{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,19]],"date-time":"2025-11-19T11:27:07Z","timestamp":1763551627379},"reference-count":56,"publisher":"Springer Science and Business Media LLC","issue":"S1","license":[{"start":{"date-parts":[[2011,2,15]],"date-time":"2011-02-15T00:00:00Z","timestamp":1297728000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-s1-s19","type":"journal-article","created":{"date-parts":[[2011,2,18]],"date-time":"2011-02-18T15:02:47Z","timestamp":1298041367000},"source":"Crossref","is-referenced-by-count":7,"title":["Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception"],"prefix":"10.1186","volume":"12","author":[{"given":"Xiaoning","family":"Qian","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Byung-Jun","family":"Yoon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,2,15]]},"reference":[{"key":"4377_CR1","unstructured":"Joint United Nations Programme on HIV\/AIDS: Overview of the global AIDS epidemic 2006 Report on the global AIDS epidemic. ISBN 9291734799 2006."},{"issue":"5112","key":"4377_CR2","doi-asserted-by":"publisher","first-page":"1273","DOI":"10.1126\/science.8493571","volume":"260","author":"R Weiss","year":"1993","unstructured":"Weiss R: How does HIV cause AIDS? Science 1993, 260(5112):1273\u20131279. 10.1126\/science.8493571","journal-title":"Science"},{"key":"4377_CR3","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1146\/annurev.med.60.041807.123549","volume":"60","author":"D Douek","year":"2009","unstructured":"Douek D, Roederer M, Koup R: Emerging concepts in the immunopathogenesis of AIDS. Annu Rev Med 2009, 60: 471\u2013484. 10.1146\/annurev.med.60.041807.123549","journal-title":"Annu Rev Med"},{"key":"4377_CR4","unstructured":"HIV Sequence Compendium 2008 Introduction Various 2008. [\n                    http:\/\/www.hiv.lanl.gov\/content\/sequence\/HIV\/COMPENDIUM\/2008\/frontmatter.pdf\n                    \n                  ]"},{"issue":"5309","key":"4377_CR5","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1126\/science.276.5309.51","volume":"276","author":"J Moore","year":"1997","unstructured":"Moore J: Coreceptors: implications for HIV pathogenesis and therapy. Science 1997, 276(5309):51\u201352. 10.1126\/science.276.5309.51","journal-title":"Science"},{"issue":"Database","key":"4377_CR6","doi-asserted-by":"publisher","first-page":"D417","DOI":"10.1093\/nar\/gkn708","volume":"37","author":"W Fu","year":"2009","unstructured":"Fu W, Sanders-Beer B, Katz K, Maglott D, KD KP, Ptak R: Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res 2009, 37(Database):D417\u2013422. 10.1093\/nar\/gkn708","journal-title":"Nucleic Acids Res"},{"issue":"12","key":"4377_CR7","doi-asserted-by":"publisher","first-page":"1497","DOI":"10.1089\/aid.2008.0113","volume":"24","author":"R Ptak","year":"2008","unstructured":"Ptak R, Fu W, Sanders-Beer B, Dickerson J, Pinney J, Robertson D, Rozanov M, Katz K, Maglott D, Pruitt K, et al.: Cataloguing the HIV type 1 human protein interaction network. AIDS Res Hum Retroviruses 2008, 24(12):1497\u20131502. 10.1089\/aid.2008.0113","journal-title":"AIDS Res Hum Retroviruses"},{"issue":"5865","key":"4377_CR8","doi-asserted-by":"publisher","first-page":"921","DOI":"10.1126\/science.1152725","volume":"319","author":"A Brass","year":"2008","unstructured":"Brass A, Dykxhoorn D, Benita Y, Yan N, Engelman A, Xavier R, Lieberman J, Elledge S: Identification of host proteins required for HIV infection through a functional genomic screen. Science 2008, 319(5865):921\u2013926. 10.1126\/science.1152725","journal-title":"Science"},{"key":"4377_CR9","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1016\/j.cell.2008.07.032","volume":"135","author":"R Konig","year":"2008","unstructured":"Konig R, Zhou Y, Elleder D, Diamond T, Bonamy G, Irelan J, Chiang C, Tu B, Jesus PD, Lilley C, et al.: Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. Cell 2008, 135: 49\u201360. 10.1016\/j.cell.2008.07.032","journal-title":"Cell"},{"issue":"5","key":"4377_CR10","doi-asserted-by":"publisher","first-page":"495","DOI":"10.1016\/j.chom.2008.10.004","volume":"4","author":"H Zhou","year":"2008","unstructured":"Zhou H, Xu M, Huang Q, Gates A, Zhang X, Castle J, Stec E, Ferrer M, Strulovici B, Hazuda D, et al.: Genome-scale RNAi screen for host factors required for HIV replication. Cell Host Microbe 2008, 4(5):495\u2013504. 10.1016\/j.chom.2008.10.004","journal-title":"Cell Host Microbe"},{"key":"4377_CR11","volume-title":"AIDS","author":"J Pinney","year":"2009","unstructured":"Pinney J, Dickerson J, Fu W, Sanders-Beer B, Ptak R, Robertson D: HIV-host interactions: a map of viral perturbation of the host system. AIDS 2009."},{"key":"4377_CR12","first-page":"516","volume-title":"Pac Symp Biocomput, Volume 14","author":"O Tastan","year":"2009","unstructured":"Tastan O, Qi Y, Carbonell J, J JKS: Prediction of interactions between HIV-1 and human proteins by information integration. Pac Symp Biocomput, Volume 14 2009, 516\u2013527."},{"issue":"Suppl 3","key":"4377_CR13","doi-asserted-by":"publisher","first-page":"S30","DOI":"10.1186\/1471-2164-10-S3-S30","volume":"10","author":"S Balakrishnan","year":"2009","unstructured":"Balakrishnan S, Tastan O, Carbonell J, Klein-Seetharaman J: Alternative paths in HIV-1 targeted human signal transduction pathways. BMC Genomics 2009, 10(Suppl 3):S30. 10.1186\/1471-2164-10-S3-S30","journal-title":"BMC Genomics"},{"key":"4377_CR14","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1186\/1471-2180-9-164","volume":"9","author":"F Lin","year":"2009","unstructured":"Lin F, Pan C, Yang J, Chuang T, Chen F: CAPIH: A web interface for comparative analyses and visualization of host-HIV protein-protein interactions. BMC Microbiol 2009, 9: 164. 10.1186\/1471-2180-9-164","journal-title":"BMC Microbiol"},{"issue":"5346","key":"4377_CR15","doi-asserted-by":"publisher","first-page":"2141","DOI":"10.1126\/science.278.5346.2141","volume":"278","author":"J McCune","year":"1997","unstructured":"McCune J: AIDS RESEARCH: Animal models of HIV-1 disease. Science 1997, 278(5346):2141\u20132142. 10.1126\/science.278.5346.2141","journal-title":"Science"},{"issue":"3","key":"4377_CR16","doi-asserted-by":"publisher","first-page":"293","DOI":"10.2174\/157016206777709410","volume":"4","author":"M Zink","year":"2006","unstructured":"Zink M, Laast V, Helke K, Brice A, Barber S, Clements J, Mankowski J: From mice to macaques\u2013animal models of HIV nervous system disease. Curr HIV Res 2006, 4(3):293\u2013305. 10.2174\/157016206777709410","journal-title":"Curr HIV Res"},{"issue":"20","key":"4377_CR17","doi-asserted-by":"publisher","first-page":"11394","DOI":"10.1073\/pnas.1534710100","volume":"100","author":"B Kelley","year":"2003","unstructured":"Kelley B, Sharan R, Karp R, Sittler T, Root D, Stockwell B, Ideker T: Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc Natl Acad Sci USA 2003, 100(20):11394\u201311399. 10.1073\/pnas.1534710100","journal-title":"Proc Natl Acad Sci USA"},{"key":"4377_CR18","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nbt1196","volume":"24","author":"R Sharan","year":"2006","unstructured":"Sharan R, Ideker T: Modeling cellular machinery through biological network comparison. Nat Biotechnol 2006, 24: 427\u2013433. 10.1038\/nbt1196","journal-title":"Nat Biotechnol"},{"key":"4377_CR19","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1101\/gr.071852.107","volume":"18","author":"T Ideker","year":"2008","unstructured":"Ideker T, Sharan R: Protein networks in disease. Genome Research 2008, 18: 644\u2013652. 10.1101\/gr.071852.107","journal-title":"Genome Research"},{"issue":"9","key":"4377_CR20","doi-asserted-by":"publisher","first-page":"1169","DOI":"10.1101\/gr.5235706","volume":"16","author":"J Flannick","year":"2006","unstructured":"Flannick J, Novak A, Srinivasan B, McAdams H, Batzoglou S: Gr\u00e6mlin: general and robust alignment of multiple large interaction networks. Genome Res 2006, 16(9):1169\u20131181. 10.1101\/gr.5235706","journal-title":"Genome Res"},{"issue":"13","key":"4377_CR21","doi-asserted-by":"publisher","first-page":"1631","DOI":"10.1093\/bioinformatics\/btm156","volume":"23","author":"Z Li","year":"2007","unstructured":"Li Z, Zhang S, Wang Y, Zhang X, Chen L: Alignment of molecular networks by integer quadratic programming. Bioinformatics 2007, 23(13):1631\u20131639. 10.1093\/bioinformatics\/btm156","journal-title":"Bioinformatics"},{"key":"4377_CR22","volume-title":"Proc of the 10th Annu Int Conf Res Comput Mol Bio (RECOMB 2008)","author":"M Kalaev","year":"2008","unstructured":"Kalaev M, Bafna V, Sharan R: Fast and accurate alignment of multiple protein networks. Proc of the 10th Annu Int Conf Res Comput Mol Bio (RECOMB 2008) 2008."},{"issue":"35","key":"4377_CR23","doi-asserted-by":"publisher","first-page":"12763","DOI":"10.1073\/pnas.0806627105","volume":"105","author":"R Singh","year":"2008","unstructured":"Singh R, Xu J, Berger B: Global alignment of multiple protein interaction networks with application to functional orthology detection. Proc Natl Acad Sci USA 2008, 105(35):12763\u201312768. 10.1073\/pnas.0806627105","journal-title":"Proc Natl Acad Sci USA"},{"issue":"Suppl 1","key":"4377_CR24","doi-asserted-by":"publisher","first-page":"S59","DOI":"10.1186\/1471-2105-10-S1-S59","volume":"10","author":"G Klau","year":"2009","unstructured":"Klau G: A new graph-based method for pairwise global network alignment. BMC Bioinformatics 2009, 10(Suppl 1):S59. 10.1186\/1471-2105-10-S1-S59","journal-title":"BMC Bioinformatics"},{"key":"4377_CR25","doi-asserted-by":"publisher","first-page":"i259","DOI":"10.1093\/bioinformatics\/btp196","volume":"25","author":"M Zaslavskiy","year":"2009","unstructured":"Zaslavskiy M, Bach F, Vert J: Global alignment of protein-protein interaction networks by graph matching methods. Bioinformatics 2009, 25: i259-i267. 10.1093\/bioinformatics\/btp196","journal-title":"Bioinformatics"},{"key":"4377_CR26","doi-asserted-by":"publisher","first-page":"i253","DOI":"10.1093\/bioinformatics\/btp203","volume":"25","author":"C Liao","year":"2009","unstructured":"Liao C, Lu K, Baym M, Singh R, Berger B: IsoRankN: spectral methods for global alignment of multiple protein networks. Bioinformatics 2009, 25: i253-i258. 10.1093\/bioinformatics\/btp203","journal-title":"Bioinformatics"},{"key":"4377_CR27","first-page":"99","volume-title":"Pac Symp Biocomput, Volume 14","author":"W Tian","year":"2009","unstructured":"Tian W, Samatova N: Pairwise alignment of interaction networks by fast identification of maximal conserved patterns. Pac Symp Biocomput, Volume 14 2009, 99\u2013110."},{"key":"4377_CR28","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1186\/1471-2105-3-34","volume":"3","author":"M Steffen","year":"2002","unstructured":"Steffen M, Petti A, Aach J, D\u2019haeseleer P, Church G: Automated modelling of signal transduction networks. BMC Bioinformatics 2002, 3: 34. 10.1186\/1471-2105-3-34","journal-title":"BMC Bioinformatics"},{"key":"4377_CR29","doi-asserted-by":"publisher","first-page":"i200","DOI":"10.1093\/bioinformatics\/bth919","volume":"20 Suppl 1","author":"M Koyut\u00fcrk","year":"2004","unstructured":"Koyut\u00fcrk M, Grama A, Szpankowski W: An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics 2004, 20 Suppl 1: i200-i207. 10.1093\/bioinformatics\/bth919","journal-title":"Bioinformatics"},{"issue":"16","key":"4377_CR30","doi-asserted-by":"publisher","first-page":"3401","DOI":"10.1093\/bioinformatics\/bti554","volume":"21","author":"R Pinter","year":"2005","unstructured":"Pinter R, Rokhlenko O, Yeger-Lotem E, Ziv-Ukelson M: Alignment of metabolic pathways. Bioinformatics 2005, 21(16):3401\u20133408. 10.1093\/bioinformatics\/bti554","journal-title":"Bioinformatics"},{"issue":"6","key":"4377_CR31","doi-asserted-by":"publisher","first-page":"1974","DOI":"10.1073\/pnas.0409522102","volume":"102","author":"R Sharan","year":"2005","unstructured":"Sharan R, Suthram S, Kelley R, Kuhn T, McCuine S, Uetz P, Sittler T, Karp R, Ideker T: Conserved patterns of protein interaction in multiple species. Proc Natl Acad Sci USA 2005, 102(6):1974\u20131979. 10.1073\/pnas.0409522102","journal-title":"Proc Natl Acad Sci USA"},{"key":"4377_CR32","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1089\/cmb.2006.13.133","volume":"13","author":"J Scott","year":"2006","unstructured":"Scott J, Ideker T, Karp R, Sharan R: Efficient algorithms for detecting signaling pathways in protein interaction networks. J Comput Biol 2006, 13: 133\u2013144. 10.1089\/cmb.2006.13.133","journal-title":"J Comput Biol"},{"key":"4377_CR33","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1186\/1471-2105-7-199","volume":"7","author":"T Shlomi","year":"2006","unstructured":"Shlomi T, Segal D, Ruppin E, Sharan R: QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinformatics 2006, 7: 199. 10.1186\/1471-2105-7-199","journal-title":"BMC Bioinformatics"},{"key":"4377_CR34","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1089\/cmb.2006.0076","volume":"14","author":"Q Yang","year":"2007","unstructured":"Yang Q, Sze S: Path matching and graph matching in biological networks. J Comput Biol 2007, 14: 56\u201367. 10.1089\/cmb.2006.0076","journal-title":"J Comput Biol"},{"issue":"2","key":"4377_CR35","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1089\/cmb.2008.02TT","volume":"16","author":"X Qian","year":"2009","unstructured":"Qian X, Sze S, Yoon B: Querying pathways in protein interaction networks based on hidden Markov models. J Comput Biol 2009, 16(2):145\u2013157. 10.1089\/cmb.2008.02TT","journal-title":"J Comput Biol"},{"issue":"12","key":"4377_CR36","doi-asserted-by":"publisher","first-page":"e8070","DOI":"10.1371\/journal.pone.0008070","volume":"4","author":"X Qian","year":"2009","unstructured":"Qian X, Yoon B: Effective identification of conserved pathways in biological networks using hidden Markov models. PLoS ONE 2009, 4(12):e8070. 10.1371\/journal.pone.0008070","journal-title":"PLoS ONE"},{"issue":"2","key":"4377_CR37","doi-asserted-by":"publisher","first-page":"e32","DOI":"10.1371\/journal.ppat.0040032","volume":"4","author":"M Dyer","year":"2008","unstructured":"Dyer M, Murali T, Sobral B: The landscape of human proteins interacting with viruses and other pathogens. PLoS Pathog 2008, 4(2):e32. 10.1371\/journal.ppat.0040032","journal-title":"PLoS Pathog"},{"key":"4377_CR38","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, et al.: Gene ontology: tool for the unification of biology. The Gene ontology consortium. Nat Genet 2000, 25: 25\u201329. 10.1038\/75556","journal-title":"Nat Genet"},{"issue":"18","key":"4377_CR39","doi-asserted-by":"publisher","first-page":"3710","DOI":"10.1093\/bioinformatics\/bth456","volume":"20","author":"E Boyle","year":"2004","unstructured":"Boyle E, Weng S, Gollub J, Jin H, Botstein D, Cherry J, Sherlock G: GO::TermFinder\u2013open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004, 20(18):3710\u20133715. 10.1093\/bioinformatics\/bth456","journal-title":"Bioinformatics"},{"key":"4377_CR40","unstructured":"[\n                    http:\/\/www.cse.usf.edu\/~xqian\/hiv\/\n                    \n                  ]"},{"issue":"2","key":"4377_CR41","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1007\/BF01541733","volume":"15","author":"J Monroe","year":"1995","unstructured":"Monroe J, Silberstein L: HIV-mediated B-lymphocyte activation and lymphomagenesis. J Clin Immunol 1995, 15(2):61\u201368. 10.1007\/BF01541733","journal-title":"J Clin Immunol"},{"key":"4377_CR42","unstructured":"UniProt database[\n                    http:\/\/www.uniprot.org\/\n                    \n                  ]"},{"key":"4377_CR43","unstructured":"HIV-1, Human Protein Interaction Database[\n                    http:\/\/www.ncbi.nlm.nih.gov\/RefSeq\/HIVInteractions\/\n                    \n                  ]"},{"key":"4377_CR44","unstructured":"NATALIE[\n                    https:\/\/www.mi.fu-berlin.de\/wiki\/pub\/LiSA\/Natalie\/natalie-0.9.tgz\n                    \n                  ]"},{"key":"4377_CR45","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1093\/nar\/27.1.95","volume":"27","author":"J Blake","year":"1999","unstructured":"Blake J, et al.: The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse. The Mouse Genome Database Group. Nucleic Acids Research 1999, 27: 95\u201398. 10.1093\/nar\/27.1.95","journal-title":"Nucleic Acids Research"},{"key":"4377_CR46","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1093\/nar\/gkg056","volume":"31","author":"G Bader","year":"2003","unstructured":"Bader G, Betel D, Hogue C: BIND: the Biomolecular Interaction Network Database. Nucleic Acids Research 2003, 31: 248\u2013250. 10.1093\/nar\/gkg056","journal-title":"Nucleic Acids Research"},{"key":"4377_CR47","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/nar\/gkg095","volume":"31","author":"B Boeckmann","year":"2003","unstructured":"Boeckmann B, et al.: The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Research 2003, 31: 365\u2013370. 10.1093\/nar\/gkg095","journal-title":"Nucleic Acids Research"},{"issue":"10","key":"4377_CR48","doi-asserted-by":"publisher","first-page":"2363","DOI":"10.1101\/gr.1680803","volume":"13","author":"S Peri","year":"2003","unstructured":"Peri S, et al.: Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 2003, 13(10):2363\u20132371. 10.1101\/gr.1680803","journal-title":"Genome Res"},{"issue":"Database issue","key":"4377_CR49","doi-asserted-by":"publisher","first-page":"D449","DOI":"10.1093\/nar\/gkh086","volume":"32","author":"L Salwinski","year":"2004","unstructured":"Salwinski L, et al.: The Database of Interacting Proteins: 2004 update. Nucleic Acids Res 2004, 32(Database issue):D449-D451. 10.1093\/nar\/gkh086","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"4377_CR50","doi-asserted-by":"publisher","first-page":"832","DOI":"10.1093\/bioinformatics\/bti115","volume":"21","author":"P Pagel","year":"2005","unstructured":"Pagel P, et al.: The MIPS mammalian protein-protein interaction database. Bioinformatics 2005, 21(6):832\u2013834. 10.1093\/bioinformatics\/bti115","journal-title":"Bioinformatics"},{"key":"4377_CR51","first-page":"146","volume-title":"Proc German Conference on Bioinformatics (GCB 07), Volume 115","author":"S Jaeger","year":"2007","unstructured":"Jaeger S, Leser U: High-precision function prediction using conserved interactions. In Proc German Conference on Bioinformatics (GCB 07), Volume 115 Edited by: Falter C, et al. 2007, 146\u2013162."},{"key":"4377_CR52","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1016\/0022-2836(70)90057-4","volume":"48","author":"S Needleman","year":"1970","unstructured":"Needleman S, Wunsch C: A general method applicable to the search for similarity in the amino acid sequences of two proteins. J Mol Biol 1970, 48: 443\u2013453. 10.1016\/0022-2836(70)90057-4","journal-title":"J Mol Biol"},{"issue":"Database issue","key":"4377_CR53","doi-asserted-by":"publisher","first-page":"D452","DOI":"10.1093\/nar\/gkh052","volume":"32","author":"H Hermjakob","year":"2004","unstructured":"Hermjakob H, et al.: IntAct: an open source molecular interaction database. Nucleic Acids Res 2004, 32(Database issue):D452-D455. 10.1093\/nar\/gkh052","journal-title":"Nucleic Acids Res"},{"issue":"Database issue","key":"4377_CR54","doi-asserted-by":"publisher","first-page":"D476","DOI":"10.1093\/nar\/gki107","volume":"33","author":"K O\u2019Brien","year":"2005","unstructured":"O\u2019Brien K, Remm M, Sonnhammer E: Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res 2005, 33(Database issue):D476-D480. 10.1093\/nar\/gki107","journal-title":"Nucleic Acids Res"},{"key":"4377_CR55","unstructured":"[\n                    http:\/\/www.cs.cmu.edu\/~oznur\/hiv\/hivPPI.html\n                    \n                  ]"},{"key":"4377_CR56","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511790492","volume-title":"Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids","author":"R Durbin","year":"1998","unstructured":"Durbin R, Eddy S, Krogh A, Mitchison G: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, UK; 1998."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S1-S19.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-S1-S19\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S1-S19.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T05:28:07Z","timestamp":1548221287000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-S1-S19"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,2,15]]},"references-count":56,"journal-issue":{"issue":"S1","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4377"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-s1-s19","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,2,15]]},"article-number":"S19"}}