{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,11]],"date-time":"2026-06-11T15:49:48Z","timestamp":1781192988645,"version":"3.54.1"},"reference-count":41,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2011,11,15]],"date-time":"2011-11-15T00:00:00Z","timestamp":1321315200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-448","type":"journal-article","created":{"date-parts":[[2011,11,16]],"date-time":"2011-11-16T13:59:28Z","timestamp":1321451968000},"source":"Crossref","is-referenced-by-count":44,"title":["A flexible framework for sparse simultaneous component based data integration"],"prefix":"10.1186","volume":"12","author":[{"given":"Katrijn","family":"Van Deun","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tom F","family":"Wilderjans","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert A","family":"van den Berg","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anestis","family":"Antoniadis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iven","family":"Van Mechelen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2011,11,15]]},"reference":[{"key":"5032_CR1","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/j.ab.2007.07.022","volume":"370","author":"MJ van der Werf","year":"2007","unstructured":"van der Werf MJ, Overkamp KM, Muilwijk B, Coulier L, Hankemeier T: Microbial metabolomics: Toward a platform with full metabolome coverage. Analytical Biochemistry 2007, 370: 17\u201325. 10.1016\/j.ab.2007.07.022","journal-title":"Analytical Biochemistry"},{"key":"5032_CR2","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1186\/1471-2105-10-34","volume":"10","author":"KA Le Cao","year":"2009","unstructured":"Le Cao KA, Martin P, Robert-Granie C, Besse P: Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics 2009, 10: 34. [ http:\/\/www.biomedcentral.com\/1471\u20132105\/10\/34 ] 10.1186\/1471-2105-10-34","journal-title":"BMC Bioinformatics"},{"issue":"5824","key":"5032_CR3","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1126\/science.1132067","volume":"316","author":"N Ishii","year":"2007","unstructured":"Ishii N, Nakahigashi K, Baba T, Robert M, Soga T, Kanai A, Hirasawa T, Naba M, Hirai K, Hoque A, Ho PY, Kakazu Y, Sugawara K, Igarashi S, Harada S, Masuda T, Sugiyama N, Togashi T, Hasegawa M, Takai Y, Yugi K, Arakawa K, Iwata N, Toya Y, Nakayama Y, Nishioka T, Shimizu K, Mori H, Tomita M: Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations. Science 2007, 316(5824):593\u2013597. [ http:\/\/www.sciencemag.org\/cgi\/content\/abstract\/316\/5824\/593 ] 10.1126\/science.1132067","journal-title":"Science"},{"key":"5032_CR4","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1186\/1471-2164-10-32","volume":"10","author":"M de Tayrac","year":"2009","unstructured":"de Tayrac M, Le S, Aubry M, Mosser J, Husson F: Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach. BMC Genomics 2009, 10: 32. 10.1186\/1471-2164-10-32","journal-title":"BMC Genomics"},{"key":"5032_CR5","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1186\/1471-2105-10-340","volume":"10","author":"R van den Berg","year":"2009","unstructured":"van den Berg R, Van Mechelen I, Wilderjans T, Van Deun K, Kiers H, Smilde A: Integrating functional genomics data using maximum likelihood based simultaneous component analysis. BMC Bioinformatics 2009, 10: 340. [ http:\/\/www.biomedcentral.com\/1471\u20132105\/10\/340 ] 10.1186\/1471-2105-10-340","journal-title":"BMC Bioinformatics"},{"key":"5032_CR6","doi-asserted-by":"publisher","first-page":"246","DOI":"10.1186\/1471-2105-10-246","volume":"10","author":"K Van Deun","year":"2009","unstructured":"Van Deun K, Smilde A, van der Werf M, Kiers H, Van Mechelen I: A structured overview of simultaneous component based data integration. BMC Bioinformatics 2009, 10: 246. [ http:\/\/www.biomedcentral.com\/1471\u20132105\/10\/246 ] 10.1186\/1471-2105-10-246","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"5032_CR7","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1348\/000711010X513263","volume":"64","author":"TF Wilderjans","year":"2011","unstructured":"Wilderjans TF, Ceulemans E, Van Mechelen I, van den Berg RA: Simultaneous analysis of coupled data matrices subject to different amounts of noise. British Journal of Mathematical and Statistical Psychology 2011, 64(2):277\u2013290. 10.1348\/000711010X513263","journal-title":"British Journal of Mathematical and Statistical Psychology"},{"key":"5032_CR8","doi-asserted-by":"publisher","first-page":"296","DOI":"10.1186\/1471-2105-11-296","volume":"11","author":"D Lee","year":"2010","unstructured":"Lee D, Lee W, Lee Y, Pawitan Y: Super-sparse principal component analyses for high-throughput genomic data. BMC Bioinformatics 2010, 11: 296. [ http:\/\/www.biomedcentral.com\/1471\u20132105\/11\/296 ] 10.1186\/1471-2105-11-296","journal-title":"BMC Bioinformatics"},{"key":"5032_CR9","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/j.2517-6161.1996.tb02080.x","volume":"58","author":"R Tibshirani","year":"1996","unstructured":"Tibshirani R: Regression Shrinkage and Selection via the Lasso. Journal of the Royal Statistical Society, Series B 1996, 58: 267\u2013288.","journal-title":"Journal of the Royal Statistical Society, Series B"},{"key":"5032_CR10","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1111\/j.1467-9868.2005.00503.x","volume":"67","author":"H Zou","year":"2005","unstructured":"Zou H, Hastie T: Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society, Series B 2005, 67: 301\u2013320. 10.1111\/j.1467-9868.2005.00503.x","journal-title":"Journal of the Royal Statistical Society, Series B"},{"key":"5032_CR11","first-page":"366","volume":"9","author":"R Jenatton","year":"2010","unstructured":"Jenatton R, Obozinski G, Bach F: Structured sparse principal component analysis. Journal of Machine Learning Research 2010, 9: 366\u2013373.","journal-title":"Journal of Machine Learning Research"},{"issue":"3","key":"5032_CR12","doi-asserted-by":"publisher","first-page":"531","DOI":"10.1198\/1061860032148","volume":"12","author":"I Jolliffe","year":"2003","unstructured":"Jolliffe I, Trendafilov N, Uddin M: A Modified Principal Component Technique Based on the LASSO. Journal of Computational & Graphical Statistics 2003, 12(3):531\u2013547. 10.1198\/1061860032148","journal-title":"Journal of Computational & Graphical Statistics"},{"issue":"3","key":"5032_CR13","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1093\/biostatistics\/kxp008","volume":"10","author":"DM Witten","year":"2009","unstructured":"Witten DM, Tibshirani R, Hastie T: A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 2009, 10(3):515\u2013534. [ http:\/\/biostatistics.oxfordjournals.org\/content\/10\/3\/515.abstract ] 10.1093\/biostatistics\/kxp008","journal-title":"Biostatistics"},{"issue":"2","key":"5032_CR14","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1198\/106186006X113430","volume":"15","author":"H Zou","year":"2006","unstructured":"Zou H, Hastie T, Tibshirani R: Sparse principal component analysis. Journal of Computational and Graphical Statistics 2006, 15(2):265\u2013286. 10.1198\/106186006X113430","journal-title":"Journal of Computational and Graphical Statistics"},{"key":"5032_CR15","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1002\/1099-128X(200005\/06)14:3<105::AID-CEM582>3.0.CO;2-I","volume":"14","author":"H Kiers","year":"2000","unstructured":"Kiers H: Towards a Standardized Notation and Terminology in Multiway Analysis. Journal of Chemometrics 2000, 14: 105\u2013122. 10.1002\/1099-128X(200005\/06)14:3<105::AID-CEM582>3.0.CO;2-I","journal-title":"Journal of Chemometrics"},{"key":"5032_CR16","doi-asserted-by":"publisher","first-page":"453","DOI":"10.1093\/biomet\/58.3.453","volume":"58","author":"KR Gabriel","year":"1971","unstructured":"Gabriel KR: The biplot graphic display of matrices with application to principal component analysis. Biometrika 1971, 58: 453\u2013467. 10.1093\/biomet\/58.3.453","journal-title":"Biometrika"},{"key":"5032_CR17","volume-title":"Principal component analysis","author":"IT Jolliffe","year":"2002","unstructured":"Jolliffe IT: Principal component analysis. New York: Springer; 2002."},{"key":"5032_CR18","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1080\/00401706.1970.10488634","volume":"12","author":"AE Hoerl","year":"1970","unstructured":"Hoerl AE, Kennard RW: Ridge Regression: Biased Estimation for Nonorthogonal Problems. Technometrics 1970, 12: 55\u201367. [ http:\/\/www.jstor.org\/stable\/1267351 ] 10.2307\/1267351","journal-title":"Technometrics"},{"key":"5032_CR19","first-page":"814","volume":"53","author":"M Kowalski","year":"2009","unstructured":"Kowalski M, Torr\u00e9sani B: Structured sparsity: from mixed norms to structured shrinkage. SPARS09-Signal Processing with Adaptive Sparse Structured Representations 2009, 53: 814\u2013861.","journal-title":"SPARS09-Signal Processing with Adaptive Sparse Structured Representations"},{"key":"5032_CR20","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1111\/j.1467-9868.2005.00532.x","volume":"68","author":"M Yuan","year":"2006","unstructured":"Yuan M, Lin Y: Model selection and estimation in regression with grouped variables. Journal of the Royal Statistical Society: Series B 2006, 68: 49\u201367. 10.1111\/j.1467-9868.2005.00532.x","journal-title":"Journal of the Royal Statistical Society: Series B"},{"key":"5032_CR21","volume-title":"Tech rep, Statistics Department, Stanford University","author":"J Friedman","year":"2010","unstructured":"Friedman J, Hastie T, Tibshirani R: A note on the group lasso and a sparse group lasso. Tech rep, Statistics Department, Stanford University 2010."},{"key":"5032_CR22","volume-title":"Least squares optimization in multivariate analysis","author":"JMF Ten Berge","year":"1993","unstructured":"Ten Berge JMF: Least squares optimization in multivariate analysis. Leiden: DSWO; 1993."},{"key":"5032_CR23","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1007\/978-3-642-46808-7_28","volume-title":"Information Systems and Data Analysis","author":"J de Leeuw","year":"1994","unstructured":"de Leeuw J: Block relaxation algorithms in statistics. In Information Systems and Data Analysis. Edited by: Bock HH, Lenski W, Richter MM. Berlin: Springer-Verlag; 1994:308\u2013325."},{"key":"5032_CR24","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1093\/oso\/9780198522850.003.0008","volume-title":"Recent advances in descriptive multivariate analysis","author":"WJ Heiser","year":"1995","unstructured":"Heiser WJ: Convergent computation by iterative majorization: theory and applications in multidimensional data analysis. In Recent advances in descriptive multivariate analysis. Edited by: Krzanowski WJ. Oxford: Oxford University Press; 1995:157\u2013189."},{"key":"5032_CR25","doi-asserted-by":"publisher","first-page":"1","DOI":"10.2307\/1390605","volume":"9","author":"K Lange","year":"2000","unstructured":"Lange K, Hunter DR, Yang I: Optimization transfer using surrogate objective functions. Journal of computational and graphical statistics 2000, 9: 1\u201320. 10.2307\/1390605","journal-title":"Journal of computational and graphical statistics"},{"key":"5032_CR26","doi-asserted-by":"publisher","first-page":"957","DOI":"10.1287\/opre.1050.0253","volume":"53","author":"K Van Deun","year":"2005","unstructured":"Van Deun K, Groenen PJF: Majorization algorithms for inspecting circles, ellipses, squares, rectangles, and rhombi. Operations Research 2005, 53: 957\u2013967. 10.1287\/opre.1050.0253","journal-title":"Operations Research"},{"key":"5032_CR27","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1038\/nrg1272","volume":"5","author":"AL Barabasi","year":"2004","unstructured":"Barabasi AL, Oltvai ZN: Network biology: understanding the cell's functional organization. Nature Review Genetics 2004, 5: 101\u2013113. 10.1038\/nrg1272","journal-title":"Nature Review Genetics"},{"issue":"12","key":"5032_CR28","doi-asserted-by":"publisher","first-page":"1520","DOI":"10.1093\/bioinformatics\/btq227","volume":"26","author":"S Hochreiter","year":"2010","unstructured":"Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, Gohlmann HWH, Shkedy Z, Clevert DA: FABIA: factor analysis for bicluster acquisition. Bioinformatics 2010, 26(12):1520\u20131527. 10.1093\/bioinformatics\/btq227","journal-title":"Bioinformatics"},{"issue":"2","key":"5032_CR29","doi-asserted-by":"publisher","first-page":"339","DOI":"10.1093\/biomet\/asp020","volume":"96","author":"J Huang","year":"2009","unstructured":"Huang J, Ma S, Xie H, Zhang CH: A group bridge approach for variable selection. Biometrika 2009, 96(2):339\u2013355. 10.1093\/biomet\/asp020","journal-title":"Biometrika"},{"key":"5032_CR30","volume-title":"Tech rep, Department of Statistics, University of California, Berkeley","author":"P Zhao","year":"2006","unstructured":"Zhao P, Rocha G, Yu B: Grouped and Hierarchical Model Selection through Composite Absolute Penalties. Tech rep, Department of Statistics, University of California, Berkeley 2006."},{"key":"5032_CR31","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1186\/1471-2105-8-60","volume":"8","author":"S Ma","year":"2007","unstructured":"Ma S, Song X, Huang J: Supervised group Lasso with applications to microarray data analysis. BMC Bioinformatics 2007, 8: 60. 10.1186\/1471-2105-8-60","journal-title":"BMC Bioinformatics"},{"key":"5032_CR32","first-page":"70","volume-title":"Journal of the Royal Statistical Society: Series B (Statistical Methodology)","author":"L Meier","year":"2008","unstructured":"Meier L, Van De Geer S, Buhlmann P: The group lasso for logistic regression. Journal of the Royal Statistical Society: Series B (Statistical Methodology) 2008, 70."},{"key":"5032_CR33","first-page":"375","volume-title":"Blockwise sparse regression. Statistica Sinica","author":"Y Kim","year":"2006","unstructured":"Kim Y, Kim J, Kim Y: Blockwise sparse regression. Statistica Sinica. 2006, 16: 375\u2013390."},{"key":"5032_CR34","doi-asserted-by":"publisher","first-page":"1086","DOI":"10.1016\/j.csda.2008.09.031","volume":"53","author":"T Wilderjans","year":"2009","unstructured":"Wilderjans T, Ceulemans E, Van Mechelen I: Simultaneous analysis of coupled data blocks differing in size: A comparison of two weighting schemes. Comput Stat Data Anal 2009, 53: 1086\u20131098. [ http:\/\/dl.acm.org\/citation.cfm?id=1497631.1497740 ] 10.1016\/j.csda.2008.09.031","journal-title":"Comput Stat Data Anal"},{"key":"5032_CR35","doi-asserted-by":"publisher","first-page":"3351","DOI":"10.1073\/pnas.0530258100","volume":"100","author":"O Alter","year":"2003","unstructured":"Alter O, Brown PO, Botstein D: Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. Proceedings of the National Academy of Sciences 2003, 100: 3351\u20133356. 10.1073\/pnas.0530258100","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"19","key":"5032_CR36","doi-asserted-by":"publisher","first-page":"2588","DOI":"10.1093\/bioinformatics\/btp439","volume":"25","author":"K Van Deun","year":"2009","unstructured":"Van Deun K, Hoijtink H, Thorrez L, Van Lommel L, Schuit F, Van Mechelen I: Testing the hypothesis of tissue selectivity: the intersection-union test and a Bayesian approach. Bioinformatics 2009, 25(19):2588\u20132594. 10.1093\/bioinformatics\/btp439","journal-title":"Bioinformatics"},{"issue":"3","key":"5032_CR37","doi-asserted-by":"publisher","first-page":"R27","DOI":"10.1186\/gb-2009-10-3-r27","volume":"10","author":"K Lemmens","year":"2009","unstructured":"Lemmens K, De Bie T, Dhollander T, De Keersmaecker S, Thijs I, Schoofs G, De Weerdt A, De Moor B, Vanderleyden J, Collado-Vides J, Engelen K, Marchal K: DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli. Genome Biology 2009, 10(3):R27. [ http:\/\/genomebiology.com\/2009\/10\/3\/R27 ] 10.1186\/gb-2009-10-3-r27","journal-title":"Genome Biology"},{"key":"5032_CR38","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1016\/S0167-9473(02)00142-1","volume":"41","author":"HAL Kiers","year":"2002","unstructured":"Kiers HAL: Setting up alternating least squares and iterative majorization algorithms for solving various matrix optimization problems. Computational Statistics and Data Analysis 2002, 41: 157\u2013170. 10.1016\/S0167-9473(02)00142-1","journal-title":"Computational Statistics and Data Analysis"},{"key":"5032_CR39","volume-title":"Iterative majorization algorithms for minimizing loss functions in classification","author":"PJF Groenen","year":"2002","unstructured":"Groenen PJF: Iterative majorization algorithms for minimizing loss functions in classification. Working paper presented at the 8th conference of the IFCS, Krakow, Poland; 2002."},{"key":"5032_CR40","volume-title":"Modern Multidimensional Scaling: Theory and Applications. Springer series in statistics","author":"I Borg","year":"2005","unstructured":"Borg I, Groenen PJF: Modern Multidimensional Scaling: Theory and Applications. Springer series in statistics. 2nd edition. New York: Springer-Verlag; 2005.","edition":"2"},{"key":"5032_CR41","doi-asserted-by":"publisher","DOI":"10.1002\/0471721182","volume-title":"Finite mixture models\/Geoffrey McLachlan, David Peel","author":"GJ McLachlan","year":"2000","unstructured":"McLachlan GJ, Peel D:Finite mixture models\/Geoffrey McLachlan, David Peel. Wiley, New York; Chichester; 2000. [ http:\/\/www.loc.gov\/catdir\/toc\/onix07\/00043324.html ]"}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-448.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-448\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-448.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,14]],"date-time":"2025-03-14T03:45:41Z","timestamp":1741923941000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-448"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,11,15]]},"references-count":41,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["5032"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-448","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,11,15]]},"article-number":"448"}}