{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,13]],"date-time":"2025-02-13T06:40:13Z","timestamp":1739428813082,"version":"3.37.0"},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2009,11,12]],"date-time":"2009-11-12T00:00:00Z","timestamp":1257984000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2009,12]]},"DOI":"10.1186\/1471-2105-10-374","type":"journal-article","created":{"date-parts":[[2009,11,12]],"date-time":"2009-11-12T19:41:49Z","timestamp":1258054909000},"source":"Crossref","is-referenced-by-count":13,"title":["Linguistic feature analysis for protein interaction extraction"],"prefix":"10.1186","volume":"10","author":[{"given":"Timur","family":"Fayruzov","sequence":"first","affiliation":[]},{"given":"Martine","family":"De Cock","sequence":"additional","affiliation":[]},{"given":"Chris","family":"Cornelis","sequence":"additional","affiliation":[]},{"given":"Veronique","family":"Hoste","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2009,11,12]]},"reference":[{"key":"3104_CR1","volume-title":"Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing","author":"A Airola","year":"2008","unstructured":"Airola A, Pyysalo S, Bj\u00f6rne J, Pahikkala T, Ginter F, Salakoski T: A Graph Kernel for Protein-Protein Interaction Extraction. In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing. ACL; 2008."},{"key":"3104_CR2","volume-title":"NIPS","author":"RC Bunescu","year":"2005","unstructured":"Bunescu RC, Mooney RJ: Subsequence Kernels for Relation Extraction. NIPS 2005. [ http:\/\/www.cs.utexas.edu\/users\/ml\/papers\/erk-nips-05.pdf ]"},{"issue":"3","key":"3104_CR3","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/bioinformatics\/btl616","volume":"23","author":"K Fundel","year":"2007","unstructured":"Fundel K, K\u00fcffner R, Zimmer R: RelEx - relation extraction using dependency parse trees. Bioinformatics 2007, 23(3):365\u2013371.","journal-title":"Bioinformatics"},{"key":"3104_CR4","volume-title":"11th Conference of the European Chapter of the Association for Computational Linguistics (EACL '06)","author":"C Giuliano","year":"2006","unstructured":"Giuliano C, Lavelli A, Romano L: Exploiting Shallow Linguistic Information for Relation Extraction from Biomedical Literature. In 11th Conference of the European Chapter of the Association for Computational Linguistics (EACL '06). Trento, Italy: ACL; 2006."},{"key":"3104_CR5","volume-title":"Proceedings of the Fifteenth Dutch-Belgian Conference on Machine Learning","author":"S Katrenko","year":"2006","unstructured":"Katrenko S, Adriaans P: Learning Relations from Biomedical Corpora Using Dependency Tree Levels. Proceedings of the Fifteenth Dutch-Belgian Conference on Machine Learning 2006."},{"key":"3104_CR6","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1093\/bioinformatics\/btm544","volume":"24","author":"S Kim","year":"2008","unstructured":"Kim S, Yoon J, Yang J: Kernel approaches for genic interaction extraction. Bioinformatics 2008, 24: 118\u2013126.","journal-title":"Bioinformatics"},{"key":"3104_CR7","volume-title":"LBM (Short Papers), of CEUR Workshop Proceedings. CEUR-WS.org","author":"R Saetre","year":"2007","unstructured":"Saetre R, Sagae K, Tsujii J: Syntactic Features for Protein-Protein Interaction Extraction. In LBM (Short Papers), of CEUR Workshop Proceedings. CEUR-WS.org Edited by: Baker CJO, Su J. 2007., 319:"},{"key":"3104_CR8","volume-title":"Proceedings of Third International Symposium on Semantic Mining in Biomedicine (SMBM 08)","author":"S Van Landeghem","year":"2008","unstructured":"Van Landeghem S, Saeys Y, De Baets B, Peer Y: Extracting protein-protein interactions from text using rich feature vectors and feature selection. Proceedings of Third International Symposium on Semantic Mining in Biomedicine (SMBM 08) 2008."},{"key":"3104_CR9","volume-title":"Proceedings of the 1st International Symposium on Semantic Mining in Biomedicine","author":"J Xiao","year":"2005","unstructured":"Xiao J, Su J, Zhou G, Tan C: Protein-protein Interaction Extraction: A Supervised Learning Approach. Proceedings of the 1st International Symposium on Semantic Mining in Biomedicine 2005."},{"key":"3104_CR10","doi-asserted-by":"publisher","first-page":"284","DOI":"10.3115\/1610075.1610116","volume-title":"Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing","author":"A Yakushiji","year":"2006","unstructured":"Yakushiji A, Miyao Y, Ohta T, Tateisi Y, Tsujii J: Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction. In Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing. ACL; 2006:284\u2013292."},{"issue":"2","key":"3104_CR11","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/j.artmed.2004.07.016","volume":"33","author":"R Bunescu","year":"2005","unstructured":"Bunescu R, Ge R, Kate RJ, Marcotte EM, Mooney RJ, Ramani AK, Wong YW: Comparative experiments on learning information extractors for proteins and their interactions. Artificial Intelligence in Medicine 2005, 33(2):139\u2013155.","journal-title":"Artificial Intelligence in Medicine"},{"key":"3104_CR12","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1186\/1471-2105-8-50","volume":"8","author":"S Pyysalo","year":"2007","unstructured":"Pyysalo S, Ginter F, Heimonen J, Bj\u00f6rne J, Boberg J, J\u00e4rvinen J, Salakoski T: BioInfer: A Corpus for Information Extraction in the Biomedical Domain. BMC Bioinformatics 2007, 8: 50.","journal-title":"BMC Bioinformatics"},{"key":"3104_CR13","first-page":"31","volume-title":"Proceedings of the ICML-2005 Workshop on Learning Language in Logic (LLL05)","author":"C Nedellec","year":"2005","unstructured":"Nedellec C: Learning language in logic - genic interaction extraction challenge. Proceedings of the ICML-2005 Workshop on Learning Language in Logic (LLL05) 2005, 31\u201337."},{"key":"3104_CR14","first-page":"326","volume-title":"Pacific Symposium on Biocomputing","author":"J Ding","year":"2002","unstructured":"Ding J, Berleant D, Nettleton D, Wurtele ES: Mining MEDLINE: Abstracts, Sentences, or Phrases? Pacific Symposium on Biocomputing 2002, 326\u2013337."},{"key":"3104_CR15","first-page":"36","volume-title":"EvoBIO, of Lecture Notes in Computer Science","author":"T Fayruzov","year":"2008","unstructured":"Fayruzov T, De Cock M, Cornelis C, Hoste V: DEEPER: A Full Parsing Based Approach to Protein Relation Extraction. In EvoBIO, of Lecture Notes in Computer Science. Volume 4973. Edited by: Marchiori E, Moore JH. Springer; 2008:36\u201347."},{"issue":"19","key":"3104_CR16","doi-asserted-by":"publisher","first-page":"2507","DOI":"10.1093\/bioinformatics\/btm344","volume":"23","author":"Y Saeys","year":"2007","unstructured":"Saeys Y, Inza In, Larra\u00f1aga P: A review of feature selection techniques in bioinformatics. Bioinformatics 2007, 23(19):2507\u20132517.","journal-title":"Bioinformatics"},{"issue":"2","key":"3104_CR17","first-page":"99","volume":"2","author":"JH Eom","year":"2004","unstructured":"Eom JH, Zhang BT: PubMiner: Machine Learning-based Text Mining for Biomedical Information Analysis. Genomics & Informatics 2004, 2(2):99\u2013106.","journal-title":"Genomics & Informatics"},{"issue":"3","key":"3104_CR18","first-page":"273","volume":"20","author":"C Cortes","year":"1995","unstructured":"Cortes C, Vapnik V: Support-Vector Networks. Machine Learning 1995, 20(3):273\u2013297.","journal-title":"Machine Learning"},{"key":"3104_CR19","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/4175.001.0001","volume-title":"Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond (Adaptive Computation and Machine Learning)","author":"B Sch\u00f6lkopf","year":"2001","unstructured":"Sch\u00f6lkopf B, Smola AJ: Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond (Adaptive Computation and Machine Learning). The MIT Press; 2001."},{"key":"3104_CR20","first-page":"625","volume-title":"Advances in Neural Information Processing Systems 14","author":"M Collins","year":"2001","unstructured":"Collins M, Duffy N: Convolution Kernels for Natural Language. In Advances in Neural Information Processing Systems 14. Edited by: Dietterich TG, Becker S, Ghahramani Z. MIT Press; 2001:625\u2013632."},{"key":"3104_CR21","first-page":"563","volume-title":"NIPS","author":"H Lodhi","year":"2000","unstructured":"Lodhi H, Taylor JS, Cristianini N, Watkins CJCH: Text Classification using String Kernels. NIPS 2000, 563\u2013569."},{"key":"3104_CR22","volume-title":"Tech rep","author":"D Haussler","year":"1999","unstructured":"Haussler D: Convolution Kernels on Discrete Structures. Technical Report UCS-CRL-99\u201310. In Tech rep. UC Santa Cruz; 1999."},{"key":"3104_CR23","volume-title":"ECML","author":"A Moschitti","year":"2006","unstructured":"Moschitti A: Efficient Convolution Kernels for Dependency and Constituent Syntactic Trees. In ECML. Springer, Berlin; 2006."},{"key":"3104_CR24","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1145\/1458449.1458463","volume-title":"DTMBIO","author":"T Fayruzov","year":"2008","unstructured":"Fayruzov T, Cock MD, Cornelis C, Hoste V: The role of syntactic features in protein interaction extraction. DTMBIO 2008, 61\u201368."},{"key":"3104_CR25","unstructured":"The Stanford Parser: A statistical parser[ http:\/\/nlp.stanford.edu\/software\/lex-parser.shtml ]"},{"issue":"3","key":"3104_CR26","doi-asserted-by":"publisher","first-page":"130","DOI":"10.1108\/eb046814","volume":"14","author":"MF Porter","year":"1980","unstructured":"Porter MF: An algorithm for suffix stripping. Program 1980, 14(3):130\u2013137.","journal-title":"Program"},{"issue":"Suppl 3","key":"3104_CR27","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2105-9-S3-S6","volume":"9","author":"S Pyysalo","year":"2008","unstructured":"Pyysalo S, Airola A, Heimonen J, Bj\u00f6rne J, Ginter F, Salakoski T: Comparative Analysis of Five Protein-protein Interaction Corpora. BMC Bioinformatics, special issue 2008, 9(Suppl 3):S6.","journal-title":"BMC Bioinformatics, special issue"},{"key":"3104_CR28","volume-title":"LIBSVM: a library for support vector machines","author":"CC Chang","year":"2001","unstructured":"Chang CC, Lin CJ:LIBSVM: a library for support vector machines. 2001. [ http:\/\/www.csie.ntu.edu.tw\/~cjlin\/libsvm ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-374.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-10-374\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-374.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,13]],"date-time":"2025-02-13T06:02:06Z","timestamp":1739426526000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-10-374"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,11,12]]},"references-count":28,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2009,12]]}},"alternative-id":["3104"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-10-374","relation":{},"ISSN":["1471-2105"],"issn-type":[{"type":"electronic","value":"1471-2105"}],"subject":[],"published":{"date-parts":[[2009,11,12]]},"article-number":"374"}}