{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,21]],"date-time":"2025-10-21T15:03:58Z","timestamp":1761059038817},"reference-count":23,"publisher":"Springer Science and Business Media LLC","issue":"S2","license":[{"start":{"date-parts":[[2010,4,1]],"date-time":"2010-04-01T00:00:00Z","timestamp":1270080000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2010,4]]},"DOI":"10.1186\/1471-2105-11-s2-s7","type":"journal-article","created":{"date-parts":[[2010,4,16]],"date-time":"2010-04-16T18:15:21Z","timestamp":1271441721000},"source":"Crossref","is-referenced-by-count":18,"title":["Learning an enriched representation from unlabeled data for protein-protein interaction extraction"],"prefix":"10.1186","volume":"11","author":[{"given":"Yanpeng","family":"Li","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaohua","family":"Hu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hongfei","family":"Lin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhihao","family":"Yang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2010,4,16]]},"reference":[{"key":"4024_CR1","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1093\/bib\/6.1.57","volume":"6","author":"AM Cohen","year":"2005","unstructured":"Cohen AM, Hersh WR: A survey of current work in biomedical text mining. Briefings in Bioinformatics 2005, 6: 57\u201371. 10.1093\/bib\/6.1.57","journal-title":"Briefings in Bioinformatics"},{"issue":"2","key":"4024_CR2","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/j.artmed.2004.07.016","volume":"33","author":"R Bunescu","year":"2005","unstructured":"Bunescu R, Ge R, Kate R, Marcotte E, Mooney R, Ramani A, Wong Y: Comparative Experiments on Learning Information Extractors for Proteins and their Interactions. Artificial Intelligence in Medicine 2005, 33(2):139\u2013155. 10.1016\/j.artmed.2004.07.016","journal-title":"Artificial Intelligence in Medicine"},{"key":"4024_CR3","volume-title":"BMC Bioinformatics","author":"S Pyysalo","year":"2007","unstructured":"Pyysalo S, Ginter F, Heimonen J, Bj\u00f6rne J, Boberg J, J\u00e4rvinen J, Salakoski T: BioInfer: A Corpus for Information Extraction in the Biomedical Domain. BMC Bioinformatics 2007, 8(50):."},{"key":"4024_CR4","doi-asserted-by":"publisher","first-page":"3206","DOI":"10.1093\/bioinformatics\/bth386","volume":"20","author":"DP Corney","year":"2004","unstructured":"Corney DP, Buxton BF, Langdon WB, Jones DT: BioRAT: extracting biological information from fulllength papers. Bioinformatics 2004, 20: 3206\u20133213. 10.1093\/bioinformatics\/bth386","journal-title":"Bioinformatics"},{"issue":"3","key":"4024_CR5","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/bioinformatics\/btl616","volume":"23","author":"K Fundel","year":"2007","unstructured":"Fundel K, Kuffner R, Zimmer R: RelEx-Relation extraction using dependency parse trees. Bioinformatics 2007, 23(3):365\u2013371. 10.1093\/bioinformatics\/btl616","journal-title":"Bioinformatics"},{"issue":"2","key":"4024_CR6","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1109\/TCBB.2007.070211","volume":"4","author":"X Hu","year":"2007","unstructured":"Hu X, Wu D: Data mining and predictive modeling of biomolecular network from biomedical literature databases. IEEE\/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 2007, 4(2):251\u2013263. 10.1109\/TCBB.2007.070211","journal-title":"IEEE\/ACM Transactions on Computational Biology and Bioinformatics (TCBB)"},{"key":"4024_CR7","volume-title":"Proceedings of the 11th Conference of the European Chapter of the Association for Computational Linguistics","author":"C Giuliano","year":"2006","unstructured":"Giuliano C, Lavelli A, Romano L: Exploiting Shallow Linguistic Information for Relation Extraction From Biomedical Literature. Proceedings of the 11th Conference of the European Chapter of the Association for Computational Linguistics 2006."},{"key":"4024_CR8","first-page":"724","volume-title":"Proceedings of Human Language Technology Conference and Conference on Empirical Methods in Natural Language Processing Association for Computational Linguistics","author":"R Bunescu","year":"2005","unstructured":"Bunescu R, Mooney R: A shortest path dependency kernel for relation extraction. Proceedings of Human Language Technology Conference and Conference on Empirical Methods in Natural Language Processing Association for Computational Linguistics 2005, 724\u2013731."},{"key":"4024_CR9","volume-title":"Second International Symposium on Languages in Biology and Medicine","author":"R S\u00e6tre","year":"2007","unstructured":"S\u00e6tre R, Sagae K, Tsujii J: Syntactic features for protein-protein interaction extraction. Second International Symposium on Languages in Biology and Medicine 2007. short papers short papers"},{"issue":"Suppl 11","key":"4024_CR10","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1471-2105-9-S11-S2","volume":"9","author":"A Airola","year":"2008","unstructured":"Airola A, Pyysalo S, Bj\u00f6rne J, Pahikkala T, Ginter F, Salakoski T: All-paths Graph Kernel for Protein-protein Interaction Extraction with Evaluation of Cross-corpus Learning. BMC Bioinformatics 2008, 9(Suppl 11):S2. 10.1186\/1471-2105-9-S11-S2","journal-title":"BMC Bioinformatics"},{"issue":"3","key":"4024_CR11","doi-asserted-by":"publisher","first-page":"394","DOI":"10.1093\/bioinformatics\/btn631","volume":"25","author":"Y Miyao","year":"2009","unstructured":"Miyao Y, S\u00e6tre R, Sagae K, Matsuzaki T, Tsujii J: Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction. Bioinformatics 2009, 25(3):394\u2013400. 10.1093\/bioinformatics\/btn631","journal-title":"Bioinformatics"},{"key":"4024_CR12","first-page":"101","volume-title":"Proceedings of the Third International Symposium on Semantic Mining in Biomedicine","author":"M Miwa","year":"2008","unstructured":"Miwa M, S\u00e6tre R, Miyao Y, Ohta T, Tsujii J: Combining Multiple Layers of Syntactic Information for Protein-Protein Interaction Extraction. Proceedings of the Third International Symposium on Semantic Mining in Biomedicine 2008, 101\u2013108."},{"key":"4024_CR13","first-page":"171","volume-title":"Advances in Neural Information Processing Systems 18 MIT Press","author":"R Bunescu","year":"2006","unstructured":"Bunescu R, Mooney R: Subsequence Kernels for Relation Extraction. Advances in Neural Information Processing Systems 18 MIT Press 2006, 171\u2013178."},{"issue":"8","key":"4024_CR14","doi-asserted-by":"publisher","first-page":"2464","DOI":"10.1093\/ietisy\/e89-d.8.2464","volume":"E89D","author":"T Mitsumori","year":"2006","unstructured":"Mitsumori T, Murata M, Fukuda Y, Doi K, Doi H: Extracting Protein-Protein Interaction Information from Biomedical Text with SVM. IEICE - Transactions on Information and Systems 2006, E89D(8):2464\u20132466. 10.1093\/ietisy\/e89-d.8.2464","journal-title":"IEICE - Transactions on Information and Systems"},{"key":"4024_CR15","first-page":"77","volume-title":"Proceedings of the Third International Symposium on Semantic Mining in Biomedicine","author":"S Van Landeghem","year":"2008","unstructured":"Van Landeghem S, Saeys Y, Peer Y Van de, De Baets B: Extracting Protein-Protein Interactions from Text using Rich Feature Vectors and Feature Selection. Proceedings of the Third International Symposium on Semantic Mining in Biomedicine 2008, 77\u201384."},{"issue":"1","key":"4024_CR16","doi-asserted-by":"publisher","first-page":"121","DOI":"10.3115\/1699510.1699527","volume":"1","author":"M Miwa","year":"2009","unstructured":"Miwa M, S\u00e6tre R, Miyao Y, Tsujii J: A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora. Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing 2009, 1(1):121\u2013130.","journal-title":"Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing"},{"key":"4024_CR17","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511809682","volume-title":"Kernel methods for pattern analysis","author":"J Taylor","year":"2004","unstructured":"Taylor J, Cristianini N: Vijay. In Kernel methods for pattern analysis. Cambridge Univ. Press; 2004."},{"key":"4024_CR18","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1186\/1471-2105-10-223","volume":"10","author":"Y Li","year":"2009","unstructured":"Li Y, Lin H, Yang Z: Incorporating Rich Background Knowledge for Gene Named Entity Classification and Recognition. BMC Bioinformatics 2009, 10: 223. 10.1186\/1471-2105-10-223","journal-title":"BMC Bioinformatics"},{"key":"4024_CR19","doi-asserted-by":"crossref","unstructured":"Li Y, Lin H, Yang Z: Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction. 2009 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2009) 396\u2013400.","DOI":"10.1109\/BIBM.2009.65"},{"issue":"Suppl 2","key":"4024_CR20","doi-asserted-by":"publisher","first-page":"S4","DOI":"10.1186\/gb-2008-9-s2-s4","volume":"9","author":"M Krallinger","year":"2008","unstructured":"Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A: Overview of the Protein-Protein Interaction Annotation Extraction Task of BioCreative II. Genome Biology 2008, 9(Suppl 2):S4\u20131. 10.1186\/gb-2008-9-s2-s4","journal-title":"Genome Biology"},{"issue":"Suppl 3","key":"4024_CR21","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2105-9-S3-S6","volume":"9","author":"S Pyysalo","year":"2008","unstructured":"Pyysalo S, Airola A, Heimonen J, Bj\u00f6rne J, Ginter F, Salakoski T: Comparative Analysis of Five Protein-protein Interaction Corpora. BMC Bioinformatics 2008, 9(Suppl 3):S6. 10.1186\/1471-2105-9-S3-S6","journal-title":"BMC Bioinformatics"},{"key":"4024_CR22","volume-title":"Proceedings of 15th Text REtrieval Conference (TREC)","author":"W Hersh","year":"2006","unstructured":"Hersh W, Cohen A, Roberts P, Rekapalli HK: TREC 2006 genomics track overview. Proceedings of 15th Text REtrieval Conference (TREC) 2006."},{"key":"4024_CR23","first-page":"7","volume-title":"Proceedings of the Second BioCreative Challenge Evaluation Workshop","author":"J Wilbur","year":"2007","unstructured":"Wilbur J, Smith L, Tanabe L: BioCreative 2. gene mention task. Proceedings of the Second BioCreative Challenge Evaluation Workshop 2007, 7\u201316."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-11-S2-S7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-11-S2-S7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-11-S2-S7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T07:40:20Z","timestamp":1548229220000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-11-S2-S7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,4]]},"references-count":23,"journal-issue":{"issue":"S2","published-print":{"date-parts":[[2010,4]]}},"alternative-id":["4024"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-11-s2-s7","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,4]]},"article-number":"S7"}}