{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T02:01:17Z","timestamp":1773021677680,"version":"3.50.1"},"reference-count":31,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2011,6,29]],"date-time":"2011-06-29T00:00:00Z","timestamp":1309305600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-266","type":"journal-article","created":{"date-parts":[[2011,6,30]],"date-time":"2011-06-30T18:39:03Z","timestamp":1309459143000},"source":"Crossref","is-referenced-by-count":83,"title":["DOSim: An R package for similarity between diseases based on Disease Ontology"],"prefix":"10.1186","volume":"12","author":[{"given":"Jiang","family":"Li","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Binsheng","family":"Gong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xi","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tao","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chao","family":"Wu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fan","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chunquan","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiang","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shaoqi","family":"Rao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xia","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,6,29]]},"reference":[{"key":"4683_CR1","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/S0022-510X(02)00256-3","volume":"203-204","author":"R Kalaria","year":"2002","unstructured":"Kalaria R: Similarities between Alzheimer's disease and vascular dementia. J Neurol Sci 2002, 203\u2013204: 29\u201334.","journal-title":"J Neurol Sci"},{"issue":"8","key":"4683_CR2","doi-asserted-by":"publisher","first-page":"e6536","DOI":"10.1371\/journal.pone.0006536","volume":"4","author":"G Hu","year":"2009","unstructured":"Hu G, Agarwal P: Human disease-drug network based on genomic expression profiles. PLoS One 2009, 4(8):e6536. 10.1371\/journal.pone.0006536","journal-title":"PLoS One"},{"key":"4683_CR3","first-page":"261","volume-title":"Computers in Cardiology","author":"F Wang","year":"2007","unstructured":"Wang F, Syeda-Mahmood T, Beymer D: Finding Disease Similarity by Combining ECG with Heart Auscultation Sound. Computers in Cardiology 2007, 261\u2013264."},{"issue":"21","key":"4683_CR4","doi-asserted-by":"publisher","first-page":"8685","DOI":"10.1073\/pnas.0701361104","volume":"104","author":"KI Goh","year":"2007","unstructured":"Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabasi AL: The human disease network. Proc Natl Acad Sci USA 2007, 104(21):8685\u20138690. 10.1073\/pnas.0701361104","journal-title":"Proc Natl Acad Sci USA"},{"issue":"4","key":"4683_CR5","doi-asserted-by":"publisher","first-page":"588","DOI":"10.1086\/514346","volume":"80","author":"VA McKusick","year":"2007","unstructured":"McKusick VA: Mendelian Inheritance in Man and its online version, OMIM. Am J Hum Genet 2007, 80(4):588\u2013604. 10.1086\/514346","journal-title":"Am J Hum Genet"},{"issue":"5","key":"4683_CR6","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1038\/ng0504-431","volume":"36","author":"KG Becker","year":"2004","unstructured":"Becker KG, Barnes KC, Bright TJ, Wang SA: The genetic association database. Nat Genet 2004, 36(5):431\u2013432. 10.1038\/ng0504-431","journal-title":"Nat Genet"},{"issue":"Suppl 2","key":"4683_CR7","doi-asserted-by":"publisher","first-page":"S14","DOI":"10.1186\/1471-2105-10-S2-S14","volume":"10","author":"YI Liu","year":"2009","unstructured":"Liu YI, Wise PH, Butte AJ: The \"etiome\": identification and clustering of human disease etiological factors. BMC Bioinformatics 2009, 10(Suppl 2):S14. 10.1186\/1471-2105-10-S2-S14","journal-title":"BMC Bioinformatics"},{"key":"4683_CR8","first-page":"893","volume-title":"Proc Annu Symp Comput Appl Med Care","author":"J Fowler","year":"1995","unstructured":"Fowler J, Kouramajian V, Maram S, Devadhar V: Automated MeSH indexing of the World-Wide Web. Proc Annu Symp Comput Appl Med Care 1995, 893\u2013897."},{"issue":"16","key":"4683_CR9","doi-asserted-by":"publisher","first-page":"3635","DOI":"10.1016\/j.febslet.2010.07.038","volume":"584","author":"SH Zhang","year":"2010","unstructured":"Zhang SH, Wu C, Li X, Chen X, Jiang W, Gong BS, Li J, Yan YQ: From phenotype to gene: detecting disease-specific gene functional modules via a text-based human disease phenotype network construction. FEBS Lett 2010, 584(16):3635\u20133643. 10.1016\/j.febslet.2010.07.038","journal-title":"FEBS Lett"},{"issue":"Database issue","key":"4683_CR10","first-page":"D258","volume":"32","author":"MA Harris","year":"2004","unstructured":"Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al.: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004, 32(Database issue):D258\u2013261.","journal-title":"Nucleic Acids Res"},{"key":"4683_CR11","volume-title":"Disease Ontology","author":"A Warren","year":"2006","unstructured":"Warren A, Kibbe J, Wolf W, Smith M, Zhu L, Lin S, Chisholm R: Disease Ontology. 2006."},{"issue":"Suppl 1","key":"4683_CR12","doi-asserted-by":"publisher","first-page":"S6","DOI":"10.1186\/1471-2164-10-S1-S6","volume":"10","author":"J Osborne","year":"2009","unstructured":"Osborne J, Flatow J, Holko M, Lin S, Kibbe W, Zhu L, Danila M, Feng G, Chisholm R: Annotating the human genome with Disease Ontology. BMC Genomics 2009, 10(Suppl 1):S6. 10.1186\/1471-2164-10-S1-S6","journal-title":"BMC Genomics"},{"issue":"12","key":"4683_CR13","doi-asserted-by":"publisher","first-page":"i63","DOI":"10.1093\/bioinformatics\/btp193","volume":"25","author":"P Du","year":"2009","unstructured":"Du P, Feng G, Flatow J, Song J, Holko M, Kibbe WA, Lin SM: From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinformatics 2009, 25(12):i63\u201368. 10.1093\/bioinformatics\/btp193","journal-title":"Bioinformatics"},{"issue":"7","key":"4683_CR14","doi-asserted-by":"publisher","first-page":"e1000443","DOI":"10.1371\/journal.pcbi.1000443","volume":"5","author":"C Pesquita","year":"2009","unstructured":"Pesquita C, Faria D, Falc\u00e3o AO, Lord P, Couto FM: Semantic Similarity in Biomedical Ontologies. PLoS Comput Biol 2009, 5(7):e1000443. 10.1371\/journal.pcbi.1000443","journal-title":"PLoS Comput Biol"},{"key":"4683_CR15","first-page":"448","volume":"1","author":"P Resnik","year":"1995","unstructured":"Resnik P: Using Information Content to Evaluate Semantic Similarity in a Taxonomy. Proceedings of the 14th International Joint Conference on Artificial Intelligence, Montreal 1995, 1: 448\u2013453.","journal-title":"Proceedings of the 14th International Joint Conference on Artificial Intelligence, Montreal"},{"key":"4683_CR16","first-page":"296","volume-title":"ICML '98: Proceedings of the Fifteenth International Conference on Machine Learning","author":"D Lin","year":"1998","unstructured":"Lin D: An Information-Theoretic Definition of Similarity. ICML '98: Proceedings of the Fifteenth International Conference on Machine Learning 1998, 296\u2013304."},{"key":"4683_CR17","volume-title":"Proceedings of the International Conference on Research in Computational Linguistics, Taiwan","author":"J Jiang","year":"1998","unstructured":"Jiang J, Conrath D: Semantic similarity based on corpus statistics and lexical taxonomy. Proceedings of the International Conference on Research in Computational Linguistics, Taiwan 1998."},{"key":"4683_CR18","volume-title":"BMC Bioinformatics","author":"FD A. Schlicker","year":"2006","unstructured":"A. Schlicker FD: A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinformatics 2006."},{"key":"4683_CR19","first-page":"37","volume-title":"In: Proc 10th Annual Bio-Ontologies Meeting","author":"DF C. Pesquita","year":"2007","unstructured":"C. Pesquita DF: Evaluating GO-based Semantic Similarity Measures. In: Proc 10th Annual Bio-Ontologies Meeting 2007, 37\u201340."},{"key":"4683_CR20","volume-title":"BMC Bioinformatics","author":"B A. Feltus","year":"2009","unstructured":"A. Feltus B, Li JW: Effectively Integrating Information Content and Structural Relationship to Improve the GO-based Similarity Measure Between Proteins. BMC Bioinformatics 2009."},{"key":"4683_CR21","first-page":"1274","volume-title":"Bioinformatics","author":"Z James","year":"2007","unstructured":"James Z, Wang ZD: A new method to measure the semantic similarity of GO terms. Bioinformatics 2007, 1274\u20131281."},{"key":"4683_CR22","volume-title":"Conference in Information and Knowledge Management","author":"F Couto","year":"2005","unstructured":"Couto F, Silva M, Coutinho P: Semantic Similarity over the Gene Ontology: Family Correlation and Selecting Disjunctive Ancestors. Conference in Information and Knowledge Management 2005."},{"issue":"10","key":"4683_CR23","doi-asserted-by":"publisher","first-page":"1275","DOI":"10.1093\/bioinformatics\/btg153","volume":"19","author":"PW Lord","year":"2003","unstructured":"Lord PW, Stevens RD, Brass A, Goble CA: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10):1275\u20131283. 10.1093\/bioinformatics\/btg153","journal-title":"Bioinformatics"},{"issue":"5","key":"4683_CR24","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1093\/bioinformatics\/btm563","volume":"24","author":"P Langfelder","year":"2008","unstructured":"Langfelder P, Zhang B, Horvath S: Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 2008, 24(5):719\u2013720. 10.1093\/bioinformatics\/btm563","journal-title":"Bioinformatics"},{"issue":"1","key":"4683_CR25","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1186\/1471-2105-8-166","volume":"8","author":"H Frohlich","year":"2007","unstructured":"Frohlich H, Speer N, Poustka A, BeiSZbarth T: GOSim: an R-package for computation of information theoretic GO similarities between terms and gene products. BMC Bioinformatics 2007, 8(1):166. 10.1186\/1471-2105-8-166","journal-title":"BMC Bioinformatics"},{"issue":"19","key":"4683_CR26","doi-asserted-by":"publisher","first-page":"e131","DOI":"10.1093\/nar\/gkp667","volume":"37","author":"C Li","year":"2009","unstructured":"Li C, Li X, Miao Y, Wang Q, Jiang W, Xu C, Li J, Han J, Zhang F, Gong B, et al.: SubpathwayMiner: a software package for flexible identification of pathways. Nucleic Acids Res 2009, 37(19):e131. 10.1093\/nar\/gkp667","journal-title":"Nucleic Acids Res"},{"issue":"11","key":"4683_CR27","first-page":"1113","volume":"58","author":"Y Tokoro","year":"2010","unstructured":"Tokoro Y: Cytology of malignant lymphoma. Rinsho Byori 2010, 58(11):1113\u20131120.","journal-title":"Rinsho Byori"},{"issue":"9","key":"4683_CR28","doi-asserted-by":"publisher","first-page":"2585","DOI":"10.1182\/blood-2010-09-271437","volume":"117","author":"E Iannitto","year":"2010","unstructured":"Iannitto E, Tripodo C: How I diagnose and treat splenic lymphomas. Blood 2010, 117(9):2585\u20132595.","journal-title":"Blood"},{"issue":"10","key":"4683_CR29","doi-asserted-by":"publisher","first-page":"2366","DOI":"10.1038\/nprot.2007.324","volume":"2","author":"MS Cline","year":"2007","unstructured":"Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, et al.: Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2007, 2(10):2366\u20132382. 10.1038\/nprot.2007.324","journal-title":"Nat Protoc"},{"issue":"9492","key":"4683_CR30","doi-asserted-by":"publisher","first-page":"1197","DOI":"10.1016\/S0140-6736(05)67483-1","volume":"366","author":"DW Haslam","year":"2005","unstructured":"Haslam DW, James WP: Obesity. Lancet 2005, 366(9492):1197\u20131209. 10.1016\/S0140-6736(05)67483-1","journal-title":"Lancet"},{"issue":"1","key":"4683_CR31","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1093\/bioinformatics\/btp618","volume":"26","author":"W Yu","year":"2009","unstructured":"Yu W, Clyne M, Khoury MJ, Gwinn M: Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations. Bioinformatics 2009, 26(1):145\u2013146.","journal-title":"Bioinformatics"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-266.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-266\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-266.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T09:59:14Z","timestamp":1548237554000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-266"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,6,29]]},"references-count":31,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4683"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-266","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,6,29]]},"article-number":"266"}}