{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,9,10]],"date-time":"2023-09-10T14:31:25Z","timestamp":1694356285559},"reference-count":20,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2009,7,29]],"date-time":"2009-07-29T00:00:00Z","timestamp":1248825600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2009,12]]},"DOI":"10.1186\/1471-2105-10-235","type":"journal-article","created":{"date-parts":[[2009,7,29]],"date-time":"2009-07-29T14:15:34Z","timestamp":1248876934000},"source":"Crossref","is-referenced-by-count":5,"title":["TableButler \u2013 a Windows based tool for processing large data tables generated with high-throughput methods"],"prefix":"10.1186","volume":"10","author":[{"given":"Christian","family":"Schwager","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ute","family":"Wirkner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amir","family":"Abdollahi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter E","family":"Huber","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,7,29]]},"reference":[{"key":"2965_CR1","first-page":"3","volume":"9","author":"PT Spellman","year":"2002","unstructured":"Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A: Design and implementation of microarray gene expression markup language (MAGE-ML). Genome 2002., 3(9):","journal-title":"Genome"},{"key":"2965_CR2","unstructured":"Rosetta Resolver Rosetta Biosoftware, 401 Terry Avenue N, Seattle, WA 98109 USA;"},{"key":"2965_CR3","doi-asserted-by":"publisher","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","volume":"5","author":"RC Gentleman","year":"2004","unstructured":"Gentleman RC, Carey VJ, Bates DJ, Bolstad BM, Dettling M, et al.: Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 2004, 5: R80. 10.1186\/gb-2004-5-10-r80","journal-title":"Genome Biology"},{"key":"2965_CR4","unstructured":"The R Project for Statistical Computing[\n                    http:\/\/www.r-project.org\/\n                    \n                  ]"},{"issue":"1","key":"2965_CR5","doi-asserted-by":"publisher","first-page":"152","DOI":"10.1093\/nar\/29.1.152","volume":"29","author":"G Sherlock","year":"2001","unstructured":"Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman PT, Brown PO, Botstein D, Cherry JM: The Stanford Microarray Database. Nucleic Acids Res 2001, 29(1):152\u20135. 5. Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C: BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data; Genome Biol. 2002 Jul 15;3(8) 5. Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C: BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data; Genome Biol. 2002 Jul 15;3(8) 10.1093\/nar\/29.1.152","journal-title":"Nucleic Acids Res"},{"key":"2965_CR6","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1093\/bioinformatics\/17.4.369","volume":"17","author":"B Dysvik","year":"2001","unstructured":"Dysvik B, Jonassen I: J-Express: Exploring Gene Expression Data using Java. Bioinformatics 2001, 17: 369\u2013370. 10.1093\/bioinformatics\/17.4.369","journal-title":"Bioinformatics"},{"issue":"2","key":"2965_CR7","doi-asserted-by":"crossref","first-page":"374","DOI":"10.2144\/03342mt01","volume":"34","author":"AI Saeed","year":"2003","unstructured":"Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J: TM4: a free, open-source system for microarray data management and analysis. Biotechniques 2003, 34(2):374\u20138.","journal-title":"Biotechniques"},{"key":"2965_CR8","unstructured":"OpenOffice.org \u2013 The free and open productivity suite[\n                    http:\/\/www.openoffice.org\/index.html\n                    \n                  ]"},{"key":"2965_CR9","unstructured":"The Perl Directory \u2013 perl.org[\n                    http:\/\/www.perl.org\/\n                    \n                  ]"},{"key":"2965_CR10","unstructured":"GCC, the GNU Compiler Collection \u2013 GNU Project \u2013 Free Software Foundation(FSF)[\n                    http:\/\/gcc.gnu.org\/\n                    \n                  ]"},{"key":"2965_CR11","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1186\/1471-2164-7-278","volume":"7","author":"A Glas","year":"2006","unstructured":"Glas A, Floore A, Delahaye L, Witteveen A, Pover R, Bakx N, Lahti-Domenici J, Bruinsma T, Warmoes T, Bernards R, Wessels L, Van't Veer L: Converting a breast cancer microarray signature into a high-throughput diagnostic test. BMC Genomics 2006, 7: 278. 10.1186\/1471-2164-7-278","journal-title":"BMC Genomics"},{"key":"2965_CR12","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1016\/S1097-2765(04)00102-9","volume":"13","author":"A Abdollahi","year":"2004","unstructured":"Abdollahi A, Hahnfeldt P, Maercker C, Grone HJ, Debus J, Ansorge W, Folkman J, Hlatky L, Huber PE: Endostatin's antiangiogenic signaling network. Mol Cell 2004, 13: 649\u2013663. 10.1016\/S1097-2765(04)00102-9","journal-title":"Mol Cell"},{"issue":"11","key":"2965_CR13","doi-asserted-by":"publisher","first-page":"1402","DOI":"10.1016\/j.exphem.2005.07.003","volume":"33","author":"W Wagner","year":"2005","unstructured":"Wagner W, Wein F, Seckinger A, Frankhauser M, Wirkner U, Krause U, Blake J, Schwager C, Eckstein V, Ansorge W, Ho AD: Comparative characteristics of mesenchymal stem cells from human bone marrow, adipose tissue, and umbilical cord blood. Exp Hematol 2005, 33(11):1402\u201316. 10.1016\/j.exphem.2005.07.003","journal-title":"Exp Hematol"},{"issue":"8","key":"2965_CR14","doi-asserted-by":"publisher","first-page":"1050","DOI":"10.1634\/stemcells.2005-0006","volume":"23","author":"W Wagner","year":"2005","unstructured":"Wagner W, Laufs S, Blake J, Schwager C, Wu X, Zeller JW, Ho AD, Fruehauf S: Retroviral integration sites correlate with expressed genes in hematopoietic stem cells. Stem Cells 2005, 23(8):1050\u20138. 10.1634\/stemcells.2005-0006","journal-title":"Stem Cells"},{"issue":"8","key":"2965_CR15","doi-asserted-by":"publisher","first-page":"1180","DOI":"10.1634\/stemcells.2004-0361","volume":"23","author":"W Wagner","year":"2005","unstructured":"Wagner W, Saffrich R, Wirkner U, Eckstein V, Blake J, Ansorge A, Schwager C, Wein F, Miesala K, Ansorge W, Ho AD: Hematopoietic progenitor cells and cellular microenvironment: behavioral and molecular changes upon interaction. Stem Cells 2005, 23(8):1180\u201391. 10.1634\/stemcells.2004-0361","journal-title":"Stem Cells"},{"issue":"3","key":"2965_CR16","doi-asserted-by":"publisher","first-page":"675","DOI":"10.1182\/blood-2003-10-3423","volume":"104","author":"W Wagner","year":"2004","unstructured":"Wagner W, Ansorge A, Wirkner U, Eckstein V, Schwager C, Blake J, Miesala K, Selig J, Saffrich R, Ansorge W, Ho AD: Molecular evidence for stem cell function of the slow-dividing fraction among human hematopoietic progenitor cells by genome-wide analysis. Blood 2004, 104(3):675\u201386. 10.1182\/blood-2003-10-3423","journal-title":"Blood"},{"issue":"10","key":"2965_CR17","doi-asserted-by":"publisher","first-page":"1934","DOI":"10.1038\/sj.bjc.6602560","volume":"92","author":"K Almstrup","year":"2005","unstructured":"Almstrup K, Hoei-Hansen CE, Nielsen JE, Wirkner U, Ansorge W, Skakkebaek NE, Rajpert-De Meyts E, Leffers H: Genome-wide gene expression profiling of testicular carcinoma in situ progression into overt tumours. Br J Cancer 2005, 92(10):1934\u201341. 10.1038\/sj.bjc.6602560","journal-title":"Br J Cancer"},{"issue":"14","key":"2965_CR18","doi-asserted-by":"publisher","first-page":"4736","DOI":"10.1158\/0008-5472.CAN-04-0679","volume":"64","author":"K Almstrup","year":"2004","unstructured":"Almstrup K, Hoei-Hansen CE, Wirkner U, Blake J, Schwager C, Ansorge W, Nielsen JE, Skakkebaek NE, Rajpert-De Meyts E, Leffers H: Embryonic stem cell-like features of testicular carcinoma in situ revealed by genome-wide gene expression profiling. Cancer Res 2004, 64(14):4736\u201343. 10.1158\/0008-5472.CAN-04-0679","journal-title":"Cancer Res"},{"issue":"6","key":"2965_CR19","doi-asserted-by":"publisher","first-page":"1656","DOI":"10.1158\/1535-7163.MCT-08-0193","volume":"7","author":"S Domhan","year":"2008","unstructured":"Domhan S, Muschal S, Schwager C, Morath C, Wirkner U, Ansorge W, Maercker C, Zeier M, Huber PE, Abdollahi A: Molecular mechanisms of the antiangiogenic and antitumor effects of mycophenolic acid. Mol Cancer Ther 2008, 7(6):1656\u201368. 10.1158\/1535-7163.MCT-08-0193","journal-title":"Mol Cancer Ther"},{"issue":"31","key":"2965_CR20","doi-asserted-by":"publisher","first-page":"12890","DOI":"10.1073\/pnas.0705505104","volume":"104","author":"A Abdollahi","year":"2007","unstructured":"Abdollahi A, Schwager C, Kleeff J, Esposito I, Domhan S, Peschke P, Hauser K, Hahnfeldt P, Hlatky L, Debus J, Peters JM, Friess H, Folkman J, Huber PE: Transcriptional network governing the angiogenic switch in human pancreatic cancer. Proc Natl Acad Sci USA 2007, 104(31):12890\u20135. 10.1073\/pnas.0705505104","journal-title":"Proc Natl Acad Sci USA"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-235.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-10-235\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-235.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T01:29:03Z","timestamp":1548206943000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-10-235"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,7,29]]},"references-count":20,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2009,12]]}},"alternative-id":["2965"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-10-235","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,7,29]]},"article-number":"235"}}