{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,13]],"date-time":"2025-09-13T15:54:36Z","timestamp":1757778876988},"reference-count":55,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2011,5,14]],"date-time":"2011-05-14T00:00:00Z","timestamp":1305331200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-155","type":"journal-article","created":{"date-parts":[[2011,5,14]],"date-time":"2011-05-14T18:16:43Z","timestamp":1305397003000},"source":"Crossref","is-referenced-by-count":30,"title":["Histone modification profiles are predictive for tissue\/cell-type specific expression of both protein-coding and microRNA genes"],"prefix":"10.1186","volume":"12","author":[{"given":"Zhihua","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael Q","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,5,14]]},"reference":[{"key":"4562_CR1","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1146\/annurev.genom.7.080505.115623","volume":"7","author":"GA Maston","year":"2006","unstructured":"Maston GA, Evans SK, Green MR: Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet 2006, 7: 29\u201359. 10.1146\/annurev.genom.7.080505.115623","journal-title":"Annu Rev Genomics Hum Genet"},{"issue":"5","key":"4562_CR2","doi-asserted-by":"publisher","first-page":"887","DOI":"10.1016\/j.cell.2008.02.022","volume":"132","author":"DE Schones","year":"2008","unstructured":"Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K: Dynamic regulation of nucleosome positioning in the human genome. Cell 2008, 132(5):887\u2013898. 10.1016\/j.cell.2008.02.022","journal-title":"Cell"},{"key":"4562_CR3","volume-title":"Epigenetics","author":"CD Allis","year":"2007","unstructured":"Allis CD, Jenuwein T, Reinberg D: Epigenetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press; 2007."},{"issue":"4","key":"4562_CR4","doi-asserted-by":"publisher","first-page":"R33","DOI":"10.1186\/gb-2005-6-4-r33","volume":"6","author":"J Schug","year":"2005","unstructured":"Schug J, Schuller WP, Kappen C, Salbaum JM, Bucan M, Stoeckert CJ Jr: Promoter features related to tissue specificity as measured by Shannon entropy. Genome biol 2005, 6(4):R33. 10.1186\/gb-2005-6-4-r33","journal-title":"Genome biol"},{"issue":"1","key":"4562_CR5","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1006\/jmbi.1998.1700","volume":"278","author":"WW Wasserman","year":"1998","unstructured":"Wasserman WW, Fickett JW: Identification of regulatory regions which confer muscle-specific gene expression. J Mol Biol 1998, 278(1):167\u2013181. 10.1006\/jmbi.1998.1700","journal-title":"J Mol Biol"},{"issue":"9","key":"4562_CR6","doi-asserted-by":"publisher","first-page":"1559","DOI":"10.1101\/gr.180601","volume":"11","author":"W Krivan","year":"2001","unstructured":"Krivan W, Wasserman WW: A predictive model for regulatory sequences directing liver-specific transcription. Genome Res 2001, 11(9):1559\u20131566. 10.1101\/gr.180601","journal-title":"Genome Res"},{"issue":"5","key":"4562_CR7","doi-asserted-by":"publisher","first-page":"1560","DOI":"10.1073\/pnas.0406123102","volume":"102","author":"AD Smith","year":"2005","unstructured":"Smith AD, Sumazin P, Zhang MQ: Identifying tissue-selective transcription factor binding sites in vertebrate promoters. Proc Natl Acad Sci USA 2005, 102(5):1560\u20131565. 10.1073\/pnas.0406123102","journal-title":"Proc Natl Acad Sci USA"},{"key":"4562_CR8","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1038\/msb4100114","volume":"3","author":"AD Smith","year":"2007","unstructured":"Smith AD, Sumazin P, Zhang MQ: Tissue-specific regulatory elements in mammalian promoters. Mol Syst Biol 2007, 3: 73.","journal-title":"Mol Syst Biol"},{"issue":"16","key":"4562_CR9","doi-asserted-by":"publisher","first-page":"6275","DOI":"10.1073\/pnas.0508169103","volume":"103","author":"AD Smith","year":"2006","unstructured":"Smith AD, Sumazin P, Xuan Z, Zhang MQ: DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proc Natl Acad Sci USA 2006, 103(16):6275\u20136280. 10.1073\/pnas.0508169103","journal-title":"Proc Natl Acad Sci USA"},{"issue":"7243","key":"4562_CR10","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1038\/nature07829","volume":"459","author":"ND Heintzman","year":"2009","unstructured":"Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, et al.: Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 2009, 459(7243):108\u2013112. 10.1038\/nature07829","journal-title":"Nature"},{"issue":"5740","key":"4562_CR11","doi-asserted-by":"publisher","first-page":"1559","DOI":"10.1126\/science.1112014","volume":"309","author":"P Carninci","year":"2005","unstructured":"Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, et al.: The transcriptional landscape of the mammalian genome. Science 2005, 309(5740):1559\u20131563.","journal-title":"Science"},{"issue":"6","key":"4562_CR12","doi-asserted-by":"publisher","first-page":"626","DOI":"10.1038\/ng1789","volume":"38","author":"P Carninci","year":"2006","unstructured":"Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engstrom PG, Frith MC, et al.: Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 2006, 38(6):626\u2013635. 10.1038\/ng1789","journal-title":"Nat Genet"},{"issue":"7","key":"4562_CR13","doi-asserted-by":"publisher","first-page":"897","DOI":"10.1038\/ng.154","volume":"40","author":"Z Wang","year":"2008","unstructured":"Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, et al.: Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 2008, 40(7):897\u2013903. 10.1038\/ng.154","journal-title":"Nat Genet"},{"issue":"4","key":"4562_CR14","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1016\/j.cell.2007.05.009","volume":"129","author":"A Barski","year":"2007","unstructured":"Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K: High-resolution profiling of histone methylations in the human genome. Cell 2007, 129(4):823\u2013837. 10.1016\/j.cell.2007.05.009","journal-title":"Cell"},{"issue":"1","key":"4562_CR15","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1016\/j.stem.2008.11.011","volume":"4","author":"K Cui","year":"2009","unstructured":"Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K: Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 2009, 4(1):80\u201393. 10.1016\/j.stem.2008.11.011","journal-title":"Cell Stem Cell"},{"issue":"7","key":"4562_CR16","doi-asserted-by":"publisher","first-page":"2926","DOI":"10.1073\/pnas.0909344107","volume":"107","author":"R Karlic","year":"2010","unstructured":"Karlic R, Chung HR, Lasserre J, Vlahovicek K, Vingron M: Histone modification levels are predictive for gene expression. Proc Natl Acad Sci USA 2010, 107(7):2926\u20132931. 10.1073\/pnas.0909344107","journal-title":"Proc Natl Acad Sci USA"},{"key":"4562_CR17","doi-asserted-by":"publisher","first-page":"1493","DOI":"10.1101\/gr.109389.110","volume":"20","author":"A Pekowska","year":"2010","unstructured":"Pekowska A, Benoukraf T, Ferrier P, Spicuglia S: A unique H3K4me2 profile marks tissue-specific gene regulation. Genome Res 2010, 20: 1493\u20131502. 10.1101\/gr.109389.110","journal-title":"Genome Res"},{"issue":"2","key":"4562_CR18","doi-asserted-by":"publisher","first-page":"R17","DOI":"10.1186\/gb-2007-8-2-r17","volume":"8","author":"XY Zhao","year":"2007","unstructured":"Zhao XY, Xuan ZY, Zhang MQ: Boosting with stumps for predicting transcription start sites. Genome biology 2007, 8(2):R17. 10.1186\/gb-2007-8-2-r17","journal-title":"Genome biology"},{"issue":"2","key":"4562_CR19","doi-asserted-by":"publisher","first-page":"266","DOI":"10.1101\/gr.081638.108","volume":"19","author":"XW Wang","year":"2009","unstructured":"Wang XW, Xuan ZY, Zhao XY, Li YD, Zhang MQ: High-resolution human core-promoter prediction with CoreBoost_HM. Genome Res 2009, 19(2):266\u2013275.","journal-title":"Genome Res"},{"issue":"16","key":"4562_CR20","doi-asserted-by":"publisher","first-page":"6062","DOI":"10.1073\/pnas.0400782101","volume":"101","author":"AI Su","year":"2004","unstructured":"Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, et al.: A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 2004, 101(16):6062\u20136067. 10.1073\/pnas.0400782101","journal-title":"Proc Natl Acad Sci USA"},{"issue":"1","key":"4562_CR21","doi-asserted-by":"publisher","first-page":"198","DOI":"10.1093\/bioinformatics\/18.1.198","volume":"18","author":"VB Bajic","year":"2002","unstructured":"Bajic VB, Seah SH, Chong A, Zhang G, Koh JL, Brusic V: Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinformatics 2002, 18(1):198\u2013199. 10.1093\/bioinformatics\/18.1.198","journal-title":"Bioinformatics"},{"issue":"4","key":"4562_CR22","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1038\/ng780","volume":"29","author":"RV Davuluri","year":"2001","unstructured":"Davuluri RV, Grosse I, Zhang MQ: Computational identification of promoters and first exons in the human genome. Nat Genet 2001, 29(4):412\u2013417. 10.1038\/ng780","journal-title":"Nat Genet"},{"issue":"3","key":"4562_CR23","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1016\/j.cell.2008.07.020","volume":"134","author":"A Marson","year":"2008","unstructured":"Marson A, Levine SS, Cole MF, Frampton GM, Brambrink T, Johnstone S, Guenther MG, Johnston WK, Wernig M, Newman J, et al.: Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 2008, 134(3):521\u2013533. 10.1016\/j.cell.2008.07.020","journal-title":"Cell"},{"issue":"7153","key":"4562_CR24","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1038\/nature06008","volume":"448","author":"TS Mikkelsen","year":"2007","unstructured":"Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, et al.: Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448(7153):553\u2013560. 10.1038\/nature06008","journal-title":"Nature"},{"issue":"43","key":"4562_CR25","doi-asserted-by":"publisher","first-page":"15782","DOI":"10.1073\/pnas.0607617103","volume":"103","author":"TY Roh","year":"2006","unstructured":"Roh TY, Cuddapah S, Cui K, Zhao K: The genomic landscape of histone modifications in human T cells. Proc Natl Acad Sci USA 2006, 103(43):15782\u201315787. 10.1073\/pnas.0607617103","journal-title":"Proc Natl Acad Sci USA"},{"issue":"5","key":"4562_CR26","doi-asserted-by":"publisher","first-page":"1412","DOI":"10.1073\/pnas.0510310103","volume":"103","author":"S Saxonov","year":"2006","unstructured":"Saxonov S, Berg P, Brutlag DL: A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci USA 2006, 103(5):1412\u20131417. 10.1073\/pnas.0510310103","journal-title":"Proc Natl Acad Sci USA"},{"issue":"11","key":"4562_CR27","doi-asserted-by":"publisher","first-page":"1467","DOI":"10.1038\/nbt1032","volume":"22","author":"VB Bajic","year":"2004","unstructured":"Bajic VB, Tan SL, Suzuki Y, Sugano S: Promoter prediction analysis on the whole human genome. Nat Biotechnol 2004, 22(11):1467\u20131473. 10.1038\/nbt1032","journal-title":"Nat Biotechnol"},{"issue":"2","key":"4562_CR28","doi-asserted-by":"publisher","first-page":"310","DOI":"10.1101\/gr.6991408","volume":"18","author":"T Abeel","year":"2008","unstructured":"Abeel T, Saeys Y, Bonnet E, Rouze P, Van de Peer Y: Generic eukaryotic core promoter prediction using structural features of DNA. Genome Res 2008, 18(2):310\u2013323. 10.1101\/gr.6991408","journal-title":"Genome Res"},{"issue":"3","key":"4562_CR29","doi-asserted-by":"publisher","first-page":"R29","DOI":"10.1186\/gb-2010-11-3-r29","volume":"11","author":"C Cenik","year":"2010","unstructured":"Cenik C, Derti A, Mellor JC, Berriz GF, Roth FP: Genome-wide functional analysis of human 5'untranslated region introns. Genome biol 2010, 11(3):R29.","journal-title":"Genome biol"},{"issue":"8","key":"4562_CR30","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1111\/j.1365-2826.2007.01565.x","volume":"19","author":"H Nogami","year":"2007","unstructured":"Nogami H, Hoshino R, Ogasawara K, Miyamoto S, Hisano S: Region-specific expression and hormonal regulation of the first exon variants of rat prolactin receptor mRNA in rat brain and anterior pituitary gland. J Neuroendocrinol 2007, 19(8):583\u2013593. 10.1111\/j.1365-2826.2007.01565.x","journal-title":"J Neuroendocrinol"},{"issue":"11","key":"4562_CR31","doi-asserted-by":"publisher","first-page":"1529","DOI":"10.1016\/j.bcp.2006.07.005","volume":"72","author":"JD Turner","year":"2006","unstructured":"Turner JD, Schote AB, Macedo JA, Pelascini LP, Muller CP: Tissue specific glucocorticoid receptor expression, a role for alternative first exon usage? Biochem Pharmacol 2006, 72(11):1529\u20131537. 10.1016\/j.bcp.2006.07.005","journal-title":"Biochem Pharmacol"},{"issue":"1","key":"4562_CR32","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1101\/gr.5767907","volume":"17","author":"TY Roh","year":"2007","unstructured":"Roh TY, Wei G, Farrell CM, Zhao K: Genome-wide prediction of conserved and non-conserved enhancers by histone acetylation patterns. Genome Res 2007, 17(1):74\u201381.","journal-title":"Genome Res"},{"issue":"3","key":"4562_CR33","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1038\/nrg2270","volume":"9","author":"DE Schones","year":"2008","unstructured":"Schones DE, Zhao K: Genome-wide approaches to studying chromatin modifications. Nat Rev Genet 2008, 9(3):179\u2013191. 10.1038\/nrg2270","journal-title":"Nat Rev Genet"},{"issue":"1","key":"4562_CR34","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1016\/j.immuni.2008.12.009","volume":"30","author":"G Wei","year":"2009","unstructured":"Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, et al.: Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 2009, 30(1):155\u2013167. 10.1016\/j.immuni.2008.12.009","journal-title":"Immunity"},{"issue":"11","key":"4562_CR35","doi-asserted-by":"publisher","first-page":"1068","DOI":"10.1038\/nsmb840","volume":"11","author":"MC Lorincz","year":"2004","unstructured":"Lorincz MC, Dickerson DR, Schmitt M, Groudine M: Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol 2004, 11(11):1068\u20131075. 10.1038\/nsmb840","journal-title":"Nat Struct Mol Biol"},{"issue":"7146","key":"4562_CR36","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1038\/nature05874","volume":"447","author":"E Birney","year":"2007","unstructured":"Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, et al.: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447(7146):799\u2013816. 10.1038\/nature05874","journal-title":"Nature"},{"issue":"2","key":"4562_CR37","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1101\/gr.084541.108","volume":"19","author":"E Valen","year":"2009","unstructured":"Valen E, Pascarella G, Chalk A, Maeda N, Kojima M, Kawazu C, Murata M, Nishiyori H, Lazarevic D, Motti D, et al.: Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. Genome Res 2009, 19(2):255\u2013265.","journal-title":"Genome Res"},{"issue":"6","key":"4562_CR38","doi-asserted-by":"publisher","first-page":"1044","DOI":"10.1101\/gr.088773.108","volume":"19","author":"AL Brunner","year":"2009","unstructured":"Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, et al.: Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res 2009, 19(6):1044\u20131056. 10.1101\/gr.088773.108","journal-title":"Genome Res"},{"issue":"10","key":"4562_CR39","doi-asserted-by":"publisher","first-page":"1057","DOI":"10.1038\/nbt.1685","volume":"28","author":"A Portela","year":"2010","unstructured":"Portela A, Esteller M: Epigenetic modifications and human disease. Nat Biotechnol 2010, 28(10):1057\u20131068. 10.1038\/nbt.1685","journal-title":"Nat Biotechnol"},{"issue":"7303","key":"4562_CR40","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1038\/nature09165","volume":"466","author":"AK Maunakea","year":"2010","unstructured":"Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, et al.: Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 2010, 466(7303):253\u2013257. 10.1038\/nature09165","journal-title":"Nature"},{"issue":"3","key":"4562_CR41","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1038\/ng1966","volume":"39","author":"ND Heintzman","year":"2007","unstructured":"Heintzman ND, Stuart RK, Hon G, Fu YT, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu CX, Ching KA, et al.: Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 2007, 39(3):311\u2013318. 10.1038\/ng1966","journal-title":"Nat Genet"},{"issue":"5","key":"4562_CR42","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1101\/gad.1272505","volume":"19","author":"TY Roh","year":"2005","unstructured":"Roh TY, Cuddapah S, Zhao K: Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 2005, 19(5):542\u2013552. 10.1101\/gad.1272505","journal-title":"Genes Dev"},{"issue":"1","key":"4562_CR43","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1016\/j.cell.2007.05.042","volume":"130","author":"MG Guenther","year":"2007","unstructured":"Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA: A chromatin landmark and transcription initiation at most promoters in human cells. Cell 2007, 130(1):77\u201388. 10.1016\/j.cell.2007.05.042","journal-title":"Cell"},{"issue":"5909","key":"4562_CR44","doi-asserted-by":"publisher","first-page":"1845","DOI":"10.1126\/science.1162228","volume":"322","author":"LJ Core","year":"2008","unstructured":"Core LJ, Waterfall JJ, Lis JT: Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322(5909):1845\u20131848. 10.1126\/science.1162228","journal-title":"Science"},{"issue":"5871","key":"4562_CR45","doi-asserted-by":"publisher","first-page":"1791","DOI":"10.1126\/science.1150843","volume":"319","author":"LJ Core","year":"2008","unstructured":"Core LJ, Lis JT: Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 2008, 319(5871):1791\u20131792. 10.1126\/science.1150843","journal-title":"Science"},{"issue":"5909","key":"4562_CR46","doi-asserted-by":"publisher","first-page":"1849","DOI":"10.1126\/science.1162253","volume":"322","author":"AC Seila","year":"2008","unstructured":"Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA: Divergent transcription from active promoters. Science 2008, 322(5909):1849\u20131851. 10.1126\/science.1162253","journal-title":"Science"},{"issue":"2","key":"4562_CR47","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1016\/S0092-8674(04)00045-5","volume":"116","author":"DP Bartel","year":"2004","unstructured":"Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281\u2013297. 10.1016\/S0092-8674(04)00045-5","journal-title":"Cell"},{"issue":"2","key":"4562_CR48","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1016\/j.cell.2009.01.002","volume":"136","author":"DP Bartel","year":"2009","unstructured":"Bartel DP: MicroRNAs: target recognition and regulatory functions. Cell 2009, 136(2):215\u2013233. 10.1016\/j.cell.2009.01.002","journal-title":"Cell"},{"issue":"12","key":"4562_CR49","doi-asserted-by":"publisher","first-page":"1957","DOI":"10.1261\/rna.7135204","volume":"10","author":"X Cai","year":"2004","unstructured":"Cai X, Hagedorn CH, Cullen BR: Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 2004, 10(12):1957\u20131966. 10.1261\/rna.7135204","journal-title":"RNA"},{"issue":"20","key":"4562_CR50","doi-asserted-by":"publisher","first-page":"4051","DOI":"10.1038\/sj.emboj.7600385","volume":"23","author":"Y Lee","year":"2004","unstructured":"Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN: MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23(20):4051\u20134060. 10.1038\/sj.emboj.7600385","journal-title":"EMBO J"},{"issue":"12","key":"4562_CR51","doi-asserted-by":"publisher","first-page":"1097","DOI":"10.1038\/nsmb1167","volume":"13","author":"GM Borchert","year":"2006","unstructured":"Borchert GM, Lanier W, Davidson BL: RNA polymerase III transcribes human microRNAs. Nat Struct Mol Biol 2006, 13(12):1097\u20131101. 10.1038\/nsmb1167","journal-title":"Nat Struct Mol Biol"},{"issue":"7","key":"4562_CR52","doi-asserted-by":"publisher","first-page":"1401","DOI":"10.1016\/j.cell.2007.04.040","volume":"129","author":"P Landgraf","year":"2007","unstructured":"Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, et al.: A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 2007, 129(7):1401\u20131414. 10.1016\/j.cell.2007.04.040","journal-title":"Cell"},{"issue":"8","key":"4562_CR53","doi-asserted-by":"publisher","first-page":"R72","DOI":"10.1186\/gb-2005-6-8-r72","volume":"6","author":"Z Xuan","year":"2005","unstructured":"Xuan Z, Zhao F, Wang J, Chen G, Zhang MQ: Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome biol 2005, 6(8):R72. 10.1186\/gb-2005-6-8-r72","journal-title":"Genome biol"},{"key":"4562_CR54","volume-title":"The elements of satistical learning: Data mining, inference, and prediction","author":"T Hastie","year":"2000","unstructured":"Hastie T, Tibshirani R, Friedman J: The elements of satistical learning: Data mining, inference, and prediction. New York: Springer-Verlag; 2000."},{"key":"4562_CR55","volume-title":"Classification and regression trees","author":"L Breiman","year":"1984","unstructured":"Breiman L, Friedman J, Olshen R, Storne C: Classification and regression trees. Belmont, CA: Wadsworth International Group; 1984."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-155.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-155\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-155.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,6,19]],"date-time":"2020-06-19T04:37:04Z","timestamp":1592541424000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-155"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,14]]},"references-count":55,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4562"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-155","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,5,14]]},"article-number":"155"}}