{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,11]],"date-time":"2023-01-11T21:27:38Z","timestamp":1673472458463},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"S2","license":[{"start":{"date-parts":[[2009,2,1]],"date-time":"2009-02-01T00:00:00Z","timestamp":1233446400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2009,2]]},"DOI":"10.1186\/1471-2105-10-s2-s4","type":"journal-article","created":{"date-parts":[[2009,2,5]],"date-time":"2009-02-05T11:29:10Z","timestamp":1233833350000},"source":"Crossref","is-referenced-by-count":13,"title":["Metadata mapping and reuse in caBIG\u2122"],"prefix":"10.1186","volume":"10","author":[{"given":"Isaac","family":"Kunz","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ming-Chin","family":"Lin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lewis","family":"Frey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,2,5]]},"reference":[{"key":"3263_CR1","first-page":"159","volume-title":"IMIA Yearbook of Medical Informatics","author":"LJ Frey","year":"2007","unstructured":"Frey LJ, Maojo V, Mitchell JA: Bioinformatics Linkage of Heterogeneous Clinical and Genomic Information in Support of Personalized Medicine. IMIA Yearbook of Medical Informatics 2007, 159\u2013166."},{"key":"3263_CR2","first-page":"51","volume-title":"Advances in Genome Sequencing Technology and Algorithms","author":"LJ Frey","year":"2007","unstructured":"Frey LJ, Maojo V, Mitchell JA: Genome Sequencing: a Complex Path to Personalized Medicine. In Advances in Genome Sequencing Technology and Algorithms. Artech House Publishers I; 2007:51\u201373."},{"key":"3263_CR3","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1126\/science.1112120","volume":"308","author":"KH Buetow","year":"2005","unstructured":"Buetow KH: Cyberinfrastructure: Empowering a \"Third Way\" in Biomedical Research. Science 2005, 308: 821\u2013824. 10.1126\/science.1112120","journal-title":"Science"},{"key":"3263_CR4","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1136\/jamia.1998.0050203","volume":"5","author":"RH Dolin","year":"1998","unstructured":"Dolin RH, Huff SM, Rocha RA, Spackman KA, Campbell KE: Evaluation of a \"lexically assign, logically refine\" strategy for semi-automated integration of overlapping terminologies. J Am Med Inform Assoc 1998, 5: 203\u2013213.","journal-title":"J Am Med Inform Assoc"},{"key":"3263_CR5","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1007\/978-3-540-24750-0_18","volume-title":"Handbook on Ontologies","author":"N Noy","year":"2004","unstructured":"Noy N: Tools for mapping and merging ontologies. In Handbook on Ontologies Edited by: Staab S, Studer R. 2004, 365\u2013384."},{"key":"3263_CR6","volume-title":"Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on Innovative Applications of Artificial Intelligence","author":"NF Noy","year":"2000","unstructured":"Noy NF, Musen MA: PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. In Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on Innovative Applications of Artificial Intelligence. AAAI Press\/The MIT Press; 2000."},{"key":"3263_CR7","doi-asserted-by":"publisher","first-page":"D187","DOI":"10.1093\/nar\/gkj161","volume":"34","author":"CH Wu","year":"2006","unstructured":"Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, et al.: The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucl Acids Res 2006, 34: D187\u2013191. 10.1093\/nar\/gkj161","journal-title":"Nucl Acids Res"},{"key":"3263_CR8","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.websem.2003.07.007","volume":"1","author":"J Golbeck","year":"2003","unstructured":"Golbeck J, Fragoso G, Hartel F, Hendler J, Parsia B, Oberthaler J: The national cancer institute's thesaurus and ontology. Journal of Web Semantics 2003, 1: 75\u201380.","journal-title":"Journal of Web Semantics"},{"key":"3263_CR9","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.jbi.2004.03.003","volume":"37","author":"Y Sun","year":"2004","unstructured":"Sun Y: Methods for automated concept mapping between medical databases. J Biomed Inform 2004, 37: 162\u2013178. 10.1016\/j.jbi.2004.03.003","journal-title":"J Biomed Inform"},{"key":"3263_CR10","first-page":"172","volume-title":"Proc Annu Symp Comput Appl Med Care","author":"RA Rocha","year":"1994","unstructured":"Rocha RA, Huff SM: Using digrams to map controlled medical vocabularies. Proc Annu Symp Comput Appl Med Care 1994, 172\u2013176."},{"key":"3263_CR11","first-page":"640","volume-title":"Proc AMIA Annu Fall Symp","author":"KA Spackman","year":"1997","unstructured":"Spackman KA, Campbell KE, Cote RA: SNOMED RT: a reference terminology for health care. Proc AMIA Annu Fall Symp 1997, 640\u2013644."},{"key":"3263_CR12","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1197\/jamia.M2522","volume":"15","author":"S Oster","year":"2008","unstructured":"Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, et al.: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. J Am Med Inform Assoc 2008, 15: 138\u2013149. 10.1197\/jamia.M2522","journal-title":"J Am Med Inform Assoc"},{"key":"3263_CR13","doi-asserted-by":"publisher","first-page":"1910","DOI":"10.1093\/bioinformatics\/btl272","volume":"22","author":"J Saltz","year":"2006","unstructured":"Saltz J, Oster S, Hastings S, Langella S, Kurc T, Sanchez W, Kher M, Manisundaram A, Shanbhag K, Covitz P: caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinformatics 2006, 22: 1910\u20131916. 10.1093\/bioinformatics\/btl272","journal-title":"Bioinformatics"},{"key":"3263_CR14","volume-title":"Information retrieval: Data Structures & Algorithms","author":"WB Frakes","year":"1992","unstructured":"Frakes WB, Baeza-Yates R: Information retrieval: Data Structures & Algorithms. Englewood Cliffs: Prentice Hall; 1992."},{"key":"3263_CR15","volume-title":"Information Retrieval","author":"CJv Rijsbergen","year":"1979","unstructured":"Rijsbergen CJv: Information Retrieval. London: Butterworths; 1979."},{"key":"3263_CR16","unstructured":"caCORE SDK[\n                    http:\/\/ncicb.nci.nih.gov\/NCICB\/infrastructure\/cacore_overview\n                    \n                  ]"},{"key":"3263_CR17","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1145\/96602.96604","volume":"22","author":"AaLJ Sheth","year":"1990","unstructured":"Sheth AaLJ: Federated database systems for managing distributed, heterogeneous, and autonomous databases. ACM Computing Surveys 1990, 22: 183\u2013230. 10.1145\/96602.96604","journal-title":"ACM Computing Surveys"},{"key":"3263_CR18","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1007\/978-3-540-24750-0_19","volume-title":"Handbook on Ontologies","author":"A Doan","year":"2004","unstructured":"Doan A, Madhavan J, Domingos P, Halevy A: Ontology Matching: A Machine Learning Approach. In Handbook on Ontologies Edited by: Staab S, Studer R. 2004, 385\u2013403."},{"key":"3263_CR19","first-page":"605","volume-title":"MedInfo","author":"KW Fung","year":"2007","unstructured":"Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S: Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. MedInfo 2007, 605\u2013609."},{"key":"3263_CR20","first-page":"555","volume-title":"AMIA Annu Symp Proc","author":"SK Nachimuthu","year":"2005","unstructured":"Nachimuthu SK, Lau LM: Applying hybrid algorithms for text matching to automated biomedical vocabulary mapping. AMIA Annu Symp Proc 2005, 555\u2013559."},{"key":"3263_CR21","first-page":"1042","volume-title":"AMIA Annu Symp Proc","author":"SK Nachimuthu","year":"2006","unstructured":"Nachimuthu SK, Woolstenhulme RD: Generalizability of hybrid search algorithms to map multiple biomedical vocabulary domains. AMIA Annu Symp Proc 2006, 1042."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-S2-S4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-10-S2-S4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-10-S2-S4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T02:16:20Z","timestamp":1548209780000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-10-S2-S4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,2]]},"references-count":21,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2009,2]]}},"alternative-id":["3263"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-10-s2-s4","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,2]]},"article-number":"S4"}}