 2007, 137(6):503\u201312. 10.1111\/j.1365-2141.2007.06611.x","journal-title":"Br J Haematol"},{"issue":"10","key":"2930_CR38","doi-asserted-by":"publisher","first-page":"1529","DOI":"10.1016\/j.ejca.2007.04.002","volume":"43","author":"EA Wiemer","year":"2007","unstructured":"Wiemer EA: The role of microRNAs in cancer: No small matter. Eur J Cancer 2007, 43(10):1529\u20131544. 10.1016\/j.ejca.2007.04.002","journal-title":"Eur J Cancer"},{"issue":"1","key":"2930_CR39","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/j.canlet.2005.12.004","volume":"242","author":"N Cordes","year":"2006","unstructured":"Cordes N: Integrin-mediated cell-matrix interactions for prosurvival and antiapoptotic signaling after genotoxic injury. Cancer Lett 2006, 242(1):11\u20139. 10.1016\/j.canlet.2005.12.004","journal-title":"Cancer Lett"},{"issue":"22","key":"2930_CR40","doi-asserted-by":"publisher","first-page":"3291","DOI":"10.1038\/sj.onc.1210422","volume":"26","author":"PJ Roberts","year":"2007","unstructured":"Roberts PJ, Der CJ: Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer. Oncogene 2007, 26(22):3291\u2013310. 10.1038\/sj.onc.1210422","journal-title":"Oncogene"},{"issue":"6","key":"2930_CR41","doi-asserted-by":"publisher","first-page":"743","DOI":"10.2217\/14796694.2.6.743","volume":"2","author":"AJ Galliher","year":"2006","unstructured":"Galliher AJ, Neil JR, Schiemann WP: Role of transforming growth factor-beta in cancer progression. Future Oncol 2006, 2(6):743\u201363. 10.2217\/14796694.2.6.743","journal-title":"Future Oncol"},{"issue":"5","key":"2930_CR42","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1159\/000098207","volume":"73","author":"G Turashvili","year":"2006","unstructured":"Turashvili G, Bouchal J, Burkadze G, Kolar Z: Wnt signaling pathway in mammary gland development and carcinogenesis. Pathobiology 2006, 73(5):213\u201323. 10.1159\/000098207","journal-title":"Pathobiology"},{"key":"2930_CR43","doi-asserted-by":"publisher","first-page":"6062","DOI":"10.1073\/pnas.0400782101","volume":"101","author":"AI Su","year":"2004","unstructured":"Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB: A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 2004, 101: 6062\u20136067. 10.1073\/pnas.0400782101","journal-title":"Proc Natl Acad Sci USA"},{"key":"2930_CR44","first-page":"4427","volume":"62","author":"DR Rhodes","year":"2002","unstructured":"Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM: Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Res 2002, 62: 4427\u20134433.","journal-title":"Cancer Res"},{"issue":"Suppl","key":"2930_CR45","doi-asserted-by":"publisher","first-page":"S31","DOI":"10.1038\/ng1570","volume":"37","author":"DR Rhodes","year":"2005","unstructured":"Rhodes DR, Chinnaiyan AM: Integrative analysis of the cancer transcriptome. Nat Genet 2005, 37(Suppl):S31\u20137. 10.1038\/ng1570","journal-title":"Nat Genet"},{"key":"2930_CR46","doi-asserted-by":"crossref","first-page":"R70.1","DOI":"10.1186\/gb-2003-4-10-r70","volume":"4","author":"DA Hosack","year":"2003","unstructured":"Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA: Identifying biological themes within lists of genes with EASE. Genome Biology 2003, 4: R70.1-R70.8.","journal-title":"Genome Biology"},{"key":"2930_CR47","first-page":"474","volume-title":"Pac Symp Biocomput","author":"P Pavlidis","year":"2002","unstructured":"Pavlidis P, Lewis DP, Noble WS: Exploring gene expression data with class scores. Pac Symp Biocomput 2002, 474\u2013485."},{"issue":"6","key":"2930_CR48","doi-asserted-by":"publisher","first-page":"1324","DOI":"10.1002\/ijc.23237","volume":"122","author":"BJ Boersma","year":"2008","unstructured":"Boersma BJ, Reimers M, Yi M, Ludwig JA, Luke B, Stephens RM, Yfantis HG, Lee DH, Weinstein JN, Ambs S: A stromal gene signature associated with inflammatory breast cancer. Int J Cancer 2008, 122(6):1324\u201332. 10.1002\/ijc.23237","journal-title":"Int J Cancer"},{"issue":"11","key":"2930_CR49","doi-asserted-by":"publisher","first-page":"1152","DOI":"10.1002\/pros.20786","volume":"68","author":"RL Prueitt","year":"2008","unstructured":"Prueitt RL, Yi M, Hudson RS, Wallace TA, Howe TM, Yfantis HG, Lee DH, Stephens RM, Liu CG, Calin GA, Croce CM, Ambs S: Expression of microRNAs and protein-coding genes associated with perineural invasion in prostate cancer. Prostate 2008, 68(11):1152\u201364. 10.1002\/pros.20786","journal-title":"Prostate"},{"issue":"3","key":"2930_CR50","doi-asserted-by":"publisher","first-page":"927","DOI":"10.1158\/0008-5472.CAN-07-2608","volume":"68","author":"TA Wallace","year":"2008","unstructured":"Wallace TA, Prueitt RL, Yi M, Howe TW, Goedert JJ, Gillespie JW, Yfantis HG, Stephens RM, Caporaso N, Loffredo CA, Ambs S: Tumor immunobiological differences in prostate cancer between African-Amerian and European-Amerian Men. Cancer Res 2008, 68(3):927\u201336. 10.1158\/0008-5472.CAN-07-2608","journal-title":"Cancer Res"},{"issue":"1","key":"2930_CR51","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1534\/genetics.107.082602","volume":"178","author":"MN Katherine","year":"2008","unstructured":"Katherine MN, Checkley MA, Yi M, Stephens RM, Garfinkel DJ: Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis. Genetics 2008, 178(1):197\u2013214. 10.1534\/genetics.107.082602","journal-title":"Genetics"},{"issue":"6","key":"2930_CR52","doi-asserted-by":"publisher","first-page":"e2484","DOI":"10.1371\/journal.pone.0002484","volume":"3","author":"H Jiang","year":"2008","unstructured":"Jiang H, Patel JJ, Yi M, Mu J, Ding J, Stephens R, Cooper RA, Ferdig MT, Su XZ: Genome-wide compensatory changes accompany drug-selected mutations in the Plasmodium falciparum crt gene. PLoS ONE 2008, 3(6):e2484. 10.1371\/journal.pone.0002484","journal-title":"PLoS ONE"},{"issue":"11","key":"2930_CR53","doi-asserted-by":"publisher","first-page":"3051","DOI":"10.1158\/1055-9965.EPI-08-0261","volume":"17","author":"N Fatima","year":"2008","unstructured":"Fatima N, Yi M, Ajaz S, Stephens RM, Stauffer S, Greenwald P, Munroe DJ, Ali IU: Altered Gene Expression Profiles Define Pathways in Colorectal Cancer Cell Lines Affected by Celecoxib. Cancer Epidemiol Biomarkers Prev 2008, 17(11):3051\u201361. 10.1158\/1055-9965.EPI-08-0261","journal-title":"Cancer Epidemiol Biomarkers Prev"},{"key":"2930_CR54","volume-title":"Brain","author":"F Simunovic","year":"2008","unstructured":"Simunovic F, Yi M, Wang Y, Macey L, Brown LT, Krichevsky AM, Andersen SL, Stephens RM, Benes FM, Sonntag KC: Gene Expression Profiling of Substantia Nigra Dopamine Neurons: Further Insights into Parkinson Disease Pathology. Brain 2008. DOI 10.1093\/brain\/awn323 DOI 10.1093\/brain\/awn323"},{"key":"2930_CR55","unstructured":"Download website for WholePathwayScope (WPS)[ http:\/\/www.abcc.ncifcrf.gov\/wps\/wps_index.php ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-200.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-10-200\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-200.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,20]],"date-time":"2020-05-20T03:34:14Z","timestamp":1589945654000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-10-200"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,6,29]]},"references-count":55,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2009,12]]}},"alternative-id":["2930"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-10-200","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,6,29]]},"article-number":"200"}}