{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,17]],"date-time":"2025-10-17T13:38:18Z","timestamp":1760708298799},"reference-count":50,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2011,4,30]],"date-time":"2011-04-30T00:00:00Z","timestamp":1304121600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-128","type":"journal-article","created":{"date-parts":[[2011,4,30]],"date-time":"2011-04-30T18:14:27Z","timestamp":1304187267000},"source":"Crossref","is-referenced-by-count":25,"title":["Phenotype Recognition with Combined Features and Random Subspace Classifier Ensemble"],"prefix":"10.1186","volume":"12","author":[{"given":"Bailing","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tuan D","family":"Pham","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,4,30]]},"reference":[{"key":"4486_CR1","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1126\/science.1100709","volume":"306","author":"ZE Perlman","year":"2004","unstructured":"Perlman ZE, Slack MD, Feng Y, Mitchison TJ, Wu LF, Altschuler SJ: Multidimensional drug profiling by automated microscopy. Science 2004, 306: 1194\u20131198. 10.1126\/science.1100709","journal-title":"Science"},{"key":"4486_CR2","doi-asserted-by":"publisher","first-page":"279","DOI":"10.2174\/138620703106298527","volume":"6","author":"JC Yarrow","year":"2003","unstructured":"Yarrow JC, Feng Y, Perlman ZE, Kirchhausen T, Mitchison TJ: Phenotypic screening of small molecule libraries by high throughput cell imaging. Comb Chem High Throughput Screening 2003, 6: 279\u2013286.","journal-title":"Comb Chem High Throughput Screening"},{"key":"4486_CR3","doi-asserted-by":"crossref","unstructured":"Boutros M, Kiger AA, Armknecht A, Kerr K, Hild M, Koch R, Haas SA, Paro R, Perrimon N: Genome-wide RNAi analysis of growth and viability in drosophila cells. Science 303: 832\u2013835.","DOI":"10.1126\/science.1091266"},{"issue":"17","key":"4486_CR4","doi-asserted-by":"publisher","first-page":"1827","DOI":"10.1093\/bioinformatics\/btn346","volume":"24","author":"H Peng","year":"2008","unstructured":"Peng H: Bioimage informatics: a new area of engineering biology. Bioinformatics 2008, 24(17):1827\u201336. 10.1093\/bioinformatics\/btn346","journal-title":"Bioinformatics"},{"key":"4486_CR5","first-page":"463","volume":"9","author":"MT Weirauch","year":"2008","unstructured":"Weirauch MT, Wong CK, Byrne AB, Stuart JM: Information-based methods for predicting gene function from systematic gene knock-downs. Bioinformatics 2008, 9: 463.","journal-title":"Bioinformatics"},{"key":"4486_CR6","doi-asserted-by":"publisher","first-page":"6499","DOI":"10.1073\/pnas.110149597","volume":"97","author":"JC Clemens","year":"2000","unstructured":"Clemens JC, Worby CA, Simonson-Leff N, Muda M, Maehama T, Hemmings BA, Dixon JE: Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. Proc Natl Acad Sci 2000, 97: 6499\u20136503. 10.1073\/pnas.110149597","journal-title":"Proc Natl Acad Sci"},{"key":"4486_CR7","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1038\/418244a","volume":"418","author":"GJ Hannon","year":"2002","unstructured":"Hannon GJ: RNA interference. Nature 2002, 418: 244\u2013251. 10.1038\/418244a","journal-title":"Nature"},{"key":"4486_CR8","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1038\/nrg1836","volume":"7","author":"CJ Echeverri","year":"2006","unstructured":"Echeverri CJ, Perrimon N: High-throughput RNAi screening in cultured cells: a user's guide. Nat Rev Genet 2006, 7: 373\u2013384.","journal-title":"Nat Rev Genet"},{"key":"4486_CR9","doi-asserted-by":"publisher","first-page":"1248","DOI":"10.1126\/science.1116008","volume":"309","author":"H Agaisse","year":"2005","unstructured":"Agaisse H, Burrack L, Philips J, Rubin E, Perrimon N, Higgins DE: Genome-wide RNAi screen for host factors required for intracellular bacterial infection. Science 2005, 309: 1248\u20131251. 10.1126\/science.1116008","journal-title":"Science"},{"issue":"1","key":"4486_CR10","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1038\/nrg1248","volume":"5","author":"AE Carpenter","year":"2004","unstructured":"Carpenter AE, Sabatini DM: Systematic genome-wide screens of gene function. Nature Reviews Genetics 2004, 5(1):11\u201322.","journal-title":"Nature Reviews Genetics"},{"key":"4486_CR11","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1177\/1087057107311223","volume":"13","author":"J Wang","year":"2008","unstructured":"Wang J, Zhou X, Bradley PL, Chang SF, Perrimon N, Wong STC: Cellular Phenotype Recognition for High-Content RNA Interference Genome-Wide Screening. J Biomol Screen 2008, 13: 29\u201339.","journal-title":"J Biomol Screen"},{"issue":"5","key":"4486_CR12","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1093\/bioinformatics\/btl680","volume":"23","author":"J Zhou","year":"2007","unstructured":"Zhou J, Peng H: Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinformatics 2007, 23(5):589\u2013596. 10.1093\/bioinformatics\/btl680","journal-title":"Bioinformatics"},{"key":"4486_CR13","first-page":"546","volume-title":"Vision Systems: Segmentation and Pattern Recognition","author":"N Orlov","year":"2007","unstructured":"Orlov N, Johnston J, Macura T, Shamir L, Goldberg I: Computer Vision for Microscopy Applications. In Vision Systems: Segmentation and Pattern Recognition. Edited by: Goro Obinata, Ashish Dutta. I-Tech, Vienna, Austria, June 2007; 2007:546."},{"issue":"1","key":"4486_CR14","first-page":"482","volume":"9","author":"TR Jones","year":"2008","unstructured":"Jones TR, Kang IH, Wheeler DB, Lindquist RA, Rapallo A, Sabatini DM, Golland P, Carpenter AE: CellProfiler Analysis: data exploration and analysis software for complex image-based screens. Bioinformatics 2008, 9(1):482.","journal-title":"Bioinformatics"},{"key":"4486_CR15","doi-asserted-by":"publisher","first-page":"943","DOI":"10.1007\/s11517-008-0380-5","volume":"46","author":"L Shamir","year":"2008","unstructured":"Shamir L, Orlov N, Eckley DM, Macura T, Goldberg I: IICBU 2008 - a proposed benchmark suite for biological image analysis. Medical & Biological Engineering & Computing 2008, 46: 943\u2013947.","journal-title":"Medical & Biological Engineering & Computing"},{"key":"4486_CR16","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1186\/1751-0473-3-13","volume":"3","author":"N Orlov","year":"2008","unstructured":"Orlov N, Shamir L, Macura T, Johnston J, Eckley DM, Goldberg I: WNDCHRM - An Open Source Utility for Biological Image Analysis. BMC - Source Code for Biology and Medicine 2008, 3: 13. 10.1186\/1751-0473-3-13","journal-title":"BMC - Source Code for Biology and Medicine"},{"key":"4486_CR17","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1109\/LISSA.2009.4906718","volume":"LiSSA2009","author":"L Shamir","year":"2009","unstructured":"Shamir L, Eckley DM, Delaney J: An Image Informatics Method for Automated Quantitative Analysis of Phenotype Visual Similarities. IEEE\/NIH Life Science Systems and Application Workshop 2009, LiSSA2009: 96\u201399.","journal-title":"IEEE\/NIH Life Science Systems and Application Workshop"},{"key":"4486_CR18","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.1093\/bioinformatics\/17.12.1213","volume":"17","author":"MV Boland","year":"2001","unstructured":"Boland MV, Murphy RF: A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 2001, 17: 1213\u20131223. 10.1093\/bioinformatics\/17.12.1213","journal-title":"Bioinformatics"},{"key":"4486_CR19","doi-asserted-by":"publisher","first-page":"366","DOI":"10.1002\/(SICI)1097-0320(19981101)33:3<366::AID-CYTO12>3.0.CO;2-R","volume":"33","author":"MV Boland","year":"1998","unstructured":"Boland MV, Markey M, Murphy RF: Automated Recognition of Patterns Characteristic of Subcellular Structures in Fluorescence Microscopy Images. Cytometry 1998, 33: 366\u2013375. 10.1002\/(SICI)1097-0320(19981101)33:3<366::AID-CYTO12>3.0.CO;2-R","journal-title":"Cytometry"},{"key":"4486_CR20","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1186\/1471-2105-5-78","volume":"5","author":"K Huang","year":"2004","unstructured":"Huang K, Murphy RF: Boosting accuracy of automated classification of fluorescence microscope images for location proteomics. BMC Bioinformatics 2004, 5: 78. 10.1186\/1471-2105-5-78","journal-title":"BMC Bioinformatics"},{"key":"4486_CR21","first-page":"110","volume":"8","author":"NA Hamilton","year":"2007","unstructured":"Hamilton NA, Pantelic RS, Hanson K, Teasdale RD: Fast automated cell phenotype image classification. Bioinformatics 2007, 8: 110.","journal-title":"Bioinformatics"},{"key":"4486_CR22","doi-asserted-by":"publisher","first-page":"1556","DOI":"10.1016\/j.eswa.2009.06.062","volume":"37","author":"L Nanni","year":"2010","unstructured":"Nanni L, Lumini A, Lin Y, Hsu C, Lin C: Fusion of systems for automated cell phenotype image classification. Expert Systems with Applications 2010, 37: 1556\u20131562. 10.1016\/j.eswa.2009.06.062","journal-title":"Expert Systems with Applications"},{"key":"4486_CR23","volume-title":"Digital Curvelet Transform: Strategy, Implementation and Experiments","author":"D Donoho","year":"1999","unstructured":"Donoho D, Duncan M: Digital Curvelet Transform: Strategy, Implementation and Experiments. Stanford University; 1999."},{"key":"4486_CR24","doi-asserted-by":"publisher","first-page":"670","DOI":"10.1109\/TIP.2002.1014998","volume":"11","author":"J Starck","year":"2002","unstructured":"Starck J, Candes E, Donoho D: The Curvelet transform for image denoising. IEEE Transactions Image Processing 2002, 11: 670\u2013684. 10.1109\/TIP.2002.1014998","journal-title":"IEEE Transactions Image Processing"},{"key":"4486_CR25","first-page":"2000","volume-title":"Curvelets: multiresolution representation, and scaling laws","author":"E Candes","year":"2000","unstructured":"Candes E, Donoho D: Curvelets: multiresolution representation, and scaling laws. Volume 4119. Edited by: Aldroubi A, Laine AF, Unser MA. Wavelet Applications in Signal and ImageProcessing VIII, Proceeding of the SPIE; 2000:2000."},{"key":"4486_CR26","doi-asserted-by":"publisher","first-page":"861","DOI":"10.1137\/05064182X","volume":"5","author":"E Candes","year":"2006","unstructured":"Candes E, Demanet L, Donoho D, Ying L: Fast discrete curvelet transforms. Multiscale Model Simul 2006, 5: 861\u2013899. 10.1137\/05064182X","journal-title":"Multiscale Model Simul"},{"issue":"2","key":"4486_CR27","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1109\/MSP.2009.935453","volume":"27","author":"J Ma","year":"2010","unstructured":"Ma J, Plonka G: The Curvelet Transform: A review of recent applications. IEEE Signal Processing Magazine 2010, 27(2):118\u2013133.","journal-title":"IEEE Signal Processing Magazine"},{"key":"4486_CR28","doi-asserted-by":"publisher","first-page":"927","DOI":"10.1117\/12.539906","volume":"5286","author":"L Ni","year":"2003","unstructured":"Ni L, Leng H: Curvelet transform and its application in image retrieval. 3rd International Symposium on Multispectral Image Processing and Pattern Recognition, Proceedings of SPIE 2003, 5286: 927\u2013930.","journal-title":"3rd International Symposium on Multispectral Image Processing and Pattern Recognition, Proceedings of SPIE"},{"key":"4486_CR29","volume-title":"Recent Advances in Face Recognition","author":"A Majumdar","year":"2008","unstructured":"Majumdar A, Ward R: Multiresolution methods in face recognition. In Recent Advances in Face Recognition Edited by: Kresimir Delac, Mislav Grgic, Marian Stewart Bartlett. 2008. ISBN: 978\u2013953\u20137619\u201334\u20133:InTech, Croatia ISBN: 978-953-7619-34-3:InTech, Croatia"},{"key":"4486_CR30","doi-asserted-by":"publisher","first-page":"2345","DOI":"10.1016\/j.sigpro.2009.03.007","volume":"89","author":"T Mandal","year":"2009","unstructured":"Mandal T, Wu QJ, Yuan Y: Curvelet based face recognition via dimension reduction. Signal Processing 2009, 89: 2345\u20132353. 10.1016\/j.sigpro.2009.03.007","journal-title":"Signal Processing"},{"key":"4486_CR31","volume-title":"IEEE 10th Workshop on Multimedia Signal Processing, 11-61, Cairns, Australia","author":"I Sumana","year":"2008","unstructured":"Sumana I, Islam M, Zhang D, Lu G: Content based image retrieval using curvelet transform. IEEE 10th Workshop on Multimedia Signal Processing, 11\u201361, Cairns, Australia 2008."},{"key":"4486_CR32","volume-title":"BMC Bioinformatics","author":"T Geback","year":"2009","unstructured":"Geback T, Koumoutsakos P: Edge detection in microscopy images using curvelets. BMC Bioinformatics 2009., 10:"},{"key":"4486_CR33","doi-asserted-by":"publisher","first-page":"786","DOI":"10.1109\/PROC.1979.11328","volume":"67","author":"R Haralick","year":"1979","unstructured":"Haralick R: Statistical and Structural Approaches to Texture. Proceedings of the IEEE 1979, 67: 786\u2013804.","journal-title":"Proceedings of the IEEE"},{"key":"4486_CR34","first-page":"210","volume":"8","author":"A Chebira","year":"2007","unstructured":"Chebira A, Barbotin Y, Jackson C, Merryman T, Srinivasa G, Murphy RF, Kovacevic J: A multiresolution approach to automated classification of protein subcellular location images. Bioinformatics 2007, 8: 210.","journal-title":"Bioinformatics"},{"key":"4486_CR35","doi-asserted-by":"publisher","DOI":"10.1002\/0471660264","volume-title":"Combining Pattern Classifiers: Methods and Algorithms","author":"LI Kuncheva","year":"2004","unstructured":"Kuncheva LI: Combining Pattern Classifiers: Methods and Algorithms. Wiley-Interscience; 2004."},{"issue":"2","key":"4486_CR36","doi-asserted-by":"publisher","first-page":"531","DOI":"10.1109\/TMI.2009.2037756","volume":"29","author":"LI Kuncheva","year":"2010","unstructured":"Kuncheva LI, Rodriguez JJ, Plumpton CO, Linden DE, Johnston SJ: Random subspace ensembles for fMRI classification. IEEE Trans Med Imaging 2010, 29(2):531\u201342.","journal-title":"IEEE Trans Med Imaging"},{"key":"4486_CR37","doi-asserted-by":"publisher","first-page":"832","DOI":"10.1109\/34.709601","volume":"20","author":"TK Ho","year":"1998","unstructured":"Ho TK: The random subspace method for constructing decision forests. IEEE Transactions on PAMI 1998, 20: 832\u2013844.","journal-title":"IEEE Transactions on PAMI"},{"key":"4486_CR38","doi-asserted-by":"publisher","first-page":"961","DOI":"10.1109\/18.57199","volume":"36","author":"I Daubechies","year":"1990","unstructured":"Daubechies I: The wavelet transform, time-frequency localisation and signal processing. IEEE Trans Inform Theory 1990, 36: 961\u20131005. 10.1109\/18.57199","journal-title":"IEEE Trans Inform Theory"},{"key":"4486_CR39","first-page":"429","volume":"93","author":"D Gabor","year":"1946","unstructured":"Gabor D: Theory of communication. J IEEE 1946, 93: 429\u2013457.","journal-title":"J IEEE"},{"key":"4486_CR40","doi-asserted-by":"publisher","first-page":"837","DOI":"10.1109\/34.531803","volume":"18","author":"B Manjunath","year":"1996","unstructured":"Manjunath B, Ma W: Texture Features for Browsing and Retrieval of Image Data. IEEE Trans on Pattern Analysis and Machine Intelligence 1996, 18: 837\u2013842. 10.1109\/34.531803","journal-title":"IEEE Trans on Pattern Analysis and Machine Intelligence"},{"key":"4486_CR41","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4757-2440-0","volume-title":"The Nature of Statistical Learning Theory","author":"V Vapnik","year":"1995","unstructured":"Vapnik V: The Nature of Statistical Learning Theory. Springer-Verlag; 1995."},{"key":"4486_CR42","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","volume":"45","author":"L Breiman","year":"2001","unstructured":"Breiman L: Random Forests. Machine Learning 2001, 45: 5\u201332. 10.1023\/A:1010933404324","journal-title":"Machine Learning"},{"key":"4486_CR43","first-page":"3049","volume-title":"International Conference on Pattern Recognition (ICPR)","author":"MJ Gangeh","year":"2010","unstructured":"Gangeh MJ, Kamel MS, Duin PW: Random Subspace Method in Text Categorization. International Conference on Pattern Recognition (ICPR) 2010, 3049\u20132052."},{"issue":"5","key":"4486_CR44","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1038\/nmeth1032","volume":"4","author":"LH Loo","year":"2007","unstructured":"Loo LH, Wu L, Altschuler SJ: Image-based multivariate profiling of drug responses from single cells. Nature Methods 2007, 4(5):445\u201353.","journal-title":"Nature Methods"},{"issue":"6","key":"4486_CR45","doi-asserted-by":"publisher","first-page":"2300","DOI":"10.1021\/pr7007626","volume":"7","author":"J Newberg","year":"2008","unstructured":"Newberg J, Murphy RF: A framework for the automated analysis of subcellular patterns in human protein atlas images. J Proteome Res 2008, 7(6):2300\u20138. 10.1021\/pr7007626","journal-title":"J Proteome Res"},{"key":"4486_CR46","volume-title":"IEEE International Conference on Computer Vision (ICCV)","author":"P Gehler","year":"2009","unstructured":"Gehler P, Nowozin S: On Feature Combination for Multiclass Object Classification. IEEE International Conference on Computer Vision (ICCV) 2009."},{"key":"4486_CR47","doi-asserted-by":"publisher","first-page":"780","DOI":"10.1109\/36.752194","volume":"37","author":"L Soh","year":"1999","unstructured":"Soh L, Tsatsoulis C: Texture Analysis of SAR Sea Ice Imagery Using Gray Level Co-Occurrence Matrices. IEEE Transactions on Geoscience and Remote Sensing 1999, 37: 780\u2013795. 10.1109\/36.752194","journal-title":"IEEE Transactions on Geoscience and Remote Sensing"},{"key":"4486_CR48","doi-asserted-by":"publisher","first-page":"45","DOI":"10.5589\/m02-004","volume":"28","author":"D Clausi","year":"2002","unstructured":"Clausi D: An analysis of co-occurrence texture statistics as a function of grey level quantization. Can J Remote Sensing 2002, 28: 45\u201362. 10.5589\/m02-004","journal-title":"Can J Remote Sensing"},{"key":"4486_CR49","first-page":"123","volume":"24","author":"L Breiman","year":"1996","unstructured":"Breiman L: Bagging predictors. Machine Learning 1996, 24: 123\u2013140.","journal-title":"Machine Learning"},{"key":"4486_CR50","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1006\/jcss.1997.1504","volume":"55","author":"Y Freund","year":"1997","unstructured":"Freund Y, Schapire RE: A Decision-Theoretic Generalization of on-Line Learning and an Application to Boosting. Journal of Computer and System Sciences 1997, 55: 119\u2013139. 10.1006\/jcss.1997.1504","journal-title":"Journal of Computer and System Sciences"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-128.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-128\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-128.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,10]],"date-time":"2019-06-10T11:49:58Z","timestamp":1560167398000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-128"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,4,30]]},"references-count":50,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4486"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-128","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,4,30]]},"article-number":"128"}}